Biodiversity Monitoring

New Guinea is the world's richest island flora (~2,856 orchid species), yet most species are represented by only a handful of photographs, far fewer than direct species-level classification requires. Methods for fine-grained identification in such species-rich, data-poor floras are needed, and it remains unclear which backbone architecture and pretraining strategy best support them. We built a two-stage system that first predicts the genus of a query photograph, then retrieves visually similar reference images of candidate species using FAISS. We compared four pretrained backbones -- two Vision Transformers (ViTs; DINOv2, BioCLIP 2) and two CNNs (ConvNeXt V2-L, EfficientNetV2-L) -- fine-tuned under an identical protocol on a fixed, species-stratified partition of 16,701 photographs spanning 120 genera and 1,350 species, assessing accuracy, calibration, error structure, species retrieval, and open-set detection of novel genera. DINOv2 attained the best genus performance (macro top-1 66.9%, 95% CI 63.7-70.6; global top-1 88.9%); both ViTs outranked both CNNs, and general-purpose self-supervised pretraining (DINOv2) outperformed domain-matched biological pretraining (BioCLIP 2) by 7.1 points of macro top-1. Errors concentrated on two abundant genera acting as error attractors. DINOv2 embeddings achieved species Recall@5 of 86.6% and genus Recall@5 of 98.7%; temperature scaling reduced every backbone's Expected Calibration Error to about 0.03; and a distance-based open-set gate flagged unseen genera (mean AUROC 0.958). A self-supervised Vision-Transformer backbone combined with embedding retrieval is an effective, deployable strategy for fine-grained identification in species-rich, data-poor floras. The system is released as an open web application (the New Guinea Orchid Identifier), offering a practical template for other hyperdiverse, under-documented taxa.

Label-free clustering of frozen pretrained visual embeddings offers a scalable route to biodiversity monitoring, but image-only fine-grained taxonomy exhibits a consistent coarse-to-fine failure mode: clusters recover broad taxonomic structure yet plateau at species level. We study this behaviour on BIOSCAN-5M through an information-calibrated clustering analysis. BioCLIP~2 features with UMAP and HDBSCAN reach $0.79$ AMI at family and $0.67$ at genus, substantially improving over the prior image baseline and remaining competitive with oracle-$K$, graph-based, and learned clustering heads on the same frozen features. To diagnose whether the remaining plateau is method-limited or information-limited, we introduce InfoTaxa, which combines clustering efficiency---the fraction of probe-estimated image information recovered by an unsupervised partition---with paired DNA as an audit signal only, not an inference input. The density pipeline recovers approximately $0.90$ and $0.81$ of the image-available information at order and family, respectively. Held-out late-fusion probes show that adding DNA to the image embedding reduces species-level prediction error by approximately two bits. Robustness analyses cover multiple image encoders, described-species and rare-class subsets, probe diagnostics, and held-out-species coarse-rank generalisation and same-species retrieval. Thus, in the tested setting, species-level label-free clustering is both clustering-limited and representation-limited: improved clustering may recover additional image-exposed structure, but cannot close the DNA-audited information gap alone.

Passive acoustic monitoring can measure biodiversity at larger scales, but time--frequency annotation of animal vocalizations is expensive, site-specific, and difficult to sustain at scale. We present a label-efficient sound detection framework that combines masked audio pretraining with a lightweight detector on mel spectrograms, then further improves robustness through iterative self-training on unlabeled audio. We first pretrain a ViT-based encoder on unlabeled recordings via masked reconstruction and transfer the encoder to a detection backbone. To better separate animal sounds from confounding background, we add a box-level contrastive loss that pulls matched event regions together while pushing noisy negatives apart. We then apply a two-stage pseudo-labeling curriculum to exploit large unlabeled pools without additional annotation. We evaluate the performance on two ecologically distinct domains: tropical rainforest soundscapes (Indonesia) and bird vocalizations in Mediterranean habitats (Spain). On both domains, masked audio pretraining and contrastive learning consistently improve time--frequency detection under temporal and cross-site distribution shift, and self-training yields further gains in out-of-distribution performance. On the rainforest domain, MAST with self-training achieves +0.22 mAP and +0.24 F1 over the strongest baseline under cross-site shift. On the bird domain, self-training achieves +0.12 mAP and +0.10 F1 over the strongest baseline under cross-site shift. Overall, our results show that MAST can effectively extend self-supervised audio representations from clip-level tasks to robust box-level localization across diverse bioacoustic settings, providing a practical path for biodiversity monitoring with limited labels.

Declining insect populations make reliable biodiversity monitoring increasingly urgent, yet monitoring of insect biodiversity is hampered by a lack of standardised data and by costly and time-consuming manual identification by expert entomologists. Deep learning-based image classifiers, processing data from automated non-lethal camera traps, have the potential to transform and scale insect biodiversity monitoring. However, challenges remain in acquiring expert-annotated datasets, developing model architectures that generalise well across diverse taxonomic levels and training models on highly imbalanced data. Hierarchical data also benefits from designing models that default to higher-confidence, coarser-level predictions, when uncertain about finer taxonomic levels. In this paper we address these challenges with a deep learning-based hierarchical classification model. First, we present a manually curated, long-tailed dataset of around one million images of insects, extracted from 1,801 camera-trap video recordings and annotated with a five-level, 34-class hierarchy. Further, we adapt a hierarchical classification model architecture to a five-level variable-depth hierarchy, with class-balanced weighting. Our model improves on non-hierarchical classifiers by leveraging biological taxonomy to extract granularity-specific visual features and makes hierarchy-consistent predictions to the deepest taxonomic level that meets a confidence threshold (T = 0.6). Our model achieved a per-level accuracy of 80-99% on test data, across five levels of hierarchy. Furthermore ...

Automated individual animal re-identification is essential for large-scale biodiversity monitoring; however, field imagery complicates separating identity cues from nuisance variation in pose, illumination, background, resolution, and species-specific morphology. The DS@GT ARC submission to AnimalCLEF 2026 introduces a multi-species image-clustering system for re-identifying Eurasian lynx, fire salamanders, loggerhead sea turtles, and Texas horned lizards. Instead of relying on a single descriptor or nearest-neighbor retrieval, this approach formulates re-identification as species-aware graph construction over candidate image pairs. The pipeline integrates tailored preprocessing, global candidate retrieval, LightGlue-based local verification with multiple keypoint families, LightGBM pair scoring, conservative edge admission, and Leiden community detection. This design directly addresses a primary failure mode of clustering-based re-identification: high-scoring false pairs that act as bridge edges and merge distinct individuals through transitive closure. Across species, ablation studies demonstrate that local feature support, foreground-aware preprocessing, and species-specific backbone selection enhance pair evidence, while graph operating points determine the trade-off between fragmentation and over-merging. The selected submission achieved a public ARI of 0.733 and a private ARI of 0.674, ranking fifth among 230 teams. These results indicate that robust wildlife re-identification requires not only strong visual representations but also calibrated integration of global similarity, local identity markings, neighborhood context, and graph-level constraints. The code can be found at https://github.com/dsgt-arc/animalclef-2026.

Eco-acoustic monitoring generates vast volumes of audio data, making active learning a promising approach for reducing annotation effort while efficiently training reliable biodiversity classifiers. This report presents CARE-DPP, a batch active-learning acquisition method submitted to BioDCASE Active Learning for Bioacoustics 2026 challenge. The method combines class-balanced predictive uncertainty with embedding-space novelty, while a determinantal point process (DPP) objective selects a high-quality and non-redundant acquisition batch. The uncertainty-novelty balance is annealed over the annotation budget: early cycles emphasize geometric coverage, whereas later cycles increasingly exploit classifier uncertainty. To mitigate unreliable early scores, the DPP candidate pool mixes top-quality candidates with a decreasing proportion of random exploration. An adaptive acquisition schedule uses smaller batches early and larger batches later. Evaluated over five repeats on the BirdSet HSN, POW and UHH subsets and on ATBFL, CARE-DPP obtains a mean development AULC of 0.50 for macro mAP, compared with 0.46 for the official CoreSet baseline. Ablations identify DPP batch diversification and the adaptive acquisition schedule as the largest contributors.

Urban expansion threatens global biodiversity, especially affecting arboreal species due to the fragmentation of forest habitats. The movement of arboreal species across disjointed forest patches increases mortality risk and, thus, compromises their conservation. In this context, the installation of canopy bridges can be a viable strategy; yet continuous monitoring of their use by arboreal species is essential for ensuring their effectiveness, typically carried out with the aid of camera traps. However, this method often produces false-positive images that demand time from conservationists for review. In this context, computer vision algorithms can optimize the task of detecting target species using the canopy bridges. In this study, we explored the automatic detection of brown howler monkeys (Alouatta guariba) in videos obtained by camera traps. Given the need for a large number of annotated images of the target animals to train the algorithms, we tested the incorporation of auxiliary data to improve detection models, fine-tuning the YOLOv10 framework using varying proportions of them. The improvement of these automatic detection techniques contributes to conservation efforts, by providing automatic tools to monitor solutions that minimize the impact of human interference in animals habitats.

Artificial intelligence is transforming biodiversity monitoring by enabling automated analysis of ecological imagery collected from camera traps, drones, satellites, underwater platforms, and other sensing systems. These tools can expand the scale and speed of conservation assessments, yet many computer vision models remain difficult to inspect, making it challenging to determine whether predictions are based on ecologically meaningful signals or on spurious correlations, sampling biases, and other artifacts that may undermine conservation decisions. We argue that explainable artificial intelligence (XAI) should become a standard component of ecological model validation because conservation practitioners increasingly depend on understanding not only whether a model is accurate, but why it is accurate. We provide practical guidance for applying XAI to three common ecological computer vision tasks: image classification, object detection, and image segmentation. To illustrate how XAI can support ecological model auditing, refinement, and deployment, we present two case studies using aerial imagery: harbor seal detection and cetacean anatomical segmentation. These examples demonstrate how explanation methods can identify biologically meaningful cues, reveal false positives driven by background and shape confounds, uncover edge and occlusion effects, and guide data collection, augmentation, and retraining strategies. More broadly, they show how explainability can help assess whether model reasoning aligns with ecological understanding. We conclude by identifying key challenges and opportunities. By making model behavior more transparent and scientifically interrogable, XAI can help ensure that AI-supported ecological evidence is more reliable, understandable, and actionable for biodiversity conservation.

Scaling wildlife monitoring for real-world conservation deployments requires automated analysis of smart sensors that operate under severe annotation scarcity. We propose leveraging expert knowledge of species activity patterns as an annotation-free validation signal for multimodal monitoring pipelines. We operationalize agreement as the alignment of independently derived hourly activity curves both with each other and with published behavioral priors-a three-way convergence that rules out shared-data confounds and dataset-internal correlation as alternative explanations. Our vision pipeline combines zero-shot species detection via BioCLIP 2, sliced inference to handle deployment-constrained camera positioning, and geometry-based geographic localization from camera trap imagery. Our acoustic pipeline detects species vocalizations via a fine-tuned classifier. We validate the pipeline on a breeding herd of Milu deer and demonstrate that both modalities independently recover activity patterns consistent with known deer behavioral ecology with minimal manual annotation. The framework applies to species detectable in both visual and acoustic modalities for which behavioral priors are documented in the literature, suggesting a practical path toward self-validating wildlife-monitoring pipelines at conservation scale.

Camera-trap monitoring in African tropical forests increasingly extends beyond closed-canopy interiors to riverbanks, clearings, and park edges. Among available open tools for African forest camera-trap classification, DeepForestVision is the only one providing a matched offline workflow for both photographs and videos, and previous work showed that it outperformed other available baselines on a comparable benchmark. However, it was designed for closed-canopy, ground-level forest interiors and uses a 35-class prediction space that becomes too coarse when deployments encounter arboreal primates, birds, semi-aquatic taxa, or human-associated confounders such as livestock. We present DeepForestVisionV2, an ecology-driven expansion from 35 to 64 prediction classes (61 animal classes plus human, vehicle, and blank) designed to address three recurrent deployment gradients: vertical stratification, scene openness, and anthropogenic interfaces. DeepForestVisionV2 retains the same offline workflow and is trained on 1,535,010 photographs and 243,354 videos from multi-country African tropical-forest projects. Evaluation combines a cross-country cropped-photo validation set, used to assess robustness across sites and camera-trap settings, with three held-out Uganda video benchmarks spanning the targeted gradients. On the validation set, DeepForestVisionV2 reaches 0.86 accuracy, 0.82 macro-F1, and 0.81 balanced accuracy. On the deployment benchmarks, it preserves or improves baseline accuracy despite its harder classification task, while increasing the number of identified taxa from 22 to 29 in forest-interior videos and from 4 to 9 at riverbanks. In the park-edge use case, it raises accuracy from 0.62 to 0.86 and reduces false alarms from 11 to 0. These results show that DeepForestVisionV2 materially improves field utility while preserving robustness across sites, habitats, and camera-trap settings.

Correct identification of fish species is highly significant for food security, economic development, and climate resilience in Bangladesh. Protein sequences directly reflect functional and evolutionary constraints which are important for species authentication and biodiversity monitoring. Yet there exists no benchmark for native Bangladeshi fish species identification from protein sequence. In this study, we addressed this gap by introducing the first curated dataset for nine native Bangladeshi fish species of 2845 high quality protein sequences. We also established the first protein sequence classification baseline for this domain through a systematic benchmarking of seven architectural paradigms. Moreover, we propose a realistic deployable novel hybrid architecture of MotifCNN and Transformer with Terminal-Aware Positional-Encoding (MotifCNN-Transformer+TA-PE). Our novel architecture achieves 79.80% accuracy with macro-F1 of 0.80. The highest 83.04% accuracy is achieved by finetuned protein language model ProtBERT that has 420M parameters and requires dual 16GB GPUs for inference. According to McNemar's test, ProtBERT's 3.24% accuracy gain over our MotifCNN-Transformer+TA-PE is statistically insignificant (p = 0.1120). Our novel architecture beats it among six of the nine classes in per class identification. Also our MotifCNN-Transformer+TA-PE is approximately 5x faster, 42x smaller, and supports 16x larger batch size than ProtBERT and has GPU free inference, making it more practical for deployment in resources constrained areas such as rural Bangladesh. Beyond this, our foundational work shows effects of phylogenetic relationships on sequence similarity and establishes pathways for fisheries management, food authentication and biodiversity conservation in South Asia's protein dependent economy.

Camera traps have become a cornerstone of biodiversity monitoring, but the artificial intelligence that turns vast quantities of images into usable ecological data is often locked behind commercial platforms or trained on fauna that does not match that of the British Isles. In an attempt to remove barriers and increase uptake, we release an open-source object detection model for 31 classes, 28 common UK mammal and bird species, plus utility classes for humans, calibration poles, and vehicles, drawn from a curated dataset of 48,165 labelled instances assembled from multiple sites over a decade of operational deployment through Conservation AI and its successor, Trap Tracker. The model, a YOLO26x detector trained and tested on an 80/10/10 class-stratified split, achieves a mean Average Precision of 0.984 at Intersection over Union (IoU) of 0.5 (0.956 at IoU 0.5-0.95) on the held-out validation set, with precision 0.988 and recall 0.965. On an unseen held-out test split, mean per-species confidence ranged from 0.96 to 0.99 across the 31 classes, with a 0.17% false-negative rate concentrated in difficult night-time, distant, or occluded images. These metrics are from data from the same pool of sites and cameras as training, so performance at entirely new sites is left to future work. We release the trained weights in ONNX format under a non-commercial licence, with local desktop and real-time camera support, aimed explicitly at ecologists with no machine-learning experience. This release is a deliberate counterweight to the multiple paid for models that have developed over the last decade.

We describe a versioned cross-domain dataset of 410,499 active tropical species (working snapshot 2026-04-20) spanning three applied subdomains -- tropical_plants, tropical_aquatic, and tropical_pets -- that share a commercial and regulatory life cycle but are distributed across kingdom-organised biodiversity infrastructures. The resource joins taxonomic identifiers from GBIF, Plants of the World Online, iNaturalist, NCBI Taxonomy, the Catalogue of Life and the Encyclopedia of Life, and adds three original layers: a cross-domain ontology that re-segments taxa along trade and husbandry contexts; a Chinese vernacular layer with explicit per-name provenance under a typology that excludes unverified machine-generated proposals; and a CITES source-linkage layer connecting each taxon to its Species+ entry. Chinese vernacular coverage -- the proportion of taxa carrying a CJK Chinese name distinct from the scientific binomial -- reaches 99.50 percent (408,456 of 410,499; full-population count). Coverage characterises completeness, not name-translation accuracy; the latter is bounded by the four-level provenance typology and is the subject of a preliminary internal review reported here, with a blind external audit identified as the principal open item. Upstream content is referenced by stable identifier only for the original-contribution layers, supporting CC-BY 4.0 reuse. The dataset is deposited on Zenodo (10.5281/zenodo.20377811). This preprint is the canonical v1.0 description of the dataset's current state; future Data Descriptor submission is anticipated but is contingent on the validation and release-engineering items listed in the Limitations.

Global insect population declines necessitate scalable, continuous monitoring systems, yet existing vision-based solutions remain constrained by high hardware costs, energy demands, and reliance on centralized processing or cloud connectivity. This article presents three contributions to address these limitations. First, we propose a motion-informed frame filtering algorithm based on temporal differencing, gamma-corrected motion amplification, and block-based motion density analysis that discards irrelevant frames at the edge while preserving insect activity, without requiring deep learning inference on the sensing device. Second, we introduce a distributed, hierarchical IoT architecture that decouples data acquisition from AI classification through this edge-level preprocessing, projecting fractional scaling of central processing requirements and significantly increasing monitoring coverage compared to monolithic single-stream approaches. Third, we validate the complete system through real-world outdoor deployments on low-cost commodity hardware along four axes: real-time performance, network scalability, hardware cost, and energy efficiency under varying wind conditions. Results demonstrate 60-80% frame reduction under light-wind conditions, sustained real-time 30 FPS operation with 12.8 ms of computational headroom, up to 22.6% energy savings, and support for 5-6 concurrent edge streams per central node. These findings establish a practical foundation for dense, low-cost biodiversity monitoring networks in urban environments.

Global biodiversity is declining at unprecedented rates, yet the tools available to monitor and protect ecosystems remain limited by constraints in power, connectivity, and accessibility. We present SPARROW, a hardware and software open-source platform that integrates solar energy, edge artificial intelligence, and satellite communication to enable continuous, autonomous biodiversity monitoring in remote environments. Each SPARROW node combines a low-power Graphics Processing Unit (GPU) with modular visual, acoustic, and environmental sensors, performing on-device deep learning inference and transmitting summarized results through Low-Earth-Orbit (LEO) satellite or Global System for Mobile Communications (GSM) networks. We deployed SPARROW across tropical, temperate, and montane ecosystems in Colombia, Peru, Tanzania, and the United States, where it sustained 24/7 operation under variable environmental conditions and collected more than two million images and acoustic recordings in the first 190 days. The system demonstrated robust real-time classification and adaptive power management, achieving full autonomy without on-site human intervention. By integrating renewable energy, on-edge AI, and open-source design, SPARROW lowers the technical and financial barriers to ecological monitoring and establishes a scalable foundation for a distributed, intelligent network of sensors, an emerging "Internet of Living Things" for planetary biodiversity monitoring.

Large language model (LLM) serving creates environmental impacts beyond carbon and water, including ecosystem damage through biodiversity-related pathways. We present BIRDS, a framework for Biodiversity Impact of Request-Driven LLM Serving. BIRDS defines request-level functional units, quantifies operational and embodied biodiversity impact, and introduces Quality-Normalized Biodiversity Impact (QNBI) to jointly analyze ecological impact and response quality. Across diverse workloads, models, GPUs, and regions, BIRDS reveals that biodiversity impact accumulates at scale and exposes actionable quality-aware serving tradeoffs.

Passive acoustic monitoring (PAM) enables large-scale biodiversity assessment, but continuous recording generates large amounts of non-informative audio, creating challenges for storage, power consumption, and long-term edge deployment. Bird audio detection (BAD), which identifies bird vocalizations, can reduce this burden by filtering irrelevant recordings before downstream analysis. However, most BAD systems are trained on temperate datasets despite tropical soundscapes being denser, more species-rich, and acoustically unpredictable. To address this gap, we introduce SEABAD (Southeast Asian Bird Activity Detection), a dataset of 50,000 curated three-second clips from Southeast Asian soundscapes, evenly balanced between bird-present and bird-absent samples. The dataset spans 1,677 bird species and is standardized to 16 kHz mono audio for embedded and low-power inference. We developed a dual-branch curation pipeline: a six-stage positive-label workflow applied to Xeno-Canto recordings, alongside six source-specific negative-label extractions from environmental datasets. These procedures reduced class imbalance by 13.7% (Gini coefficient: 0.601 to 0.519). A manual audit of 1,000 positive clips confirmed 97.8% +/- 0.9% labeling accuracy. Baseline experiments using MobileNetV3-Small achieved 99.57% +/- 0.25% accuracy and 0.9985 +/- 0.0002 AUC across three random seeds. SEABAD and the full curation pipeline are publicly released to support tropical BAD research and energy-efficient acoustic monitoring.

Passive acoustic monitoring enables continuous, non-invasive biodiversity assessment across diverse ecosystems. The scale of these datasets has driven the adoption of machine learning, with supervised approaches showing strong performance. However, supervised methods require time-resolved annotated datasets, which remain scarce, especially in complex tropical soundscapes. We present PteroSet, a curated dataset of strongly annotated Neotropical bird vocalizations recorded in Puerto Asis (Putumayo) and Pivijay (Magdalena), Colombia, between 2023 and 2025. The dataset comprises 563 recordings (73.62 h) and 15,372 time-frequency annotations, including 6,702 events identified to the species level across 168 species. We release the annotations in a COCO-inspired JSON schema that unifies audio files, taxonomic categories, and labels for machine learning workflows. Beyond providing annotated data, PteroSet serves as a realistic benchmark that highlights key characteristics of tropical soundscapes, including acoustic co-occurrence and domain shift across recording sites. We provide a deep learning baseline for binary bird detection, demonstrating PteroSet's usability and the challenges it presents.

In this paper, we explore deep learning techniques for individual identification of animals based on their skin patterns. Individual identification is crucial in biodiversity monitoring, since it enables analysis of decline or growth of populations, or intra-species interactions within populations. Models trained for the task of individual identification often do not focus on the skin pattern of animals, but on background details or body shape details. These characteristics are not individually specific, or can change drastically through time. We focus on techniques that will make machine learning models more responsive to skin pattern structure when extracting individual visual embeddings from images. For this, we explore image inpainting of task-specific masks as an auxiliary task to enhance ML-based individual identification from animal skin patterns. We propose a comparative analysis among four models as an encoder backbone for the individual identification task. We focus on the case study of zebrafish, which is a widely recognized biological model organism, and which exhibits individually identifying skin patterns. To evaluate encoder backbone performance, we present standard metrics for classification accuracy, embedding clustering metrics, and GradCAM visualizations.

Accurate seabed mapping is essential for habitat monitoring and infrastructure inspection. In turbid, shallow coastal waters, such as shellfish aquaculture farms, the effectiveness of traditional optical methods is limited. Autonomous surface vehicles (ASVs) equipped with forward-looking sonar (FLS) offer a promising alternative. However, existing sonar-based systems face challenges in achieving fine resolution mapping over long trajectories due to low-resolution positioning measurements and accumulated drift over long trajectories. In this paper, we present a drift-resilient seabed mapping framework that integrates local FLS frame alignment using the Fourier-Mellin transform (FMT) with global trajectory optimization based on an extended Kalman filter (EKF) that fuses global positioning system (GPS), inertial measurement unit (IMU), and compass data. A variance-based image blending strategy is used to further reduce visual artifacts in overlapping regions. Field trials on a structured oyster farm site show that our framework helps reduce drift in RMSE by 9.5% relative to the FMT-only baseline. This framework also enables sub-meter reconstruction accuracy and preservation of high-resolution textures needed for oyster inventory estimation within the mapped areas.

Automated plant recognition plays a crucial role in biodiversity monitoring and conservation, yet current approaches rely heavily on supervised learning, which is limited by the availability of expert-labeled data. Self-supervised learning (SSL) offers a scalable alternative, but existing methods and training protocols are largely designed for coarse-grained visual tasks and may not transfer well to fine-grained domains such as plant species recognition. In this work, we investigate SSL for plant image representation learning. We show that commonly used augmentations in SSL pipelines - such as Gaussian blur, grayscale conversion, and solarization - are detrimental in the context of plant images, as they remove subtle discriminative cues essential for fine-grained recognition. We instead identify alternative transformations, including affine and posterization, that are better suited to this domain. We further demonstrate that training SimDINOv2 on the iNaturalist 2021 Plantae subset yields significantly stronger representations than training on ImageNet-1K, highlighting the importance of domain-specific data for SSL. Our findings are consistent across both ViT-Base and ViT-Large architectures. Moreover, our models achieve competitive performance and sometimes outperform strong supervised baselines Pl@ntCLEF and BioCLIP on downstream plant recognition tasks in few-shot settings. Overall, our results highlight the critical importance of domain-adapted augmentation strategies and dataset selection in self-supervised learning, and provide practical guidelines for building scalable models for biodiversity monitoring.

The shift from stand-level to individual-tree-level forest assessments supports improved species mapping and biodiversity monitoring, particularly in boreal ecosystems where tree species like aspen (Populus tremula L.) play a keystone role. Airborne laser scanning (ALS) is the standard for such inventories, but a major limitation for developing improved species classification methods is the small number of publicly available ALS datasets containing high-quality, field-validated reference data. Recently, multispectral ALS data has shown promise for tree species classification, but the progress is hindered by the lack of open multispectral ALS datasets with high-quality field reference data. This paper presents and details an open multispectral ALS dataset for tree species classification that was used before its public release for an international benchmarking study of machine learning and deep learning classification methods in a related publication by Taher et al.,(2026). The dataset comprises 6326 segment-level point clouds of individual trees representing nine species in southern Finland. The point cloud data has been acquired using two multispectral laser scanning systems each operating at three laser wavelengths: a helicopter-borne system (HeliALS) with a point density exceeding 1000 points\m2 and an Optech Titan system with approximately 35 points\m2. Furthermore, we present a crowdsourcing application that facilitates the collection of high-quality field reference data of tree species in an efficient and scalable manner. Our article showcases the versatility of the open dataset by presenting new analyses on species classification using multispectral data building upon the initial findings of Taher et al.,(2026).

The correlation between insect morphological traits and climate has been documented in physiological studies, but such studies remain limited by the time-consuming nature of the data analysis. In particular, the open source datasets often lack annotations of species' morphological traits, making dedicated annotations campaigns necessary; these efforts are typically local in scale and costly. In this paper, we propose a pipeline to identify and segment body parts of Odonates (dragonflies and damselflies) using deep neural networks, with the ultimate goal of extracting body parts' colouration. The pipeline is trained on a limited annotated dataset and refined with pseudo supervised data. We show that, by using open source images from citizen science platforms, our approach can segment each visible subject (Odonates) into head, thorax, abdomen, and wings and then extract a colour palette for each body part. This will enable large-scale statistical analysis of ecological correlations (e.g., between colouration and climate change, habitat loss, or geolocation) which are crucial for quantifying and assessing ecosystem biodiversity status.

To address insufficient accuracy in multi-scale segmentation for agricultural habitat recognition, this study proposes a Dynamic Weighted Feature Fusion Network (DWFF-Net). Its encoder uses frozen DINOv3 to extract basic features and introduces a data-level adaptive dynamic weighting strategy based on relationships between image categories and feature maps. The decoder employs a dynamic weight calculation network for deep fusion of multi-level features and a hybrid loss for optimization. Statistical analysis shows that weight entropy tends to decrease as habitat category count increases, indicating adaptive adjustment of fusion strategy according to scene complexity. Experiments on a previously constructed agricultural habitat dataset validate DWFF-Net. Ablations yield mIoU 0.6979 and mF1 0.8049, exceeding the Static Weighted Feature Fusion Network by 1.82% and 1.54%, respectively, confirming that dynamic weighting improves multi-level feature utilization. Compared with U-Net, DeepLabv3+, SegFormer, and DPT, DWFF-Net improves mIoU by 16.32%, 6.49%, 4.17%, and 3.18%, respectively. For tiny features like scattered trees, IoU reaches 0.2707, outperforming those models by 99.85%, 11.45%, 22.24%, and 19.32%, verifying effectiveness in tiny habitat segmentation. This framework enables low-cost, high-precision habitat mapping and supports refined monitoring in agricultural landscapes.

Benthic habitat mapping is fundamental for understanding marine ecosystems, guiding conservation efforts, and supporting sustainable resource management. Yet, the scarcity of large, annotated datasets limits the development and benchmarking of machine learning models in this domain. This paper introduces a thorough multi-modal dataset, comprising about a million side-scan sonar (SSS) tiles collected along the coast of Catalonia (Spain), complemented by bathymetric maps and a set of co-registered optical images from targeted surveys using an autonomous underwater vehicle (AUV). Approximately 36000 of the SSS tiles have been manually annotated with segmentation masks to enable supervised fine-tuning of classification models. All the raw sensor data, together with mosaics, are also released to support further exploration and algorithm development. To address challenges in multi-sensor data fusion for AUVs, we spatially associate optical images with corresponding SSS tiles, facilitating self-supervised, cross-modal representation learning. Accompanying open-source preprocessing and annotation tools are provided to enhance accessibility and encourage research. This resource aims to establish a standardized benchmark for underwater habitat mapping, promoting advancements in autonomous seafloor classification and multi-sensor integration.