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322 papers

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Jun 28, 2026cs.LG

Towards Evaluating Data Priors for Tabular Foundation Models

Data-generating priors are a central component of tabular foundation models because they define the task distribution used during pretraining. However, priors are rarely evaluated as independent components, making it difficult to understand how much they affect downstream model behavior. This raises a methodological question: how can priors from different tabular foundation models be compared independently of the architectures and training protocols they were introduced with? To study this question, we implement a unified interface for publicly available priors from recent tabular foundation models and priors constructed from real datasets. We generate training tasks from each prior, train the same model architecture under a fixed training protocol, and evaluate the resulting models on shared downstream classification tasks. We compare priors through both generated-task statistics and downstream predictive performance. Our results show that different priors favor different downstream behaviors, with some achieving stronger absolute performance and others exhibiting more consistent relative rankings across datasets. We further find that data-level similarity only partially explains downstream behavior. Our code is available at https://github.com/automl/TFM-Playground/tree/prior-dev.
Zeynep Türkmen, Kürşat Kaya, Alexander Pfefferle +1
Jun 27, 2026cs.LG

Statistically Indistinguishable, Operationally Distinct: A Formal Barrier for Tabular Foundation Models

Tabular foundation models cannot reason about data produced by running systems without access to the rules that govern them. We make this statement falsifiable. The \emph{Operational Turing Test} (OTT) constructs pairs of legal and rule-violating database states whose 11- and 22-way column-value marginals match to a total variation of <0.02<0.02; Le~Cam's lemma then bounds any values-only classifier at ≥0.49\geq0.49 Bayes error. Three values-only baselines (XGBoost, TabICL, TabPFN) hit the bound exactly (accuracy 0.500.50, pre-registered two one-sided tests (TOST) p<0.002p<0.002), raw row-level access does not help, exposing relational value consistency closes most of the gap, and only a classifier fed by seven executable rule-derived audits reaches 1.001.00 classification accuracy. In three matched 100100-state frontier large-language-model (LLM) runs, models given the schema, trigger source, rule tables, and state files classify at most 2/502/50 legal states as LEGAL; GPT-5.5 accepts 0/500/50 legal states even with higher reasoning effort and a Structured Query Language (SQL) executor. The access-ladder pattern also appears on a second schema with structurally distinct rule families (banking ledger: cross-row balance, cumulative aggregate). The barrier is identifiability, not capacity: scale, data, and richer features cannot cross it without operational grounding.
Tassilo Klein, Johannes Hoffart
Jun 26, 2026cs.DB

Single and Multi Truth Data Fusion using Large Language Models

Data fusion, also known as truth discovery, is a data integration problem that aims to determine the correct value or set of values for each attribute of an object when presented with potentially conflicting values from multiple sources. Data fusion tasks belong to two main categories: single-truth scenarios, where each attribute has only one correct value, and multi-truth scenarios, where multiple values can be valid simultaneously. This paper investigates the use of Large Language Models (LLMs) in data fusion tasks for tabular data. Various prompting strategies, encompassing both single-truth and multi-truth scenarios, are investigated empirically. Domain-dependent, domain-independent, zero-shot and one-shot prompts are evaluated on three different benchmark datasets. Experimental results demonstrate that LLM-based approaches outperform traditional unsupervised truth discovery methods, such as DART and LTM, across all datasets. The codebase of this study has been made publicly available on GitHub.
Hira Beril Kucuk, Norman W Paton, Jiaoyan Chen +1
Jun 26, 2026cs.SE

Building to the Test: Coding Agents Deliver What You Check, Not What You Requested

Benchmarks are widely used to evaluate task completion by Large Language Models (LLMs), but this approach has accumulated construction-validity problems, and a passing score may not show whether the requested task was delivered. We study both problems. In a controlled code-as-spec setup, two production Copilot CLI agents (claude-opus-4.7, gpt-5.5) re-implement a React Fluent-UI data table in Angular as a reusable library under a hidden 222-test Playwright oracle across 18 runs and three oracle-availability conditions. Alongside the score, we run a mechanical library audit and check each verdict with a no-op ablation. Without the oracle, the library is present but unfinished, revealed by scores. With the oracle in the loop, the score reaches near-perfect, but from a demo holding the tested behavior directly, the library left dead or absent. We call this building to the test; the broader disposition behind both we call validation self-awareness. The agent does not, on its own, validate what it ships as a user would. Prevalence remains an open question across other agents, signals, and model families. Beyond benchmark scores, dispositions like validation self-awareness merit research attention.
Yanuo Ma, Ben Kereopa-Yorke, Ben Schultz
Jun 25, 2026cs.LG

A Causal Foundation Model for Structure and Outcome Prediction

We introduce TabPFN-CFM, a causal foundation model that can handle multiple causal problems. TabPFN-CFM predicts both causal structure and outcomes from observational data, supports queries on all three levels of Pearl's Causal Hierarchy and uses known graph structure when available to improve predictions. TabPFN-CFM is trained on synthetic datasets, and generalises to real datasets, demonstrating improved performance over both structural and outcome prediction baselines.
Max Zhu, Martino Mansoldo, Ching-Hao Wang +1
Jun 24, 2026cs.CR

Privacy Vulnerabilities of Attention Layers in Tabular Foundation Models and Protection of High-Risk Queries

Tabular foundation models are commonly assumed to present limited privacy concerns as they are often pre-trained on large collections of synthetic data. However, these models leverage in-context learning, where sensitive records may be provided directly at inference time as labelled context examples. In this paper, we demonstrate that predictions generated via the attention mechanism leak sufficient information to enable effective Membership Inference Attacks (MIAs). To highlight this vulnerability, we propose AMIA (Attention-based Membership Inference Attack), a shadow-model-free attack that exploits the concentration of transformer attention patterns. Our results show that attention mechanisms reveal strong membership signals, which exceed classical confidence-based attacks, achieving an average gain of 7.7%, specially in low false-positive regimes. To mitigate this risk, we introduce an inference-time defence inspired by kk-anonymity principles. This approach reduces the uniqueness of context-key representations without introducing random noise or retraining the model. By targeting only high-risk queries identified through AMIA scores, the defence substantially reduces membership leakage of this attack by an average of 50% and 25% against confidence-based attacks, while preserving predictive utility with only 3.9% performance degradation. Beyond showing that context examples are vulnerable, we further demonstrate that fine-tuning introduces an additional source of privacy risk. In particular, samples whose prediction confidence increases after fine-tuning become more susceptible to MIAs, indicating that fine-tuning can amplify memorisation and expose sensitive training information through confidence shifts.
Tânia Carvalho, Maxime Cordy
Jun 23, 2026cs.LG

Manifold Constrained Tabular Deep Neural Networks

Tabular classification is often governed by local, condition-triggered rules rather than smooth global patterns. However, tabular deep neural networks (DNNs) are typically built upon Euclidean representations that favor smooth variations and semantic locality. This potential geometric mismatch can make it challenging for tabular DNNs to efficiently represent the discrete, rule-partitioned structures often underlying tabular classification. To address this issue, we propose HDE-Net, a manifold-constrained DNN that enables hierarchical decision modeling in hyperbolic space. We first abstract heterogeneous features into unified Latent Decision Nodes (LDNs) and embed them in the Poincaré ball, forming a continuous representation that resembles tree-structured reasoning. For numerical features, we introduce a Soft Decision Routing mechanism that approximates range-based local rules in a differentiable manner, bringing their LDN semantics closer to those of categorical features. An entropy-aware capacity allocation algorithm further adapts the number of LDNs per numerical feature to balance expressiveness and complexity. On the TALENT-tiny-core classification benchmark (30 datasets), HDE-Net achieves the \textit{best average rank}, outperforming both industrial GBDTs and recent tabular DNNs while maintaining high efficiency.
Tian Li, Lucy Robinson, Varun Ojha +1
Jun 23, 2026cs.LG

Are Tabular Foundation Models Robust to Realistic Query Distribution Shifts in Microbiome Data?

Tabular foundation models (TFMs) achieve strong performance on microbiome abundance data, yet their robustness under realistic distribution shift remains poorly characterized. We introduce a benchmark that evaluates the robustness of TFMs to biologically inspired perturbations across six gut microbiome datasets spanning four disease contexts. In this in-context learning setting, models receive unperturbed support sets as context and are evaluated on perturbed query samples. To isolate robustness beyond "shortcut" features, we preserve the most discriminative taxa and apply three controlled perturbation strategies: (i) removal of high-abundance (uninformative) taxa, (ii) sparsification via increased zero-inflation, and (iii) zero-imputation via spurious non-zero injections. Our results show that protecting discriminative features is insufficient to guarantee stability under support-query shift: across datasets, all perturbations degrade model performance, with zero-imputation consistently the most harmful, indicating that corrupting global feature structure can break generalization even when key taxa are retained. Sparsification disproportionately affects TFMs relative to a classical random forest baseline, suggesting greater sensitivity to zero-inflation-type shifts. The code is publicly available at: https://github.com/UMMISCO/metagenomics-fm/.
Giulia Perciballi, Ahmad Fall, Federica Granese +2
Jun 23, 2026cs.LG

A Fair Evaluation of Graph Foundation Models for Node Property Prediction

Due to the wide use of graph-structured data in different fields of industry and science, the development of Graph Foundation Models (GFMs) has recently attracted a lot of attention. While many different types of models are called GFMs, particular interest has been paid to GFMs designed for node property prediction tasks, which is one of the most popular settings in Graph ML with lots of real-world applications from fraud detection in financial and social networks to recommendation systems for e-commerce and user-generated content platforms. While a number of GFMs for this task have been recently proposed, the field has not converged to a unified evaluation setting, and different works evaluate their models in widely different ways, preventing reliable comparison of GFMs with each other and with other types of models. In this work, we conduct a fair and rigorous reevaluation of 9 recent GFMs for node property prediction, comparing them to strong Graph Neural Network (GNN) baselines. We find that, among these GFMs, only the most recent ones based on the Prior-data Fitted Networks paradigm outperform well-tuned GNNs in predictive performance, although at a higher inference cost.
Oleg Platonov, Gleb Bazhenov, Dmitry Eremeev +1
Jun 20, 2026cs.AI

Evolving from Lessons: Skill-Augmented Table Graph Reasoning for Operation-wise Table Question Answering

Table Question Answering (TableQA) aims to reason over tables to answer user queries. Existing research treats all questions uniformly and evaluates solely through overall accuracy, obscuring a critical reality that LLMs excel at simple lookups yet struggle with complex operations like aggregation and arithmetic. To reveal this disparity, we introduce a novel \emph{Operation-wise TableQA} task with a fine-grained question taxonomy and release two datasets named WikiTQ-ow and TabFact-ow for evaluation. As for modeling bottlenecks, existing methods flatten tables into linearized texts, disrupting inherent structures and inducing the ``lost-in-the-middle'' issue, which poses a primary barrier to complex cross-row reasoning. Moreover, they typically reason from scratch, neglecting reusable patterns shared across similar operations. To address these limitations, we propose a Skill-augmented Table Graph Reasoning (SkillTGR) framework for self-evolving structured reasoning. Specifically, SkillTGR represents tables as attributed graphs with explicit row-column-cell structures, where LLMs plan and execute dynamic chains to retrieve evidence subgraphs for graph traversal reasoning. Based on this, SkillTGR builds a hierarchical SkillBank to distill reason trajectories into abstract skills under cognitive heuristics, then hybrid retrieves both successful and failed skills for contrastive augmented table graph reasoning, thereby enabling the continual self-evolution. Extensive experiments demonstrate that SkillTGR achieves superior performance with an average of 5.91% overall and 5.06% operation-wise improvement, also reducing 19.76% token consumption and 27.64% inference latency. Our codes and data will be released upon publication.
Guixin Su, Qiankun Pi, Mayi Xu +5
Jun 19, 2026cs.LG

A Causal DAG Prior for Synthetic Time-Series Classification Datasets

A Prior-data fitted Network learns the posterior predictive induced by its training prior; bringing this paradigm to multivariate time-series classification therefore calls for a synthetic generator that produces complete labelled datasets with temporal structure. We introduce a causal prior that synthesizes each dataset from a randomly sampled DAG over typed nodes across two modalities (tabular attributes and time series), natively producing multivariate, multi-class TSC datasets with cross-modal causal structure across channels, timesteps and labels, a regime not addressed by existing synthetic priors. To validate the prior, we finetune TabPFN v2.5 with minimal adaptations and evaluate on 75 UCR/UEA datasets within TabPFN's operating regime. Finetuning on our generator significantly outperforms both the unmodified upstream model and a tabular-only ablation of the same prior (Wilcoxon signed-rank p=3.0×10−8p=3.0\times 10^{-8} on ROC-AUC), isolating the contribution of the cross-modal temporal structure.
Franco Martino O'Rourke, Ana Trisovic, Dimitris Bertsimas
Jun 19, 2026cs.CL

TACO: Task-Aware Column Description Generation Using LLMs

Generating accurate and informative column descriptions (e.g. "membership status of customers" for the column name "cust_mem") is essential for a wide range of downstream NLP tasks on tabular data, including NL2SQL, table question answering, and entity linking. This problem arises in enterprises, domain sciences, government data portals, and so on. Despite its importance, most real-world datasets suffer from missing or cryptic documentation, often due to abbreviated column names or domain-specific jargon. Existing approaches largely rely on single-prompt large language models (LLMs), which struggle with three key issues: (i) inconsistent or incorrect handling of abbreviations, (ii) hallucinated or incomplete descriptions, and (iii) redundancy or vagueness that hinders downstream performance. We present TACO, a task-aware framework for automatic column description generation using LLMs. TACO introduces a three-step pipeline: (1) abbreviation expansion, which standardizes column names; (2) description generation, which produces initial semantic descriptions enriched with synonyms and search-oriented keywords; and (3) description revision, which refines these outputs using simulated downstream tasks. In addition, we investigate human-in-the-loop extensions and release new evaluation datasets for entity linking and schema enrichment. Extensive experiments across public and proprietary datasets show that TACO consistently outperforms existing methods, improving downstream task performance by up to 32%.
Ting Cai, Rakesh R. Menon, Yiru Chen +8
Jun 19, 2026cs.LG

DCD-PFN: A Decoupling-Aware Foundation Model for Causal Discovery

Causal discovery is critical for understanding complex data-generating mechanisms, yet traditional algorithms often struggle with highly non-linear and noisy systems, or suffer from severe computational bottlenecks. Recent tabular foundation models based on Prior-Data Fitted Networks (PFNs) have demonstrated remarkable zero-shot inference capabilities, but their potential for explicit structural causal discovery remains underexplored. To bridge this gap, we propose DCD-PFN, a decoupling-aware foundation model for causal discovery. Instead of directly amortizing global graph reconstruction, DCD-PFN focuses on local causal discovery through a decoupling-based paradigm. Through pre-training on diverse synthetic Structural Causal Models (SCMs), the model learns sample-wise decoupling weights that enable Markov boundary (MB) identification. Furthermore, by leveraging parallelized local discovery, DCD-PFN efficiently reconstructs global causal graphs while remaining grounded in the theoretical foundations of decoupling-based causal discovery. Experiments demonstrate that our foundation model achieves robust zero-shot generalization.
Zhengkang Guan, Yikang Chen, Yi He +5
Jun 18, 2026cs.LG

Temporal Causal Prior-Data Fitted Networks for Panel Data with Learned Reliability Signals

Estimating causal effects in industrial time series requires handling temporal dynamics, time-varying treatments, and unobserved confounders. Existing causal foundation models (CausalPFN, CausalFM) operate only on static cross-sectional data; neural temporal methods (CRN, G-Net) require per-dataset training; and concurrent temporal-PFN proposals have not been demonstrated at industrial scale. None output explicit per-pair reliability signals alongside their CATE estimates. We introduce Temporal Causal Prior-Data Fitted Networks (TCPFN), a foundation model for zero-shot temporal causal discovery with learned reliability signals. TCPFN makes four contributions: (1) a Causal Judgment Head that jointly predicts null-effect probability, confounding strength, identifiability, mediation fraction, and causal regime; (2) a mixed training prior covering six causal regimes (independent, direct, confounded, mediated, time-varying confounded, feedback) plus CausalFM-style front-door and instrumental-variable priors; (3) a discrete-token panel-data architecture with cross-attention masking that prevents inter-horizon leakage; (4) zero-shot inference at industrial scale via FAISS-based context selection and one-step posterior correction. On 19 benchmark datasets across five domains, TCPFN achieves competitive zero-shot causal discovery: AUROC 0.96 on Tennessee Eastman, 0.93 on SWaT, 0.98 on Causal Rivers, 0.97 on CAUSRCA. The null detector reaches NullF1 0.94, AUROC 0.99. TCPFN scales to V=1,275 on a proprietary Kraft pulp-and-paper dataset in 6 hours on a single GPU; PCMCI, a CPU-only library, on a V=666 sub-panel of the same data took 81.5 hours, extrapolating by O(V^2) to ~12.5 days at V=1,275. TCPFN's top edges identify cross-subsystem causal relationships while PCMCI's surface within-instrument controller-measurement coupling -- a scalability case study.
Shravan Talupula, Saurabh Sharma
Jun 18, 2026cs.LG

Understanding Latent Flow Models for Tabular Data Synthesis: Targets, Paths, and Sampling

Synthetic tabular data enables microdata sharing in regulated domains, yet deploying continuous-time generative models requires balancing analytical utility, disclosure risk, and computational cost. Latent-space flow models are flexible, but theoretical equivalences across learning targets, probability paths, and sampling dynamics can translate into different behaviour under finite-step integration and explicit compute budgets. We present an empirical study of tabular latent flow models across seven datasets, evaluating velocity, score, noise, and posterior matching objectives under optimal transport (OT) and variance-preserving (VP) paths, ODE and SDE sampling, and varying integration budgets. Our contributions are threefold: (1) we show that the learning target largely determines the utility-risk operating regime, with velocity and posterior matching tending to yield higher utility, while score and noise matching tend to achieve lower disclosure risk; (2) we demonstrate that configuration and sampling choices shift performance, with midpoint often improving distributional fidelity and OT paths often tolerating earlier stopping than VP, enabling compute savings under fixed budgets or risk thresholds; and (3) we distil these findings into actionable defaults and practical configuration guidance to support pre-release model selection under disclosure risk and resource constraints. The code implementation and supplementary materials can be accessed in https://github.com/rulnasution/tabular-latent-flow/.
Bahrul Ilmi Nasution
Jun 18, 2026cs.HC

DataMagic: Transforming Tabular Data into Data Insight Video

Data videos integrate dynamic charts, voice narration, and synchronized animations to communicate data insights as temporal narratives, making them an effective medium for improving data consumption efficiency in the data management lifecycle. However, producing high-quality data videos requires expertise spanning data analysis, narrative design, and video production. Existing approaches fall short: static visualization tools (e.g., BI dashboards) lack narrative logic and animation; authoring tools require users to pre-prepare visualizations rather than working from raw data; pixel-level video generation models cannot guarantee data fidelity or provenance. We demonstrate DataMagic, an end-to-end interactive system that transforms raw tabular data and natural language queries into narrative data-insight videos. To ensure data fidelity, DataMagic introduces the declarative specification DVSpec, which binds visual and animation elements to underlying data fields through data-driven semantic references. To address the combinatorial explosion of the design space, DataMagic adopts a Generate-then-Orchestrate multi-agent architecture that generates candidate scenes in parallel and then optimizes narrative coherence through global orchestration. Leveraging DVSpec's decoupling of logic and rendering, the system further supports three interaction modes and structured provenance-based data Q&A, transforming one-way videos into explorable interactive data interfaces. Evaluation on 109 real-world samples validates the effectiveness of the DataMagic. Homepage: https://datamagic-home.github.io/
Yupeng Xie, Chen Ma, Zhenyang Wang +6
Jun 18, 2026cs.LG

When, Where, and How: Adaptive Binning for Tabular Self-Supervised Learning

Medical tabular data are ubiquitous in clinical research, but deep learning for tables remains underexplored because reliable labels often require costly expert adjudication, even though structured clinical variables are routinely available in tabular form. Self-supervised learning can leverage these unlabeled tables, and recent binning-based pretexts offer a promising inductive bias, but existing objectives fix a single global quantile discretization and apply feature-agnostic supervision. We propose Adaptive Binning, a training-adaptive discretization pretext for tabular SSL that couples discretization to learning through a feature-wise coarse-to-fine curriculum. Motivated by the spectral bias of neural networks and the principles of curriculum learning, our method progressively refines discretization per feature upon plateau detection and selects representation-aware splits to jointly improve value-space concentration and representation-space coherence. A heterogeneity-aware objective unifies categorical reconstruction with ordinal supervision for numerical features, and experiments on public medical tabular datasets under unified evaluation protocols show consistent gains for linear probing and fine-tuning without dataset-specific discretization tuning. We further introduce a medical tabular SSL benchmark with standardized protocols to support reproducible progress in this underexplored domain. Our code is available at https://github.com/labhai/Adaptive-Binning.
Daehwan Kim, Haejun Chung, Ikbeom Jang
Jun 17, 2026cs.LG

Understanding Key Features of Time Series Foundation Models from Epidemic Forecasting

Seasonal influenza infects millions of people and causes substantial morbidity and mortality in the United States each year, making accurate short-term forecasting a core public-health need. Reliable forecasts of epidemic time series can inform vaccination timing, hospital staffing, and resource allocation, yet the comparative behavior of modern forecasting architectures on infectious-disease surveillance data remains insufficiently characterized. We address this gap through a systematic evaluation of regional influenza forecasting using influenza-like illness surveillance and influenza-associated hospitalization time series under both temporal and spatial generalization settings for 1-4-week-ahead prediction. We compare classical neural network architectures, numerical transformer-based models, pretrained time series foundation models, and LLM-based forecasting approaches. Across tasks, we demonstrate that a mixture-of-experts model that fuses multiple pretrained forecasters achieves the strongest overall performance, indicating that heterogeneous pretrained representations provide complementary predictive information. Our results further show that numerical transformer-based models produce reliable forecasts, while pretraining provides the largest gains at longer horizons, particularly when the pretraining domain is mechanistically aligned with influenza dynamics. In contrast, LLM-based time series methods underperform relative to numerical forecasters in this setting. Finally, we examine hospitalization information as both an auxiliary covariate and a pretraining source. Hospitalization signals provide complementary improvements in selected settings and clarify when additional surveillance streams enhance the robustness of multi-horizon forecasting. These findings provide actionable guidance on model selection, pretraining strategy, and auxiliary-signal use for influenza preparedness.
Alireza Jafari, Judy Fox, Geoffrey C. Fox +2
Jun 17, 2026cs.LG

Reinforcement Learning Foundation Models Should Already Be A Thing

Foundation models for language and vision are powered by internet-scale data, while structured domains such as tabular prediction are powered by synthetic data. This substitute shifts the challenge from collection to prior design. Such priors already exist for many structured tasks: TabPFN and its successors solve tabular classification with a transformer pretrained on a synthetic Bayesian prior. We make two points. \textbf{First}, reinforcement learning is the conspicuous gap: sampling a synthetic MDP is as feasible as sampling a synthetic tabular dataset, yet no in-context RL work treats prior design as a primary objective. \textbf{Second}, MDPs admit a fixed-size sufficient statistic, independent of the episodes observed and tabular in shape, which makes them directly amenable to the attention-based architectures used for tabular foundation models, with a policy head replacing the supervised target. Together these define the agenda for an RL foundation model. As a proof of concept, we train a Graph Attention Network entirely on synthetic MDPs and show that, with no task-specific tuning, it solves held-out tabular benchmarks in context, both online and offline: online, in far fewer episodes than UCB-VI and tabular Q-learning, and offline, competitively with VI-LCB.
Abdelrahman Zighem, Jill-Jênn Vie
Jun 17, 2026cs.CV

Rethinking the Pointer Loss in Table Structure Recognition: Geometry-Aware Pointer Loss for Spatial Locality

Table Structure Recognition (TSR) using a pointer network achieves impressive results by predicting HTML sequences while aligning tags to detected text (or cell) regions. However, our analysis reveals that when pointer networks fail, 79.6% of errors occur between spatially adjacent cells (Manhattan distance <= 2). Despite this, standard cross-entropy loss weights all negative candidates equally. In this work, we propose Geometry-Aware Pointer (GAP) Loss, which reweights the cross-entropy objective based on spatial proximity to ground truth. By applying inverse distance weighting, GAP focuses gradient flow where the model struggles most: immediate neighbors receive stronger gradients than distant cells. Our approach requires only a straightforward modification to the loss computation, maintaining the same model architecture with zero additional inference cost. Extensive experiments on PubTabNet and SynthTabNet demonstrate that GAP consistently reduces adjacent-cell errors, achieving new state-of-the-art performance. Our findings suggest that incorporating geometric inductive biases at the loss level provides a simple yet effective approach to robust TSR. Our code is available at https://github.com/teamreboott/GAP
Hong-Jun Choi, Jongho Lee, Jaeyoung Kim
Jun 17, 2026cs.LG

Bounded Context Management for Tabular Foundation Models on Stream Learning

Tabular stream learning requires predictions on sequentially arriving examples under distribution shift. While standard methods adapt by updating model states, tabular foundation models (TFMs) make predictions conditioned on a labeled context in an in-context manner, making them a natural alternative for stream learning. This shifts the challenge from how to update the model to how to manage the context. We propose a future information view that yields three practical requirements for context management: preserve recent examples, retain uncertain examples, and remove redundant examples. We instantiate these requirements as CURE (Context management via Uncertainty-aware admission and Redundancy aware Eviction), a context-managing policy with entropy-gated admission and redundancy-aware eviction. Across seven streams, CURE shows up to 27.0% relative improvement over classical stream learners, remains robust across multiple TFM backbones, and ranks first among other policy variants. Code and datasets are available at https://github.com/morcellinus/CURE-ICML-FMSD.
Jinmo Lee, Doyun Choi, Moongi Choi +1
Jun 16, 2026cs.CV

Revisiting Structural Dependency in Autoregressive Multi-Task Table Recognition via Order-Independent Cell-Level Representations

Multi-task table recognition jointly addresses table structure prediction, cell localization, and cell content recognition within a unified framework. Existing approaches often rely on autoregressive decoders to generate table structures and reuse their hidden states for cell localization and content recognition. This autoregressive generation process can make cell representations order-dependent, degrading global consistency across cells. This paper proposes a structural refinement module that produces order-independent cell features through non-causal attention. This design enables parallel inference of cell contents while conditioning each cell on global context encoded in the refined features. Experiments on two large datasets demonstrate consistent gains in cell localization and end-to-end recognition, while reducing overall inference time by around threefold.
Takaya Kawakatsu
Jun 13, 2026cs.LG

PHINN: Persistent Homology Inspired Neural Network for Rare-Event Time Series Generation

Rare events in time series are critical to model but hard to learn due to data scarcity. Current generative models struggle with extreme values. We observe that rare events leave distinct topological fingerprints - transitions in Betti numbers from point-cloud embeddings - that are more stable and discriminative than statistical moments. We introduce PHINN, a flow-matching framework using dynamic Betti curves as conditioning signals and a persistence landscape loss for homology consistency. It scales to multivariate data, includes a natural-language interface to set Betti targets, supports cross-domain meta-learning and few-shot generation, and provides certified adversarial robustness. On financial, epidemiological, and multi-modal benchmarks, PHINN outperforms statistical and diffusion baselines in topological fidelity (beta-RMSE down 41-63%, transition accuracy up 84%) and matches jump-diffusion models in tail coverage while exceeding them in shape fidelity. All results have 95% confidence intervals.
Emre Yusuf, Ren Takahashi, Jayabrata Bhaduri
Jun 13, 2026cs.LG

LLMs on Tabular Data with Limited Semantics: Evidence from Industrial Car Retrofit Prediction

Industrial retrofit planning depends on structured operational data rather than free text: planners must estimate whether a newly registered prototype will require a retrofit, which retrofit package it will need, and how long the work will take. We study an industrial dataset linking a prototype-registration system (284,271 vehicles) with a retrofit-management system (48,716 cleaned visits), and compare strong tabular machine learning baselines with three LLM-based strategies on row-serialized inputs: embedding features (Amazon Titan), direct prompted classification (Claude Sonnet 4), and an ML+LLM stacking approach. Across binary occurrence prediction, 15-way retrofit-type classification, per-visit duration regression, and an aggregated monthly benchmark, classical tree ensembles remain the strongest standalone models. However, the LLM results reveal a consistent pattern: embeddings remain useful on tables (binary AUC = 0.982), direct prompting collapses once semantic signal is stripped by hashing (binary AUC = 0.500; multiclass weighted F1 = 0.018), and hybrid stacking yields the best manually built multiclass model (weighted F1 = 0.626). On the monthly benchmark, lag-based machine learning outperforms time-series foundation models, though Chronos-small remains competitive in zero-shot forecasting. The results suggest that on privacy-constrained industrial tables, LLMs are more effective as complementary components than as replacements for strong tabular baselines.
Aina Vila Pons, Ioannis Tzachristas, Constantinos Antoniou
Jun 11, 2026cs.LG

Where Computation Lives Inside TabPFN: Causal Localisation of Attention Head Function

We present the first causal mechanistic analysis of a tabular foundation model, investigating how TabPFN 2.5's feature wise attention heads distribute computation across layers. Using activation patching, ablation, and attention entropy across two synthetic regression datasets, we find clear temporal specialisation: one head's causal necessity dominates that of the others by 2 to 5 times at peak layer, with its dominant layer shifting across tasks of different complexity, while the remaining heads exhibit symmetric late layer profiles. Attention entropy and patching provide convergent evidence for the computationally active layers of the dominant head. We additionally investigate inference time steerability via contrastive activation steering, which fails to transfer across samples. We attribute this result to TabPFN's in context learning mechanism, which encodes task structure through context dependent attention rather than the stable parametric directions that make steering tractable in language models.
Atharva Gupta, Dhruv Kumar, Murari Mandal +1
Jun 10, 2026cs.LG

Tabular Foundation Models for Clinical Survival Analysis via Survival-Aware Adaptation

Predicting time-to-event outcomes such as mortality is a fundamental task in clinical decision-making, commonly addressed through survival analysis. While classical statistical and deep learning approaches have been widely studied, they typically require task-specific training and sufficient labeled data. Recent advances in tabular foundation models offer a new paradigm by learning general-purpose representations for structured data. However, their applicability to censored time-to-event prediction in clinical settings remains underexplored, as typical applications are restricted to discrete classification rather than survival analysis tasks. In this work, we propose a lightweight adaptation approach for applying tabular foundation models to clinical survival analysis by directly training a survival-aware head on top of the pretrained representations. We study representative architectures, including TabPFN, TabDPT, and TabICL, and adapt them using a multi-task logistic regression (MTLR) head to model right-censored time-to-event outcomes. We evaluate this approach on a diverse set of public survival benchmarks and two large-scale ICU cohorts, MIMIC-IV and eICU. Our results show that this transfer learning approach achieves competitive or superior performance compared to strong baselines. On MIMIC-IV, TabDPT-FT-MTLR reaches a C-index of 0.856, corresponding to a relative improvement of +1.4% over the best non-FM baseline (DeepSurv, 0.844) and +6.7% over the best zero-shot model (0.802). On eICU, TabICL-FT-MTLR achieves 0.797, yielding gains of +1.7% (DeepSurv, 0.784) and +6.4% (0.749), respectively. These findings highlight the importance of combining pretrained tabular representations with survival-aware objectives and suggest that tabular foundation models provide a practical and effective alternative for clinical survival prediction.
Minh-Khoi Pham, Luca Cotugno, Alina Sirbu +3
Jun 10, 2026cs.CV

Parameter-Efficient Adapter Tuning for Tabular-Image Multimodal Learning

Tabular-image multimodal learning aims to improve predictive modeling by jointly using structured tabular attributes and visual data. Although pretrained encoders provide strong modality-specific representations, full fine-tuning can be computationally expensive, while keeping encoders frozen may limit task-specific adaptation. We propose the Tabular-Image Adapter (TI-Adapter), a modality-specific adapter-based fine-tuning framework for efficient multimodal adaptation. TI-Adapter freezes the pretrained tabular encoder and learns an adapter after the extracted tabular embedding, while adapting the image branch with embedding-level and bottleneck-level adapters instead of full fine-tuning. Experiments on 20 tabular-image datasets show that TI-Adapter achieves competitive or better predictive performance than full fine-tuning while using substantially fewer trainable parameters. Ablation studies further demonstrate the importance of adapter placement for balancing performance and practical efficiency.
Jiaqi Luo
Jun 10, 2026cs.LG

TAROT: Task-Adaptive Refinement of LLM-prior Graphs for Few-shot Tabular Learning

Few-shot tabular learning provides a cost-effective approach for real-world applications where annotation is costly and collecting sufficient samples for new tasks is difficult. Existing Traditional and LLM-based methods have demonstrated effectiveness in few-shot scenarios. However, traditional methods need additional training on unlabeled or generated data, which incur significant computational overhead. In addition, LLM-based methods that directly feed raw tabular data into LLMs raise privacy and compliance concerns. More importantly, both paradigms largely overlook the semantic relationships between features, which provide structural and semantic prior for constructing a semantic graph. Semantic graph is essential for modeling meaningful feature interactions in few-shot scenarios. In this paper, we propose TAROT, a GNN-based framework that encodes the structural and semantic prior by constructing and refining a task-adaptive semantic graph from this prior, thereby improving predictive performance in few-shot tabular learning. TAROT first encodes heterogeneous tabular data into unified node semantic representations via a Unified Semantic Tabular Node Encoder (USTNE). Then, it prompts LLMs to infer the semantic relationship between features based on the task description and feature names to construct a semantic graph. To mitigate structural noise introduced by the hallucination of LLMs, TAROT introduces Task-adaptive Semantic Graph Refinement that prunes spurious or task-unrelated edges and adds missing task-related ones, aligning the graph structure with the downstream objective. Finally, a GNN performs message passing over the refined graph to capture task-related semantic dependencies for prediction. Extensive experiments on various few-shot tabular learning benchmarks demonstrate the superior performance of TAROT, establishing it as a state-of-the-art approach in this domain.
Ruxue Shi, Yili Wang, Mengnan Du +3
Jun 9, 2026cs.LG

CRUMB: Efficient Prior Fitted Network Inference via Distributionally Matched Context Batching

Prior-fitted networks (PFNs) are a promising class of tabular foundation models that perform in-context learning, whereby the entire labelled training set is supplied as context, and predictions for test queries are produced in a single forward pass. However, the quadratically scaling self-attention mechanism in many PFN architectures makes inference prohibitive for very large training datasets. We propose CRUMB (Clustered Retrieval Using Minimised-MMD Batching), a three-stage inference wrapper that (i) clusters the test queries, (ii) selects a small, distributionally matched training subset for each cluster by greedily minimising the maximum mean discrepancy (MMD), and (iii) runs exact PFN inference on each reduced-context batch. CRUMB is architecture-agnostic and requires no retraining. On the 51-dataset TabArena benchmark, evaluated across three PFN architectures (TabPFNv2, TabICLv1, TabICLv2), we show that CRUMB outperforms similar state-of-the-art context selection strategies. We also show that CRUMB is resilient to covariate drift, as the MMD-minimisation step naturally helps align the training context distribution to match the current test batch distributions.
Jamie Heredge, Mattia J. Villani, Pranav Deshpande +2
Jun 9, 2026cs.RO

Bridging the sim2real gap in the table tennis robot with a transformer-based ball states predictor

Robotic table tennis is a representative benchmark for high-speed, closed-loop robotic control in dynamic environments, where accurate and fast prediction of ball states is critical for reliable planning and control. Physics-based approaches rely heavily on accurate parameter identification and precise initial state, while learning-based methods often struggle to capture long-range temporal dependencies and are typically trained on limited or simulated data. We propose a transformer-based framework for table tennis ball state prediction that leverages attention mechanisms to model long-range temporal correlations directly from historical observations, without relying on explicit flight or bounce models. To support robust learning and generalization, we collected a large-scale real-world dataset from players of varying skill levels and diverse ball cannon configurations. The combination of a high-capacity transformer architecture and extensive real-world data enables accurate long-horizon forecasting. Building on this capability, we introduce a plug-and-play sim-to-real transfer strategy, Swap Predictor at Deployment (SPAD), which replaces the physics-based simulator used during training with the proposed real-world-trained predictor at deployment, improving the sim-to-real transferability of the policy without requiring retraining. We demonstrate that this simple substitution effectively narrows the sim-to-real gap while preserving the efficiency and scalability of simulation-based training.
Yin Bi, Christian Conti, Bilan Yang +3
Jun 8, 2026cs.AI

TABVERSE: Benchmarking Cross-Format Table Understanding in LLMs and VLMs

Large Language Models (LLMs) and Vision-Language Models (VLMs) are increasingly evaluated on table reasoning tasks, but the role of table representation remains under-explored. In practice, the same table content may appear in different structural formats, such as HTML, Markdown, and LaTeX, or as rendered images. However, existing evaluations often let content, format, layout, and modality vary together, making it difficult to isolate representation effects. We introduce TABVERSE, a controlled multimodal table benchmark that aligns the same table content across multiple structural formats and rendered images, with question category and difficulty tags. This design enables systematic evaluation of representation effects while holding table content fixed. We evaluate LLMs and VLMs across three tasks: Question Answering (QA), Structural Understanding Capability (SUC), and Structure Reconstruction (SR). Our results show that representation choice substantially affects table understanding. Models generally perform better with structured text than with rendered images, but the size of this gap depends on the task, model, and format. HTML is often the most robust text format, while row-sensitive structural tasks and syntactically usable LaTeX reconstruction remain challenging. These findings show that table representation is a key factor in reliable table evaluation.
Momina Ahsan, Sarfraz Ahmad, Ming Shan Hee +2
Jun 8, 2026cs.AI

TRL-Bench: Standardizing Cross-Paradigm Representation-Level Evaluation of Tabular Encoders

Tabular encoders are usually evaluated inside task-specific end-to-end pipelines, so models from different training paradigms are difficult to compare directly even when they operate on similar tabular signals. We introduce TRL-Bench, a multi-granular tabular representation learning (TRL) benchmark that standardizes cross-paradigm representation-level evaluation: each encoder exports row-, column-, or table embeddings through its supported wrapper, and shared lightweight heads probe them across three suites: TRL-CTbench (column/table), TRL-Rbench (row), and TRL-DLTE (compositional Data-Lake Table Enrichment spanning all three granularities). To support this standardized setting, we release curated benchmark assets and task reformulations, including 50 OpenML tables with 123 verified targets, 16 row-pair linkage rewrites, and a 47,772-table DLTE lake derived from 1,379 parent tables. Across 20 models and 16 tasks, TRL-Bench shows that once downstream conditions are standardized, encoder quality is capability-specific rather than captured by a single leaderboard. In TRL-CTbench, generic text encoders often lead on tasks with strong surface-text signal, while tabular specialists win where their pretraining objective aligns with the task. In TRL-Rbench, within-table prediction and cross-table linkage favor different training regimes, with atomic linkage performance correlating strongly with the row-matching stage of DLTE pipelines. In TRL-DLTE, the strongest pipelines combine capability-matched specialists rather than reuse a single encoder, and top end-to-end quality depends on non-additive compositional fit rather than per-stage marginal rank alone. TRL-Bench provides a common protocol for measuring reusable signal in exported tabular representations under shared downstream conditions. Code and data: https://github.com/LOGO-CUHKSZ/TRL-Bench
Wei Pang, Xiangru Jian, Hehan Li +10
Jun 8, 2026cs.LG

BSTabDiff: Block-Subunit Diffusion Priors for High-Dimensional Tabular Data Generation

High-Dimensional Low-Sample Size (HDLSS) tabular domains (e.g., omics) are characterized by n≪mn \ll m, where nn = number of samples, and mm = number of features. Such domains often exhibit strong local correlation groups, sparse cross-group dependencies, heavy-tailed non-Gaussian marginals, heteroscedastic noise, and structured missingness, making direct density learning in Rm\mathbb{R}^m ill-conditioned since n≪mn \ll m. We propose BSTabDiff, a block-subunit generative framework that partitions the mm observed features into MM latent blocks (M≪mM \ll m) and generates each block via a shared low-dimensional subunit variable, concentrating global dependence learning in the compact block-latent space RM\mathbb{R}^M while decoding to the full feature space with copula-driven dependence, flexible per-feature marginals, and explicit missingness mechanisms. BSTabDiff supports modern deep priors on block latents, including diffusion and normalizing flows, enabling stable synthesis and controllable benchmark generation in the HDLSS regime. Empirically, BSTabDiff produces more realistic and stable high-dimensional synthetic data when compared with unstructured tabular generators on HDLSS data.
Al Zadid Sultan Bin Habib, Md Younus Ahamed, Prashnna Gyawali +2
Jun 6, 2026cs.CR

SoK: Reconstruction Attacks on Synthetic Tabular Data (Insights from Winning the NIST CRC)

Synthetic data is increasingly promoted as a privacy-preserving substitute for releasing sensitive tabular records, yet its central adversarial threat (reconstruction, the recovery of an individual's hidden attribute values from a synthetic release and a handful of known quasi-identifiers) has been studied only in scattered, hard-to-compare settings. We systematize reconstruction (equivalently, attribute inference) attacks on de-identified and synthetic tabular data. We contribute a taxonomy that organizes attacks by the structure they exploit; a broad, controlled empirical evaluation, pitting fourteen attacks against thirteen synthetic data generation (SDG) methods across five benchmark datasets; and a set of new attacks that fill gaps in the taxonomy, one of which (CoBP-RA) is the strongest attack we measure. We also introduce a methodology for interpreting what attack success means: a memorization test that distinguishes reconstruction of the population distribution from memorization of training records, and a reduction that places reconstruction and membership inference on a single comparable scale. Our findings: the choice of SDG method governs risk far more than the choice of attack; differential privacy reduces reconstruction steadily up to epsilon approximately 10, above which reconstruction risk levels off for all six DP mechanisms we sweep, bounded by what each synthesizer can represent rather than by its noise; de-identification methods are the most exposed, with diffusion the only synthesizer close behind; and most reconstruction reflects distributional structure rather than memorization, concentrating individual risk on atypical records. Our attacks and infrastructure are externally validated by our first-place finish in the 2025 National Institute of Standards and Technology (NIST) Collaborative Research Cycle.
Steven Golob, Sikha Pentyala, Martine De Cock
Jun 6, 2026cs.CL

TLRD: Teaching LLMs to Reason over Tabular Data with Tri-Level Rationale Distillation

Tabular data is a primary medium for storing real-world information, driving many industrial applications of machine learning. Traditional predictors achieve strong predictive performance but do not provide readable, case-specific explanations essential for decision-making. Large Language Models (LLMs) can naturally bridge this gap by generating predictions alongside explanations. However, dataset-specific patterns, such as feature distributions and interactions, make tabular data difficult for LLMs to understand and reason over, while label-only fine-tuning improves performance at the cost of catastrophic forgetting. To address this problem, we propose Tri-Level Rationale Distillation (TLRD), a framework that converts label-only tabular datasets into structured rationale supervision for LLMs. TLRD uses a high-capacity teacher to synthesize a rationale corpus grounded in three complementary levels of evidence: instance-level feature, dataset-level distributional context, and comparison-level retrieved neighbors, then distills the rationale into student LLMs, enabling zero-overhead prediction and grounded explanation from raw features only. Experiments on multiple domain datasets show that TLRD significantly closes the performance gap between LLMs and state-of-the-art tree ensembles while producing grounded and readable explanations, offering a valuable reference for high-stakes decision-making.
Tianyuan Liang, Xuwei Tan, Lei Shi +6
Jun 6, 2026cs.LG

Differentially Private Synthetic Data via APIs 4: Tabular Data

This paper investigates the problem of generating synthetic tabular data with differential privacy (DP) guarantees, enabling data sharing in sensitive domains. Despite extensive study, state-of-the-art methods often focus on minimizing low-order marginal query errors and overlook the challenges posed by high-order correlations. To address this gap, we extend the Private Evolution (PE) framework, originally developed for DP-compliant image and text synthesis, to tabular data. We introduce Tab-PE -- an algorithm for synthetic tabular data generation under DP constraints. Tab-PE iteratively improves a candidate dataset via an evolutionary process that leverages tabular-specialized operators to produce variations, privately scores them, and selects the highest-quality samples to retain and propagate. In contrast to the original PE, which relies on large foundation models, Tab-PE employs heuristic operators with significantly lower computational costs, making PE more practical and scalable for tabular data. Through extensive experiments on real-world and simulation datasets, we demonstrate that Tab-PE substantially outperforms prior baselines on datasets exhibiting high-order correlations. Compared to the best baseline -- AIM, Tab-PE improves classification accuracy by up to 10% while running 28 times faster.
Toan Tran, Arturs Backurs, Zinan Lin +3
Jun 5, 2026cs.DB

RACT: Retrieval Augmented Column-Table Learning and Prediction for Multi-Table Schema Matching

Schema matching, a critical task for integrating data from diverse sources, seeks to identify correspondences between columns across different schemas. In multi-table holistic schema matching, columns with similar semantic meaning may reside in tables with different contexts due to heterogeneous schema designs, where similarity-based techniques are inadequate. The focus of this paper is exploiting referential context into schema matching by introducing RACT learning and prediction, a self-supervised framework enabling the probabilistic retrieval of candidate tables for source columns to constrain relevant column candidates. Experiments demonstrate that this approach outperforms similarity-based baselines on matching multi-table schemas. In subsequent matching experiments, constraining the column search space via top-t tables improves both average matching precision and completeness by up to +70%.
Leonard Traeger, Enas Khwaileh, Andreas Behrend +1
Jun 5, 2026cs.LG

TabSwift: An Efficient Tabular Foundation Model with Row-Wise Attention

Tabular foundation models, exemplified by TabPFN, perform prediction via in-context learning, inferring test labels directly from labeled training examples. They have demonstrated competitive performance, particularly on small-to-medium datasets. However, recent tabular foundation models often improve accuracy with increasingly complex architectures, incurring higher inference cost and limiting practical deployment. In this work, we revisit the original TabPFN design and show that a lightweight row-wise attention-only backbone can remain highly competitive with two simple enhancements: a gated attention stabilization mechanism and a small set of learnable register tokens that provide global context and improve pretraining quality. The resulting model, TabSwift, supports both classification and regression, and is competitive with stronger tabular foundation models (e.g., TabPFN v2 and TabICL) while being more efficient at inference. For latency-sensitive serving, we further introduce an adaptive layer-wise early-exit mechanism that dynamically adjusts inference depth per sample. Overall, TabSwift enables efficient and anytime tabular in-context learning for practical deployments.
Si-Yang Liu, Han-Jia Ye
Jun 5, 2026cs.LG

Trio: Learning Time-Series Forecasting with Temporal-Spatial-Sample Attention and Structural Causal Priors

Multivariate time-series forecasting requires models to reason over temporal dynamics, cross-variable dependencies, and historical input-output correspondences. Recent Prior-Data Fitted Networks (PFNs) suggest that synthetic tasks can be useful for learning transferable inference behavior. However, directly transferring this paradigm to time-series forecasting remains difficult, since temporal order, dynamic lags, and recurring historical patterns are not naturally captured by ordinary tabular priors. Motivated by this observation, we propose Trio, a sample-aware time-series forecasting architecture based on Temporal-Spatial-Sample attention. Temporal attention captures within-window dynamics, spatial attention models inter-variable dependencies, and sample attention retrieves relevant historical lookback-future pairs to guide the current prediction. Rather than claiming a fully general PFN-style forecaster, our goal is to study how historical input-output examples can be explicitly organized and reused within a forecasting model. We further introduce a Time-Series Structural Causal Model (TS-SCM) generator to create structured synthetic forecasting tasks with dynamic lags, cross-variable interactions, noise, feedback, and distributional drift. Experiments on synthetic, industrial, and public benchmarks show that the proposed architecture improves forecasting performance. Exploratory zero-shot experiments further suggest that TS-SCM-generated tasks may provide useful structural priors, while fully general PFN-style time-series forecasting remains an open problem.
Tao Chen, Yexu Zhou, Zhi Gong +9
Jun 5, 2026cs.LG

Bias in Filter Feature Selection Evaluation: A Meta-Analysis of Datasets, Baselines, and Experimental Design Choices

Background: Since 1990 many feature selection methods have been proposed across heterogeneous applications. To validate the usefulness of a new method, it needs to be compared against at least one baseline method from the existing literature on a feature selection task using at least one dataset. Recent developments in tabular Deep Learning (DL) and data valuation in Machine Learning (ML) suggest that the evaluation of new methods, algorithms, and models may be consciously or unconsciously biased. We hypothesise that a similar trend exists in feature selection (FS), particularly in filter feature selection (FFS). The aim of this study is therefore to examine FFS studies to identify factors that influence the evaluation and that might consist entry point for biases in order to recommend stronger principles for FFS evaluation. Methods: We analyse a sample of 28 high profile FFS studies published between 1994 and 2025. The analysis provides reflections on how to examine FFS studies, highlights lessons learned throughout the process, and gives five evidence-based recommendations for future FFS evaluation. Results: Multivariate Linear Regression analysis achieved a score of R2=0.33R^2=0.33. It means that 33% of the variance in the performance of new methods against chosen baselines (win rate) is explained by the number of datasets (#Datasets), the number of baselines (#Baselines), and the number of new methods (#NewMethods). Discussion: R2=0.33R^2=0.33 is considered medium explanation; which is promising given that this is the first such study. The medium explanation result is due to the fact that win rate is influenced by additional factors such as the maturity of the feature selection domain, the type of datasets and baselines, and the simplicity of the regression model used to explain the relationship.
Malick Ebiele, Malika Bendechache, Rob Brennan
Jun 3, 2026cs.LG

Towards Unified and Data-Efficient Prognostics and Health Management with Tabular Foundation Models

Data-driven Prognostics and Health Management (PHM) uses time-varying condition-monitoring data to diagnose system states and estimate remaining useful life in engineered assets. These tasks are central to maintenance planning, but industrial PHM data are often fragmented, partially observed, and poorly labeled, which hinders supervised learning. Foundation models offer a route toward reusable predictive systems, yet most time-series foundation models are designed for forecasting and assume long, coherent, regularly sampled sequences. To address this gap, we propose a framework for applying Tabular Foundation Models to industrial time series using in-context learning, and we evaluate them on a variety of PHM tasks. By converting raw unit-level signals into tabular rows, we show that these models perform well across multiple tasks - including prognostics, and diagnostics - and are highly data efficient. We compare them directly with sequence models, transformer baselines, and gradient-boosted trees under a common evaluation protocol. The results indicate that tabular foundation models achieve the best average ranks across prognostic and diagnostic tasks. Our findings further show that PFN-based models are competitive in low-data regimes, that temporal context can be preserved in the tabular representation, and that performance depends on representative context construction under subsampling. These results demonstrate that tabular foundation models provide a practical and general interface for heterogeneous PHM problems.
Raffael Theiler, Lev Telyatnikov, Leandro Von Krannichfeldt +1
Jun 3, 2026cs.LG

GOTabPFN: From Feature Ordering to Compact Tokenization for Tabular Foundation Models on High-Dimensional Data

We investigate how to make small tabular foundation models effective for High-Dimensional, Low-Sample Size (HDLSS) tabular prediction without retraining large backbones. We introduce Graph-guided Ordering with Local Refinement (GO-LR), show its equivalence to weighted Minimum Linear Arrangement, and interpret the practical solver as a TSP-path-style surrogate. We propose GOTabPFN,which builds on GO-LR, and a Neuro-Inspired Subunit Compression (NSC) unit to pool locally adjacent ordered features into meta-features, yielding a compact representation that makes TabPFN-style prediction practical in HDLSS regimes. Across tabular benchmarks, GOTabPFN improves stability and accuracy under tight token budgets.
Al Zadid Sultan Bin Habib, Md Younus Ahamed, Prashnna Kumar Gyawali +2
Jun 3, 2026cs.LG

Data-efficient flood depth prediction through domain-aware coreset selection and tabular foundation models

Near-real-time flood depth prediction demands surrogate models that are accurate, fast, and transferable across watersheds. Supervised surrogates can match physics-based simulators in accuracy but need millions of training rows per watershed and cannot extrapolate beyond their original mesh. We propose a domain-aware coreset construction pipeline that conditions a tabular foundation model at inference time. The pipeline stratifies storms by return period and most-affected watershed, then samples hexagons with a target-aware spatial selector. With 0.7% of the per-watershed training pool, the model attains a mean R2R^2 of 0.663 across nine Houston-area watersheds, within 98.5% of the supervised reference (R2R^2 = 0.673). It transfers to held-out watersheds without task-specific retraining, staying ahead of a coreset-trained supervised baseline. On real storms it exceeds the supervised reference on a far out-of-distribution case and trails it on a mostly in-distribution one. Domain-aware coreset construction lets tabular foundation models deliver data-efficient, watershed-transferable flood predictions without per-watershed training.
Lipai Huang, Adithi Srinath, Manas Singh +2
Jun 3, 2026cs.LG

Towards Pretraining Text Encoders for TabPFN

Tabular foundation models, such as TabPFN, achieve strong performance on tabular datasets with numerical and categorical data, but do not natively handle high-cardinality text features. Standard pipelines, therefore, embed text with a language model and compress the resulting vectors with PCA into a small number of scalar features before inputting them into TabPFN. This creates an information bottleneck: most embedding dimensions are discarded, and the compressed representation must then be expanded again by TabPFN's feature encoder. End-to-end alternatives can avoid PCA, but they require large amounts of pretraining data containing text cells and usually perform subpar compared to tabular foundation models that were pretrained on large amounts of synthetic data. Inspired by modality-alignment approaches like LLaVA (vision-to-LLM token projection) and TableGPT-style systems (table-to-LLM token projection), we introduce the TabPFN Text Adapter (text-to-TFM token projection). We freeze both the sentence encoder and TabPFN, and train only a lightweight adapter that maps text embeddings into a short sequence of tokens in TabPFN's embedding space. This design removes the PCA bottleneck, preserves TabPFN's numerical strengths, and is more efficient to train than end-to-end text-tabular pipelines.
Mustafa Tajjar, Alexander Pfefferle, Lennart Purucker +1
Jun 3, 2026cs.LG

SurvPFN: Towards Foundation Models for Survival Predictions

Tabular foundation models (TFMs) have made rapid progress in standard classification and regression, but time-to-event survival prediction tasks have remained largely untouched. Unlike in standard regression tasks, survival prediction models must account for censored data. Standard TFMs cannot handle natively censored data, leading to biased and inaccurate predictions, making them unsuitable for real-world applications. To overcome this fundamental limitation, we propose \texttt{SurvPFN}, a prior-data fitted network (PFN), for survival prediction tasks. We pretrain \texttt{SurvPFN} on millions of synthetic survival prediction tasks to learn survival via distributional regression that accounts for censored data. \texttt{SurvPFN} works by (1) generating data with Weibull event times and a non-informative censoring mechanism; (2) integrating a censored event indicator; and (3) minimizing a censored negative log-likelihood. On SurvSet, a collection of real-world survival tasks, \texttt{SurvPFN} is highly competitive with classical and deep survival baselines without per-dataset fitting, a survival-specific architecture, or feature engineering. We show that survival can be treated as a continuous-time distributional regression problem with censored loss, unlocking the power of PFNs for time-to-event predictions.
Samuel Böhm, Lennart Purucker, Frank Hutter +1
Jun 3, 2026cs.LG

LimiX-2M: Mitigating Low-Rank Collapse and Attention Bottlenecks in Tabular Foundation Models

Tabular foundation models (TFMs) increasingly rival tree ensembles, but their performance is often compute-inefficient: with standard affine scalar tokenization, each feature injects value variation through an essentially one-dimensional channel, and feature IDs/positional signals cannot increase within-feature value degrees of freedom, yielding weak early-layer value sensitivity and redundant hidden states. We present a unified tokenize-and-route framework for strong TFMs: RaBEL expands each scalar into compact localized RBF features (optionally exponent-gated) to improve conditioning and shallow-layer effective rank, while a reordered bidirectional block S->N->F aligns computation with the readout by aggregating cross-sample context before feature mixing and using attention pooling. Together, these changes yield LimiX-2M, a 2M-parameter model that outperforms larger TabPFN-v2 and TabICL baselines on widely used tabular benchmarks while reducing training and inference costs. These results highlight value-aware tokenization and readout-aligned routing as key levers for improving the accuracy--efficiency trade-off in TFMs. Model checkpoints and inference code are available at https://github.com/limix-ldm-ai/LimiX.
Yuanrui Wang, Xingxuan Zhang, Han Yu +7
Jun 3, 2026cs.LG

RowNet: A Memory Transformer for Tabular Regression

Real estate valuation is a structured regression problem in which prices are governed by heterogeneous feature types, sparse regional effects, nonlinear interactions, and the practical logic of comparable properties. Standard multilayer perceptrons treat each row as an isolated vector and must learn locality, scale sensitivity, and categorical matching from supervision alone. Gradient-boosted decision trees provide strong tabular baselines, but their feature-centric splitting mechanism does not explicitly model the retrieval of similar historical observations. This paper presents RowNet, a retrieval-based neural architecture for real estate price-per-square-meter prediction. RowNet represents a query property through pairwise similarity features against a memory bank of labeled properties. A first retrieval layer estimates a coarse target from feature-only similarities. A second layer augments the memory comparison with target-consistency features and uses multiple learned attention heads to retrieve complementary comparable sets. A final mixture-of-experts module combines learned gating, residual correction, entropy regularization, and head-diversity regularization to produce the prediction.
Askat Rakhymbekov, Gulshat Muhametjanova
Jun 3, 2026cs.LG

OpenRFM: Dissecting Relational In-Context Learning

Relational Foundation Models (RFMs) promise a single pre-trained predictor that, given any relational database, returns predictions in one forward pass via relational in-context learning (ICL). Yet a substantial gap separates open RFMs from their commercial counterparts, and the origin of this gap has not been systematically understood. We dissect a representative framework, the Relational Transformer (RT), from two perspectives. Model side: we show that RT performs relation-level ICL, and a kernel regression view shows it fails when sparse label-cell coverage yields an underdetermined regression. Data side: we ablate RT's pre-training source and find that existing synthetic-only pre-training and in-distribution pre-training drive the same architecture into different regimes, lazy vs. feature-learning. Probing this gap reveals that the missing ingredient is a support-identifiable relational latent in the label-generation process. These two diagnoses translate into (1) a dual-stage ICL architecture that combines the relational backbone with a batch-level ICL layer lifted from a pre-trained tabular foundation model to overcome relation-level label scarcity, and (2) a homophily-aware synthetic plus continual real-data pre-training mixture, augmented with a prototype-based regularization. These choices define OpenRFM, a simple yet effective RFM that improves average task performance by approximately 30% over the RT backbone and surpasses the commercial model KumoRFMv1 on a large set of evaluation tasks.
Zhikai Chen, Junyu Yin, Jialiang Gu +5
Jun 2, 2026cs.LG

Staying Alive: Uncensored Survival Analysis with Tabular Foundation Models

Survival Analysis (SA) is a statistical framework that models the time span until some event of interest occurs. Widely used in several domains, including healthcare and churn prediction, a central challenge in its applicability stems from the time of the event being partially observed or \emph{right-censoring}. Tabular Foundation Models (TFM) have attracted significant interest in recent years due to their ability to perform prediction tasks in a single forward pass, requiring no dataset-specific parameter fitting. Despite their success, their application to prediction tasks on time-to-event data remains difficult due to right censoring. In this work, we present a training-free method to survival regression by leveraging TFMs to both predict the time of the event and iteratively impute right-censored data. Our method uses a TFM to construct an Accelerated Failure Time (AFT) model requiring no training beyond fitting a single scalar parameter. Subsequently, by building on the Buckley-James estimator, we introduce a non-parametric in-context estimator for right-censored data. Our experiments on standard survival analysis benchmarks show that our method is competitive with several parametric and semi-parametric survival regression models that require training, including Cox regression and parametric AFT models.
Mariana Vargas Vieyra
Jun 2, 2026cs.LG

Speedrunning Tabular Foundation Model Pretraining

Pretraining cost is a major bottleneck for research on tabular foundation models, slowing the iteration cycle for new architectures, priors, and optimization ideas. Yet the community lacks a simple way to compare and accumulate pretraining speedups. We introduce a community speedrun for nanoTabPFN: contributors modify a single-file training script and compete to reach a fixed downstream ROC AUC target on subsampled TabArena using one NVIDIA L40S GPU. The current best record reaches the target in 0.92 minutes, an 81x speedup over the 74.32 minute baseline while using 22x fewer synthetic datasets. The speedrun format provides a simple protocol for the community to add, verify, and stack pretraining improvements, with the leaderboard open to contributions. Code and records are available at https://github.com/borawhocodess/modded-nanotabpfn.
Salih Bora Ozturk, Alexander Pfefferle, Frank Hutter
Jun 1, 2026cs.LG

TabPrep: Closing the Feature Engineering Gap in Tabular Benchmarks

Progress in tabular machine learning has largely focused on increasingly sophisticated model architectures. At the same time, feature engineering remains a critical yet underexplored component of real-world modeling pipelines that is entirely absent from modern benchmarks, which creates an unquantified evaluation gap. In this work, we introduce TabPrep, a lightweight preprocessing pipeline composed of feature generators that are carefully designed to target three specific structural data patterns. We show that many widely used model classes exhibit predictable blind spots to these patterns and that systematic feature engineering alone can establish new peak performance. Across the TabArena benchmark, integrating TabPrep into model training and tuning consistently improves performance for tree-based, neural, linear, and foundation models, often surpassing gains achieved by model-centric innovations alone. TabPrep outperforms previous automated feature engineering approaches in performance, efficiency, and applicability across datasets, enabling integration into large-scale benchmarks. By releasing TabPrep (see https://github.com/atschalz/tabprep), we enable researchers to integrate feature engineering into their benchmarking setup, filling a longstanding gap in tabular evaluations.
Andrej Tschalzev, Nick Erickson, Yuyang Wang +4
Jun 1, 2026cs.LG

When Tabular Foundation Models Transfer Across Modalities: A Systematic Evaluation Across 95 Datasets, 7 Modalities, and Two Regimes

We present a single classification pipeline that combines an Equiangular Tight Frame (ETF) preprocessing stage with a tabular foundation model for in-context inference, applied identically across modalities once data is mapped to fixed vector representations. We evaluate it on 95 datasets spanning seven signal modalities -- vision, audio, speech, text, molecular, time-series, and tabular. The main methodological contribution is to fix the comparison object: throughout the paper, performance is judged against the strongest lightweight tuned baseline on the same frozen features, while oracle selection, deployed selection, and specialized fine-tuning are reported separately. The pipeline is broadly competitive with strong lightweight tuned baselines on the same frozen features. It does not match the very best specialized models or heavily tuned pipelines on every task, but it stays close, and it runs much faster -- typically 4 to 200 times faster than full backbone fine-tuning, often at comparable quality. We describe how to deploy the pipeline in practice: when to apply ETF preprocessing, how to stop its training without a validation split, how to set up the in-context classifier, and how to calibrate the resulting probabilities. The calibration step is non-cosmetic: TabICL produces well-calibrated probabilities by construction, ETF preprocessing initially disrupts that calibration, and the post-hoc rescaling restores it -- yielding a per-prediction confidence signal that practitioners can use as a trust threshold for confidence-gated deployment. We also report where the pipeline should not be expected to help, and how to identify those cases in advance.
Julien Lafrance
Jun 1, 2026cs.LG

LLM-as-a-Discriminator: When Synthetic Tables Still Look Real

Privacy and data sharing are often in tension. Many organizations use synthetic data to reduce privacy risk and still share useful data. For tabular data, auditing privacy remains hard. In many cases, even humans cannot easily tell if a table is real or synthetic. In this paper, we propose a method based on LLM discrimination. We ask an LLM to classify each table sample as REAL or SYNTHETIC. We test two settings: C1 with table only, and C2 with table plus distributional metadata. We use LLaMA as an open model and Gemini as a reference model. In our experiments, we run three synthesis models, CTGAN, TVAE, and Gaussian Copula, on two public datasets, UCI Adult and ACS Census. We collect 451 valid trials. Our results show clear differences between models. On Adult, LLaMA reaches DRS=0% in reported cells, while Gemini reaches DRS=100% for CTGAN and TVAE. On Census, LLaMA predicts SYNTHETIC for most samples, while Gemini stays high in C1 but drops for CTGAN and TVAE in C2. We also compare with a classifier two-sample test (C2ST) and record linkage as distributional baselines, and with a human pilot of 2 annotators and 240 trials. Our results show that LLM discrimination is a practical privacy audit signal when model choice, per provider reporting, and data encoding are handled with care. For reproducibility, code and experiment scripts are available at https://github.com/SlokomManel/LLM-as-a-Discriminator.
Manel Slokom, Malek Slokom, Thierno Kante
May 31, 2026stat.ML

On the Uncertainty Quantification Ability of Tabular Foundation Models

Foundation models (FMs) have achieved substantial success in generalizing across tasks without problemspecific training or fine-tuning. However, many critical applications in mechanics and computational science require not only accurate predictions but also reliable uncertainty quantification (UQ). Herein we investigate the UQ capabilities of tabular FMs in regression tasks through a comprehensive empirical study comparing Tabular Prior-Data Fitted Networks (TabPFN) against Gaussian processes (GPs). We systematically evaluate these two methods across a host of regression problems with varying complexity, dataset sizes, and input dimensionalities. We use a default setting to build all the GPs and for a fair comparison against TabPFN v2.5. Our findings highlight an important trade-off between explicit and learned priors: while TabPFN achieves highly competitive performance for complex, high-dimensional problems with sufficient data, GPs often provide superior predictive accuracy and UQ in data-scarce settings. Moreover, when the chosen kernel constitutes a good prior for the underlying function, GP performance can substantially exceed that of TabPFN. Our results can be reproduced from https://github.com/kianswarehouse/GPvsPFN.
Tyler R. Johnson, Kian Ben-Jacob, Nima Negarandeh +2
May 31, 2026cs.CV

HakushoBench: A Japanese Chart and Table VQA Benchmark from Governmental White Papers

Understanding chart and table images is essential for applying vision-language models (VLMs) to real-world document understanding. While English benchmarks have advanced rapidly, non-English counterparts remain scarce, leaving it unclear whether this progress generalizes across languages. A key obstacle is the difficulty of collecting realistic and diverse non-English chart and table images at scale. To address this, we leverage governmental white papers as a scalable source for benchmark construction beyond English, as they contain naturally occurring charts and tables across diverse formats and domains and are freely accessible in many countries. As a first instantiation, we introduce HakushoBench, a challenging Japanese chart and table VQA benchmark built from 33 governmental white papers. HakushoBench contains 2,053 images spanning over 10 image types, with manually annotated QA pairs, designed to assess deep and holistic understanding of charts and tables, rather than local visual cues alone. Experiments across a broad range of VLMs demonstrate that HakushoBench remains challenging for open-weight models: the best open-weight model achieves only 58.6% accuracy, and a 34.9-point gap between open-weight and proprietary models highlights substantial room for improvement in complex chart and table understanding. We release our dataset and code.
Issa Sugiura, Shuhei Kurita, Yusuke Oda +1
May 30, 2026cs.CV

Images as Tables: In-Context Learning with TabPFN for Low-Data Detection of AI-Generated Images

AI-generated image detection is a moving-target problem: detectors trained on one generator often fail when a new generator appears, and only a few labeled examples are available. We study a simple image-to-table formulation for this regime, where each image is encoded by a frozen DINOv3 backbone, its CLS feature is reduced to a 500-dimensional structured row with PCA, and TabPFN performs real/fake classification by in-context tabular inference rather than task-specific classifier training. This turns fake-image detection into low-data structured prediction over learned visual features, making detector adaptation depend on the labeled context set instead of gradient-based fine-tuning. On GenImage, LATTE, a recent state-of-the-art detector, remains stronger when many labeled samples from all generators are available, by 7.4% in the largest pooled setting, but DINOv3-PCA-TabPFN is stronger in the practically important low-data regime, outperforming LATTE by up to 8.2%, and in transfer settings where the detector must generalize from one generator to another. These results position tabular foundation models as a strong complementary adaptation mechanism for image forensics, shifting adaptation from detector retraining to lightweight in-context updates with a small labeled set of examples. Code URL: https://github.com/jpwalter30/Towards-Generalizable-Detection-of-AI-Generated-Images
Jan Philip Walter, Shashank Agnihotri, Margret Keuper
May 30, 2026cs.LG

TabChange: Precise Attribute Changes in Tabular Data

Modifying an attribute in tabular data often introduces an unnatural instance by breaking its relationships with other attributes. The modified instance must be both natural and minimally changed from the original instance. This paper addresses the challenge of generating such a modified instance. We identify key limitations in existing approaches: generative models either don't support instance-level attribute editing or, in the case of methods like CVAE, retain attribute information in the latent space, leading to unnecessary modifications. To solve this, we propose TabChange, an approach that analyzes the relationship between the attribute of interest and other attributes in the dataset. If the relationship is weak, it simply flips the attribute; if it is strong, it uses an adversarial framework that removes information about the attribute in the latent space representation. This removal enables precise modifications, making only the necessary adjustments to maintain naturalness. Our experiments across seven datasets show that TabChange generates counterfactuals in attributes that are comparable in naturalness and are more proximal to their original instances. This leads to a higher number of valid counterfactuals and a lower number of invalid counterfactuals compared to the baselines.
Arjun Dahal, Yu Lei, Raghu N. Kacker +1
May 29, 2026cs.CL

Semantic Triplet Restoration: A Novel Protocol for Hierarchical Table Understanding in Large Language Models

Table question answering requires models to recover semantic relations encoded implicitly by two-dimensional layout, merged cells, and hierarchical headers. Current pipelines typically use HTML or Markdown as intermediate table representations, but these layout-oriented serializations introduce markup overhead and require large language models to infer header-cell alignments from row and column spans. We propose Semantic Triplet Restoration (STR), a protocol that rewrites each cell as an atomic fact <item path, feature path, value>, where the item path specifies the row-wise entity, the feature path specifies the hierarchical attribute, and the value contains the cell content. We also present TripletQL, a lightweight query-aware router that uses STR to select an appropriate rendering or filtered subset of triplets for each question. Across four Chinese and English table-QA benchmarks, STR matches or improves upon HTML-based baselines while reducing input tokens. The relative benefit grows for smaller language models and longer table contexts, suggesting that explicit semantic representations are especially useful under constrained inference budgets. Code and data are available at https://github.com/Phoenix-ni/STR.git .
Yibin Zhao, Fangxin Shang, Dingrui Yang +1
May 29, 2026cs.LG

Algorithmic Recourse of In-Context Learning for Tabular Data

As predictive models are increasingly deployed in high-stakes settings such as credit approval, there is a growing need for post-hoc methods that provide recourse to affected individuals. Many such models operate on tabular data, where features correspond to real-world attributes. Recently, in-context learning (ICL) has enabled large language models to perform tabular prediction by conditioning on labeled examples at inference time, without explicit training. However, algorithmic recourse for tabular decision-making under ICL remains largely unexplored. In this work, we present the first study of algorithmic recourse for tabular data under ICL. We carry out a theoretical analysis, showing that recourse remains well-defined and bounded, and we characterize how recourse converges toward classical solutions as the context size increases. In practice, we propose a novel zeroth-order recourse framework, Adaptive Subspace Recourse for In-Context Learning (ASR-ICL), that efficiently generates actionable and sparse recourse for black-box ICL models. The proposed framework naturally extends to multi-class tabular tasks. Experiments across multiple real-world datasets and models demonstrate that ASR-ICL achieves recourse quality comparable to existing methods with fewer queries and empirically confirm the predicted convergence behavior, supporting our theoretical analysis.
Wenshuo Dong, Jiaming Zhang, Shaopeng Fu +3
May 29, 2026cs.LG

Density-Guided Robust Counterfactual Explanations on Tabular Data under Model Multiplicity

Counterfactual explanations (CEs) are essential for actionable recourse, yet their reliability is often compromised in low-density regions, where classifiers exhibit high variance. Unlike existing methods that rely on expensive ensemble intersections to define stability, we propose \textit{DensityFlow}, a generative framework that constructs robust CEs by adhering to the high-confidence data manifold. Specifically, we model the counterfactual generation as continuous-time dynamics parameterized by Neural ODE, guided by a differentiable density score to actively avoid uncertain, low-density areas. This density score is learned via Noise Contrastive Estimation, effectively leveraging a (K+1)(K{+}1)-way discriminator to estimate density ratios. For black-box settings, we introduce a local proxy distillation mechanism that aligns a lightweight surrogate with the target model strictly within the trajectory of CE generation, enabling efficient gradient-based optimization with minimal queries. Experiments demonstrate that \textit{DensityFlow} achieves superior validity under model multiplicity while significantly reducing query costs compared to ensemble-based baselines. Our implementation is available at https://github.com/G-AILab/DensityFlow.
Jun Tan, Qing Guo, Zicheng Xu +3