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Unlocking the spatial intelligence of multimodal large language model (MLLMs) is crucial for understanding and interacting with the 3D world. Prevailing approaches typically inject spatial priors via external tools, which impose significant inference overhead, or rely on latent feature distillation, which remains uninterpretable and lacks fine-grained geometric constraints. To address these issues, we propose SpatialSV, a framework designed to internalize robust 3D spatial awareness within MLLMs while simultaneously offering inherent interpretability. Deviating from passive feature imitation, SpatialSV employs task-oriented visual supervision, compelling the model to actively lift its 2D visual features into explicit 3D representations, including depth maps, camera poses, and point clouds. Crucially, this 2D-to-3D lifting process provides a transparent window into the model's representations: the resulting 3D reconstructions serve as an intuitive proxy for visualizing and diagnosing the quality of the model's intrinsic spatial knowledge. Extensive experiments across multiple models and benchmarks demonstrate the effectiveness of SpatialSV in enhancing and interpreting MLLMs' spatial intelligence. Furthermore, the framework exhibits strong generalization in semi-supervised settings, validating its potential to leverage unlabeled visual data for scalable, interpretable spatial representation learning.

Multimodal deception detection is critical for identifying fraudulent intentions, yet existing approaches predominantly rely on end to end black--box paradigms. These methods suffer from a severe lack of interpretability failing to provide transparent reasoning trajectories and struggling to explicitly capture the subtle, cross modal inconsistencies inherent in deceptive behaviors. To transcend these limitations, we propose ThinkDeception, a novel and interpretable multimodal deception detection framework. As a pioneering effort, it introduces Multimodal Large Language Models (MLLMs) into this domain, transforming deception detection from a traditional binary classification task into an explicit cognitive reasoning process. Facilitated by the first meticulously annotated step--by--step multimodal Chain of Thought (CoT) dataset, we develop a foundational model, ThinkDeception Base, empirically validating the critical role of modal inconsistency in decoding deception. Building upon this foundation, our core innovation lies in proposing Visual-Audio Consistency Group Relative Policy Optimization(VAC--GRPO) equipped with a progressive training strategy. Distinct from standard GRPO, we stratify the training data into four progressive difficulty tiers, guiding the model through a psychologically grounded easy--to--hard cognitive transition. By innovatively coupling this dynamic curriculum scheduler with a multi dimensional, process aware reward mechanism and a reflective learning paradigm, we significantly elevate the model's overall reasoning quality. Extensive experiments on mainstream benchmarks demonstrate that ThinkDeception establishes a new SOTA, significantly outperforming existing methods in both detection accuracy and rationale quality. Ultimately, this work successfully drives the field of deception detection toward interpretable, multimodal cognitive reasoning.

Large language models have achieved impressive performance on reasoning tasks spanning mathematics, science, programming, and commonsense inference. Despite these advances, their reasoning processes remain largely latent, making them difficult to interpret, verify, replay, debug, and transfer across domains. Existing approaches such as chain-of-thought, tree-of-thoughts, graph-of-thoughts, and tool-augmented reasoning expose intermediate reasoning artifacts but typically lack explicit execution semantics, formal state representations, and verifiable reasoning structures. We introduce Theorem-Grounded Execution Ontologies (TGEO), a framework that models reasoning as an executable state-transition process rather than a sequence of generated tokens. Given an input problem, TGEO identifies relevant theorem families, binds the problem to a domain ontology, discovers semantic objects, instantiates states and operators, constructs predicates and contracts, and synthesizes an executable reasoning graph. The resulting graph provides an interpretable, replayable, and auditable representation of reasoning in which every state transition, operator application, and validation step is explicitly represented. TGEO integrates five architectural components: (1) theorem-grounded reasoning priors, (2) executable ontologies, (3) operator-mediated state transitions, (4) predicate and contract-based execution validation, and (5) architectural auditing and failure localization. We evaluate TGEO on theorem-intensive reasoning tasks derived from mathematical benchmark domains and a curated Golden Execution Suite. Our findings demonstrate the value of executable reasoning representations for interpretable, verifiable, and reproducible AI reasoning systems.

Alzheimer's Disease (AD) is a complex neurodegenerative disorder that continues to impact millions of people worldwide. Predicting AD conversion during the prodromal stage remains critical for disease understanding and patient care. As such, survival models are widely used for AD risk prediction, yet they are typically static predictors with limited interpretability and no capacity for natural language reasoning. In this work, we propose iLENS, an interpretable large language model (LLM) guided framework based on mixture-of-experts (MoE) for survival prediction in AD conversion. Our approach uses LLM to synthesize structured neuroimaging measurements and unstructured information to guide expert routing. Our framework demonstrates competitive predictive performance and capability in patient subtyping. Furthermore, our framework provides transparent, biologically grounded rationales for its routing decisions, bridging the gap between high-performance survival analysis and interpretable clinical decision support.

Block Attention Residuals (Block AttnRes) by replace fixed additive residuals with a learned softmax over earlier depth-source representations, surfacing cross-layer routing as an inspectable tensor in the forward pass. This is a tempting interpretability target: information flow normally inferred indirectly is now directly observable. We ask whether such exposure suffices for mechanistic interpretation. We probe two same-scale ($0.6$B) Block AttnRes checkpoints under identical routing-ablation interventions: a vanilla Qwen3 inference-wrapped through a deterministic recency-bias schedule that the codebase admits as a routing-equivalent loading path, and a Block AttnRes Qwen3 trained from scratch with routing as part of optimisation. The wrapped baseline's routing weights are content-independent and reproduce the schedule's analytic prediction. The trained AttnRes checkpoint instead exhibits three localised routing motifs: an embedding-source pathway through early-layer MLP, a current-state pathway through early-layer attention and MLP, and an older-history pathway through late-layer attention. Beyond this stratification, we find a sharp dissociation between average routing mass and causal importance: in both sublayers, the largest mass slice is not the largest causal contribution, and one source family carries appreciable mass with no detectable causal role under intervention. Architectural exposure of routing is therefore necessary but not sufficient for mechanistic interpretation: structured depth routing emerges only when routing has been part of training, and even then, descriptive routing summaries should be treated as candidate hypotheses to be tested by causal interventions, not as evidence of mechanism in their own right.

Recovering cosmological information beyond the power spectrum is a central goal for upcoming cosmological surveys, since late-time non-Gaussian signal in the matter density cannot be accessed through two-point statistics alone. Marked statistics fold part of this information back into the two-point level by reweighting the field with non-linear functions. We propose a neural marking scheme to generalize this process through a set of interpretable, physically motivated transformations that directly allow to interpret the gain in cosmological information at the morphological level. We employ a contrastive learning objective to align learnable marked summaries with the underlying cosmological parameters. At $k_{\max}=0.2\,h\mathrm{Mpc}^{-1}$, our neural mark tightens the marginalized constraint on $σ_8$ by $2.9\times$ and on $Ω_m$ by $1.8\times$ compared to classical marks, breaking the $Ω_m-σ_8$ degeneracy at the Fisher information level. It further reduces the parameter MSE across our cosmological parameter prior by $1.45\times$ over the best classical mark. The learned latent geometry aligns with the $Ω_m$ and $σ_8$ directions in parameter space, indicating that the contrastive objective recovers the dominant axes of cosmological information. Our approach opens the door to more powerful, interpretable summary statistics for cosmological inference.

Background. Atrial fibrillation (AF) is the most prevalent cardiac arrhythmia and a major determinant of prognosis. Established AF risk scores rely on factors (older age, hypertension) nearly ubiquitous among patients with cardiovascular disease (CVD), offering limited stratification in this high-risk group. Most target long-term (5-10 year) rather than medium-term prediction. We developed interpretable ML models predicting AF risk over a 24-month and entire follow-up horizon in CVD patients using routinely collected hospital data. Methods. Single-center retrospective study of electronic health records from the National Research Cardiology Center (Russia) for patients aged >=18 with CVD but without pre-existing AF, hospitalized more than once between January 2012 and May 2019. A custom NLP pipeline transformed unstructured discharge reports into 73 structured features, combining a rule-based parser with transformer-based NER. Using LightAutoML we built a full model (73 features), a simple model (reduced subset), and a linear model for a bedside risk score. Performance was assessed by ROC AUC, compared with CHARGE-AF, C2HEST, MHS, and HAVOC, and interpreted via SHAP. Results. Of 80,576 records from 45,000 patients, 17,562 met inclusion criteria; 1,438 (8.19%) developed AF. The full model reached ROC AUC 0.735 (24-month) and 0.696 (entire follow-up); the simple model was nearly identical (0.725, 0.696). All non-linear models outperformed the four clinical risk scores (ROC AUC 0.53-0.64). The simple model uses 13 features and is named Pre-AF 13. SHAP identified age and left atrial volume as dominant predictors. A linear risk score (Pre-AF 9) stratified observed 24-month AF incidence from ~7% to 36%. Conclusion. Interpretable ML models built from routinely collected EHR data identify high-AF-risk CVD patients, outperforming established clinical risk scores.

DNA cis-regulatory elements (CREs) such as enhancers control gene expression levels. Accurately predicting regulatory activity from DNA sequences is valuable but challenging, as it requires understanding complex biological regulatory processes. Existing methods typically regress activity scores from sequences in a black-box manner, limiting both interpretability and regression performance. Meanwhile, large language models (LLMs) benefit from explicit reasoning processes, yet directly applying LLMs to raw DNA sequences performs poorly. In this paper, we bridge this gap by introducing R3LM, a framework that teaches LLMs reasoning-informed regression on regulatory DNA through structured biological knowledge. Specifically, we design a biologically grounded data format that structures DNA's regulatory information for improved LLM understanding, and construct CRE-ReasonBench, the first dataset that associates DNA sequences and activity scores with mechanistic reasoning traces. Through two-stage training that first teaches LLMs reasoning over structured biological information then performs regression, R3LM achieves state-of-the-art performance on enhancer prediction across three cell types, outperforming both LLMs with raw sequence input and specialized DNA models while providing interpretable mechanistic explanations. We expect R3LM as an interpretable reward model that can effectively assist biologists in CRE design. Code is available at https://github.com/DuanYi516/R3LM.

Interpretable brain-computer interface classifiers that generalize across subjects without calibration remain an open challenge. We test whether prototype-based cross-attention can provide competitive, interpretable event-related potential (ERP) classification under deployment-compatible conditions. We propose ERP-XTTN, a cross-attention architecture that routes input EEG patches to fixed difference-wave prototypes via query-key-only cross-attention with no value projection, so classification depends entirely on attention routing and attention faithfulness is structural rather than post-hoc. Prototypes are derived automatically from extrema in the training-fold difference wave. We evaluate across three public sources (BNCI Horizon 2020, HRI Cursor, and ERP CORE) spanning eight ERP components (ERN, LRP, ErrP, N170, P300, N2pc, MMN, N400), using leave-one-subject-out (LOSO) evaluation with causal filtering at two channel counts (3-channel and full montage), against EEGNet and xDAWN with Riemannian geometry (xDAWN+RG). The mean gap between the best baseline and ERP-XTTN was .018 AUROC at 3 channels and .034 at full montage, arising from two largely distinct sources: a temporal-flexibility cost relative to EEGNet and a spatial-exploitation cost relative to xDAWN+RG, the latter driven by signal-to-noise ratio at full montage. Beyond accuracy, the transparent routing reveals cross-subject signal structure that black-box models cannot: false positives resembled true positives more than true negatives did, indicating that classification errors are neurophysiologically explicable. ERP-XTTN generalizes across diverse ERPs under causal, calibration-free conditions with a small interpretability cost at minimal montages. To our knowledge, this is the first epoch-level LOSO benchmark on ERP CORE.

Deep learning has revolutionized medical image analysis, delivering exceptional diagnostic accuracy across diverse applications. Yet, the lack of interpretability in its decision-making hinders clinical adoption, particularly in high-stakes medical contexts where transparency is paramount for trustworthiness. For example, in Placenta Accreta Spectrum (PAS), subtle cues in ultrasound imaging challenge reliable diagnosis, rendering black-box models untrustworthy for accurate scoring. To address this, Concept Bottleneck Models (CBMs) offer a promising avenue by embedding clinically meaningful intermediate concepts into the diagnosis pipeline, enabling clinicians to scrutinize and refine model outputs. However, conventional CBMs falter in capturing complex inter-concept dependencies and demand costly, expert-driven concept annotations, limiting their scalability. This study introduces a novel semi-supervised CBM framework designed for medical imaging, which leverages dual-level hypergraph learning to model high-order concept dependencies and generate domain-adaptive pseudo-labels. Our approach achieves superior interpretability and performance by integrating a concept-level hypergraph for enhanced reasoning and an image-level hypergraph for robust pseudo-label generation. Experiments on a newly annotated PAS ultrasound dataset and a breast ultrasound public dataset demonstrate the effectiveness of the proposed concept label-efficient interpretable framework. Its universality is further validated on the dermoscopic image dataset SkinCon. The code is available at https://github.com/scott-yjyang/HyperCBM.

Ensuring factuality and interpretability in RAG remains an open and urgent problem. We introduce Contrastive Evidence Rationale Attention (CERA), the first retrieval framework to employ subjectivity-based hard negative selection and inject an evidential inductive bias into contrastive learning through an auxiliary attention alignment loss. CERA fine-tunes a dense retriever using two training objectives: triplet-based contrastive learning and interpretable attention alignment, which supervises CLS-to-token attention using a part-of-speech-weighted masking distribution over human-annotated factual rationales as evidence signals. Experiments on a large corpus of clinical trial reports demonstrate that the subjectivity-based hard negative selection substantially improves retrieval effectiveness compared to both Contriever and hard negative selection baselines. Furthermore, rationale alignment improves faithfulness while maintaining competitive retrieval performance, supporting the hypothesis that attention can serve as a more faithful explanation of model behavior when guided by human rationales. Moving beyond topical similarity, CERA enables the retriever to identify the specific tokens that constitute supporting evidence, promoting more interpretable evidence selection in RAG systems.

We demonstrate that sparse autoencoders can extract interpretable features from Claude 3 Sonnet, a production-scale language model, addressing the open question of whether dictionary learning methods scale beyond small transformers. We trained sparse autoencoders with up to 34 million features on the model's middle layer residual stream, using scaling laws to guide hyperparameter selection. The resulting features are multilingual and multimodal (generalizing to images despite text-only training), respond to both concrete instances and abstract discussions of concepts, and can be used to steer model behavior in ways consistent with their interpretations. We find features corresponding to famous entities and locations, as well as more abstract concepts like sarcasm or errors in code. We also identify features relevant to ways in which language models might cause harm--including features representing deception, power-seeking, sycophancy, and bias--and show that these causally influence model outputs when manipulated. Additionally, we conduct analyses of feature interpretability, geometry, and computational function. However, significant limitations remain: our suite of features is incomplete, and we lack rigorous methods for evaluating whether our features faithfully capture model computations.

The study of representations is widespread across fields, including neuroscience, psychology, and artificial intelligence. While representations are often studied and compared through similarities between stimuli, current methods provide only limited access to the dimensions that shape these representations and are often limited in interpretability. To overcome these challenges, here we introduce Similarity-Based Representation Factorization (SRF), a general computational method for recovering low-dimensional, non-negative, interpretable embeddings from similarity matrices derived from measured data. Across simulations and many neural, behavioral, and computational datasets, SRF recovers interpretable dimensions from diverse forms of representational data, even for very sparsely sampled, incomplete data. The dimensions derived from these datasets match those obtained by task-specific models, predict independent behavioral properties, improve exploratory analysis, and offer higher power for confirmatory hypothesis testing than comparing similarity matrices. Together, these results establish SRF as a general-purpose method with broad applications for uncovering, understanding, and using the dimensions underlying representations.

Classical archetypal analysis is appealing for its interpretability, but its linear geometry can limit performance on data with strongly non-linear structure; at the same time, existing neural extensions improve flexibility while often weakening the geometric meaning of archetypes and interpolations. In this work, we develop a Riemannian version of archetypal analysis based on data-driven pullback geometry for real-valued data, with the goal of combining the interpretability of classical archetypal analysis with the expressive power of modern non-linear models. We introduce a class of deformed star distributions together with associated pullback Riemannian geometry to provide a statistical interpretation of the resulting manifold mappings, define the Riemannian archetypal mapping (RAM) as a projection onto the manifold of geodesically convex combinations of archetypes, and propose a practical optimization scheme based on convex relaxation followed by non-convex refinement. We further propose a learning scheme that yields reasonable, albeit generally suboptimal, deformed star distributions from data. Experiments on synthetic examples and MNIST show that the resulting framework produces meaningful geodesics, useful denoising projections, and geometry-aware classifications, while also clarifying where current optimization limitations remain.

While large language models provide strong compositional reasoning, existing reasoning segmentation pipelines fail to transparently connect this reasoning to visual perception. Current methods, such as latent query alignment, are end-to-end yet opaque "black boxes". Conversely, textual localization readout is merely readable, not truly interpretable, often functioning as an unconstrained post-hoc step. To bridge this interpretability gap, we propose SegCompass, an end-to-end model that leverages a Sparse Autoencoder (SAE) to forge an explicit, interpretable, and differentiable alignment pathway. Given an image-instruction pair, SegCompass first generates a chain-of-thought (CoT) trace. The core of our method is an SAE that maps both the CoT and visual tokens into a shared, high-dimensional sparse concept space. A query codebook selects salient concepts from this space, which are then spatially grounded by a slot mapper into a multi-slot heatmap that guides the final mask decoder. The entire model is trained jointly, unifying reinforcement learning for the reasoning path with standard segmentation supervision. This SAE-driven interface provides a "white-box" connection that is significantly more traceable than latent queries and more coherent than textual readouts. Extensive experiments on five challenging benchmarks demonstrate that SegCompass matches or surpasses state-of-the-art performance. Crucially, our visual and quantitative analyses show a strong correlation between the quality of the learned sparse concepts and final mask accuracy, confirming that SegCompass achieves superior results through its enhanced and inspectable alignment. Code is available at https://github.com/ZhenyuLU-Heliodore/SegCompass.

Interpretable text representations should expose coordinates that are not only predictive, but also meaningful enough for independent auditors to apply. Existing discriminative representations often use anonymous embedding directions, while concept-bottleneck and LLM-assisted methods attach natural-language names to features without ensuring that those definitions are reproducible or distinct from the target label. We propose an operational criterion for interpretable discriminative text representations: each coordinate should satisfy conceptual clarity, measured by chance-adjusted agreement between independent annotators applying the feature definition, and label disentanglement, meaning the feature should not merely paraphrase the prediction target. We instantiate this criterion in LLM-assisted Feature Discovery (LFD), an iterative method that proposes lexical and semantic features from contrastive outcome-opposed text pairs, screens candidates using cross-LLM Cohen's $κ$, and selects features by residual held-out predictive gain. A stylized analysis connects the $κ$ screen to a per-feature annotation-noise bound, formalizing agreement as a reliability check. Across ten text-classification tasks spanning seven corpora, LFD matches the predictive performance of a strong text bottleneck baseline while producing substantially clearer and less label-entangled features. Human audits with 232 raters show that LFD features achieve higher human--human and human--LLM agreement than baseline concepts, and raters consistently judge them as less label-leaking. These results suggest that agreement-tested, label-disentangled coordinates provide a practical auditability standard for interpretable text classification.

We introduce an empowered transposed Fully Connected Weighted (t-FCW) graph representation to embed point clouds into a metric space. While original t-FCW has shown promising results for point cloud classification, the reasons behind its effectiveness and its broader applicability remained unclear. In this work, we analyze the properties that make the empowered and original t-FCW effective and design a network that uses the empowered t-FCW exclusively as feature extractors. From an interpretability perspective, we build memory banks for classification, part segmentation, and semantic segmentation using the empowered t-FCW. Our analysis reveals that the empowered t-FCW inherits robustness from surface descriptors, provides interpretability through dimension-wise relations. These properties enable a highly efficient and interpretable network, which processes the ModelNet40 classification problem in approximately 7 seconds on an NVIDIA RTX A5000 GPU. Importantly, empowered t-FCW can function both as a lightweight standalone baseline and as a complementary plug-in to existing deep models.

Disease screening is critical for early detection and timely intervention in clinical practice. However, most current screening models for medical images suffer from limited interpretability and suboptimal performance. They often lack effective mechanisms to reference historical cases or provide transparent reasoning pathways. To address these challenges, we introduce EviScreen, an evidential reasoning framework for disease screening that leverages region-level evidence from historical cases. The proposed EviScreen offers retrospection interpretability through regional evidence retrieved from dual knowledge banks. Using this evidential mechanism, the subsequent evidence-aware reasoning module makes predictions using both the current case and evidence from historical cases, thereby enhancing disease screening performance. Furthermore, rather than relying on post-hoc saliency maps, EviScreen enhances localization interpretability by leveraging abnormality maps derived from contrastive retrieval. Our method achieves superior performance on our carefully established benchmarks for real-world disease screening, yielding notably higher specificity at clinical-level recall. Code is publicly available at https://github.com/DopamineLcy/EviScreen.

Predictive maintenance in complex systems is often complicated by the heterogeneity and redundancy of monitored variables,which can obscure fault-relevant information and reduce model interpretability. This work proposes a semantic feature segmentation framework that decomposes the monitored feature space into a canonical component,expected to retain the dominant predictive information, and a residual component containing structurally peripheral signals. The segmentation is defined through domain informed criteria and sets up monitoring variables into functional groups reflecting operational mechanisms such as throughput,latency,pressure,network activity,and structural state. To evaluate the effectiveness of this decomposition, we adopt a predictive perspective in which expected predictive risk is used as an operational proxy for task-relevant information. Experimental results obtained through time-aware cross-validation show that the canonical space consistently achieves lower predictive risk than the residual space across multiple temporal configurations, indicating that the semantic segmentation concentrates the most relevant information for fault anticipation. In addition, the canonical segments exhibit significantly stronger intra-segment coherence than inter-segment dependence, and this structural organization remains stable after redundancy reduction. When compared with the full feature space and with a Principal Component Analysis (PCA) representation, the canonical space carries out comparable predictive performance and furthermore preserves the semantic meaning of the original variables. These findings suggest that semantic feature segmentation provides an interpretable and information-preserving decomposition of monitoring signals, enabling competitive predictive performance without sacrificing the operational interpretability required in predictive maintenance applications.

Deep neural networks have achieved strong performance in genomic sequence classification; however, relating their predictions to biologically meaningful sequence patterns remains challenging. In this work, we present AttnGen, an attention-guided training framework that embeds interpretability directly into the optimization process. AttnGen computes nucleotide-level importance scores using an attention mechanism and progressively suppresses low-contribution positions during training. This encourages the model to focus its predictions on a compact set of informative regions while reducing reliance on noisy sequence elements. We evaluate AttnGen on the standardized demo_human_or_worm benchmark, a binary classification task over 200-nucleotide sequences. With moderate masking, AttnGen achieves a validation accuracy of 96.73%, outperforming a conventional CNN baseline with 95.83% accuracy, while also exhibiting faster convergence and improved training stability. To assess whether the learned importance scores reflect functionally relevant signal, we conduct perturbation-based analysis by removing high-saliency nucleotides. This causes accuracy to drop from 96.9% to near chance level on a 3,000-sequence evaluation set, indicating that the model relies on a relatively small subset of informative positions. Our analysis shows that masking 10--20% of positions provides the most favorable trade-off between predictive performance and interpretability. These results suggest that attention-guided masking not only improves classification performance but also reshapes how models distribute importance across sequence positions. Although this study focuses on short genomic sequences, the proposed approach may extend to more complex interpretable sequence modeling settings.

We present Supervised Deep Multimodal Matrix Factorization (SD3MF), an interpretable framework for integrative brain network analysis that generalizes Symmetric Nonnegative Matrix Tri-Factorization (SNMTF) from unsupervised single-graph clustering to supervised prediction over populations of multimodal graphs. SD3MF learns deep hierarchical factorizations for each modality together with a shared latent representation that aligns subjects across views. An encoder-decoder formulation jointly optimizes graph reconstruction and supervised prediction, while adaptive weights enable data-driven multimodal fusion. By representing each subject through community-level interaction matrices, the model yields interpretable and discriminative features. Experiments on multimodal connectome datasets show that SD3MF consistently outperforms strong deep learning baselines such as CNNs and GNNs, while enabling biologically interpretable insights. Code for reproducibility is available at: https://github.com/amjadseyedi/SD3MF.

Vision-Language Models (VLMs) are increasingly used in safety-critical applications because of their broad reasoning capabilities and ability to generalize with minimal task-specific engineering. Despite these advantages, they can exhibit catastrophic failures in specific real-world situations, constituting failure modes. We introduce REVELIO, a framework for systematically uncovering interpretable failure modes in VLMs. We define a failure mode as a composition of interpretable, domain-relevant concepts-such as pedestrian proximity or adverse weather conditions-under which a target VLM consistently behaves incorrectly. Identifying such failures requires searching over an exponentially large discrete combinatorial space. To address this challenge, REVELIO combines two search procedures: a diversity-aware beam search that efficiently maps the failure landscape, and a Gaussian-process Thompson Sampling strategy that enables broader exploration of complex failure modes. We apply REVELIO to autonomous driving and indoor robotics domains, uncovering previously unreported vulnerabilities in state-of-the-art VLMs. In driving environments, the models often demonstrate weak spatial grounding and fail to account for major obstructions, leading to recommendations that would result in simulated crashes. In indoor robotics tasks, VLMs either miss safety hazards or behave excessively conservatively, producing false alarms and reducing operational efficiency. By identifying structured and interpretable failure modes, REVELIO offers actionable insights that can support targeted VLM safety improvements.

In time-series domains where both predictive performance and interpretability are essential, deep neural networks achieve strong results but provide limited insight into how their predictions are made. Projection-based prototype networks address this limitation by grounding predictions in similarity to representative training examples, enabling case-based explanations and global prototype inspection. However, existing approaches rely on label supervision, tying prototypes to a specific task and requiring large labeled datasets. We introduce ProtoSSL, a novel framework for learning interpretable, projection-based prototypes from unlabeled time-series data and adapting them to downstream tasks. Our key idea is to separate motif discovery from label alignment. ProtoSSL first learns a reusable prototype bank using a self-supervised objective applied directly to prototype activations, and then aligns these prototypes to downstream tasks through an efficient assignment procedure. Across six electrocardiography (ECG) datasets, ProtoSSL improves label efficiency, outperforming supervised prototype baselines in low-data regimes with as few as 256 labeled examples; with fine-tuning, ProtoSSL outperforms supervised prototype baselines at full dataset scale. In a human evaluation study, ProtoSSL produces prototypes and prototype-based explanations that are judged more favorably than those learned with direct label supervision. We further show that the framework extends to audio classification. Thus, ProtoSSL enables both learning generalizable prototypes from unlabeled data before the downstream label space is known, and subsequent assignment of interpretable, projection-grounded prototypes to new time-series tasks.

Optical coherence tomography (OCT), a commonly used retinal imaging modality, plays a central role in retinal disease diagnosis by providing high-resolution visualization of retinal layers. While deep learning (DL) has achieved expert-level accuracy in OCT-based retinal disease detection, its "black box" nature poses challenges for clinical adoption, where explainability is essential for clinical trust and regulatory approval. Existing post-hoc explainable AI (XAI) methods often struggle to delineate fine-grained lesion structures, respect anatomical boundaries, or suppress noise, limiting the trustworthiness of their explanations. To bridge these gaps, we propose a Structure-Aware Interpretable Learning (SAIL) framework that integrates retinal anatomical priors at the representation level and couples them with semantic features via a fusion design. Without modifying standard post-hoc explainability methods, this representation yields sharper and more anatomically aligned attribution maps. Comprehensive experiments on diverse OCT datasets demonstrate that our structure-aware method consistently enhances interpretability, producing clinically meaningful and anatomy-aware explanations. Ablation studies further show that strong interpretability requires both structural priors and semantic features, and that properly fusing the two is critical to achieve the best explanation quality. Together, these results highlight structure-aware representations as a key step toward reliable explainability in OCT.

EEG microstate analysis segments continuous brain electrical activity into brief, quasi-stable topographic configurations that reflect discrete functional brain states. Conventional approaches such as Modified K-Means operate directly in electrode space with hard assignment, offering no learned latent representation, no generative decoder, and no mechanism to decode latent configurations into verifiable scalp topographies, limiting both model transparency and interpretability. To address this, we present a Convolutional Variational Deep Embedding (Conv-VaDE) model that jointly learns topographic reconstruction and probabilistic soft clustering in a shared latent space. Conv-VaDE enables generative decoding of cluster prototypes into verifiable scalp topographies, replacing opaque hard partitioning with probabilistic soft assignment. A polarity invariance scheme and a four-dimensional grid search over cluster count (K from 3 to 20), latent dimensionality, network depth, and channel width are conducted to systematically reveal how each architectural design choice shapes the quality, stability, and interpretability of learned EEG microstate representations. The model is evaluated on the LEMON resting-state eyes-closed EEG dataset with ten participants using topographic template formation, clustering stability, and global explained variance (GEV). The architecture search reveals that depth L = 4 appears consistently across all 18 best-performing configurations, yielding a best-case GEV of 0.730 and a silhouette of 0.229 at K = 4 across the model sweeps, where moderately deep networks with compact channel widths and small latent dimensionality dominate across the full K range. These results establish that principled architecture search, rather than model scale, is the key to interpretable and stable EEG microstate discovery via variational deep embedding.

The growing reliance of machine learning models in high-stakes, highly regulated domains such as finance and insurance has created a growing tension between predictive performance, interpretability, and regulatory fairness requirements. In these settings, models are expected not only to deliver reliable predictions but also to provide transparent decision rationales and comply with strict fairness requirements. Attention-based transformers offer powerful mechanisms for modeling complex data relationships as demonstrated in various language tasks, yet their attention mechanisms alone do not ensure counterfactually fair predictions, even when combined with fairness-aware techniques. To address these limitations, we propose the Feature Correlation Transformer (FCorrTransformer), an attention-light architecture tailored for tabular data. In this design, the attention matrix admits a direct statistical interpretation as pairwise feature dependencies, enhancing both interpretability and efficiency. Leveraging this structure, we introduce Counterfactual Attention Regularization (CAR), a framework that enforces group-invariant fair representations of sensitive features at the attention level, promoting counterfactually fair predictions without relying on explicit causal assumptions. Empirical evaluations on imbalanced classification and regression benchmarks demonstrate that FCorrTransformer combined with CAR achieves strong counterfactual fairness while maintaining competitive predictive performance and substantially reducing model complexity compared with standard transformer-based baselines. Overall, this work bridges a critical gap between fairness theory and machine learning models, offering a practical framework for responsible AI in regulatory-sensitive domains.

Bayesian finite mixture models can identify discrete risk clusters (low-risk vs. high-risk equipment), but face three critical bottlenecks: (1) insufficient degradation signals from coarse state discretization, (2) unstable cluster identification when data inherently supports fewer clusters than explored, and (3) computational infeasibility of Markov Chain Monte Carlo (MCMC) methods for production deployment (7+ hours per model). We propose a practical framework combining (1) 8-state global percentile discretization that amplifies degradation events, (2) 30-dimensional feature engineering integrating statistical trends (22 features), continuous health indicators, and text embeddings (PCA-compressed to 3 dimensions), (3) interpretable model selection rules enforcing minimum cluster share and separation alongside WAIC, and (4) Automatic Differentiation Variational Inference (ADVI) with full-rank covariance for stable, fast estimation. Applied to 280 industrial pump equipment with 104,703 inspection records, we demonstrate: (1) Random effect models (baseline) show ADVI and NUTS produce nearly identical estimates with 15$\times$ speedup, validating ADVI accuracy. (2) Finite mixture models identify optimal number of clusters with interpretability constraints. (3) NUTS exhibits severe convergence issues and label switching, while ADVI provides stable results in 84$\times$ less time. We contributed that (1) First demonstration that fine-grained state discretization (8-state) is essential for mixture model stability in survival analysis.(2) Comprehensive feature engineering strategy combining statistical, continuous, and semantic signals. (3) Practical interpretability rules preventing overfitting in automated model selection. (4) Empirical evidence that ADVI outperforms NUTS for finite mixture models in terms of convergence, stability, and computational efficiency.

The quality of diabetic retinopathy (DR) screening relies on the ability to correctly grade severity; however, many deep-learning (DL) classifiers cannot be easily interpreted in the clinical context. This study presents a methodology that combines strong discriminative models with multimodal explanations, converting retinal pixels into clinically interpretable outputs. Using the APTOS 2019 benchmark, we evaluated six representative CNN- and transformer-based backbones under a controlled protocol with stratified five-fold cross-validation. We then compared ensembling strategies (hard voting, weighted soft voting, stacking) and investigated a hybrid class-level fusion variant to exploit grade-specific advantages. For interpretability, we produced Grad-CAM++ visual attribution maps and short textual rationales using vision-language models (VLMs) conditioned on the fundus image and classifier outputs under conservative prompting constraints. Modern CNN backbones (ResNet-50 and ConvNeXt-Tiny) provided the strongest single-model baselines, with cross-validated QWK up to 0.919 and 0.914, respectively. Ensembling improved ordinal agreement, and weighted soft voting was the most consistent across folds (QWK 0.934 +/- 0.017). Hybrid class-level fusion was competitive but did not yield a statistically reliable improvement over standard fusion in paired fold comparisons (Holm-adjusted p >= 1.000). For explanation quality, Grad-CAM++ offered plausible but coarse localization, and VLM rationales were generally grade-consistent. Quantitatively, VLM variants showed a trade-off between clinical completeness and template-level semantic similarity (coverage 0.700 vs. BERTScore 0.072), while image-text alignment was comparable (CLIPScore approximately 0.34).

Timely and interpretable early warning of sepsis remains a major clinical challenge due to the complex temporal dynamics of physiological deterioration. Traditional data-driven models often provide accurate yet opaque predictions, limiting physicians' confidence and clinical applicability. To address this limitation, we propose a Large Language Model (LLM)-guided temporal simulation framework that explicitly models physiological trajectories prior to disease onset for clinically interpretable prediction. The framework consists of a spatiotemporal feature extraction module that captures dynamic dependencies among multivariate vital signs, a Medical Prompt-as-Prefix module that embeds clinical reasoning cues into LLMs, and an agent-based post-processing component that constrains predictions within physiologically plausible ranges. By first simulating the evolution of key physiological indicators and then classifying sepsis onset, our model offers transparent prediction mechanisms that align with clinical judgment. Evaluated on the MIMIC-IV and eICU databases, the proposed method achieves superior AUC scores (0.861-0.903) across 24-4-hour pre-onset prediction tasks, outperforming conventional deep learning and rule-based approaches. More importantly, it provides interpretable trajectories and risk trends that can assist clinicians in early intervention and personalized decision-making in intensive care environments.

Nonlinear machine-learning models are increasingly used to discover causal relationships in time-series data, yet the interpretation of their outputs remains poorly understood. In particular, causal scores produced by regularized neural autoregressive models are often treated as analogues of regression coefficients, leading to misleading claims of statistical significance. In this paper, we argue that causal relevance in nonlinear time-series models should be evaluated through forecast necessity rather than coefficient magnitude, and we present a practical evaluation procedure for doing so. We present an interpretable evaluation framework based on systematic edge ablation and forecast comparison, which tests whether a candidate causal relationship is required for accurate prediction. Using Neural Additive Vector Autoregression as a case study model, we apply this framework to a real-world case study of democratic development, modeled as a multivariate time series of panel data - democracy indicators across 139 countries. We show that relationships with similar causal scores can differ dramatically in their predictive necessity due to redundancy, temporal persistence, and regime-specific effects. Our results demonstrate how forecast-necessity testing supports more reliable causal reasoning in applied AI systems and provides practical guidance for interpreting nonlinear time-series models in high-stakes domains.