Electroencephalography Spatial Super-Resolution

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Latest in Electroencephalography Spatial Super-Resolution

May 5, 2026cs.CV

Can Multimodal Large Language Models Understand Pathologic Movements? A Pilot Study on Seizure Semiology

Multimodal Large Language Models (MLLMs) have demonstrated robust capabilities in recognizing everyday human activities, yet their potential for analyzing clinically significant involuntary movements in neurological disorders remains largely unexplored. This pilot study evaluates the capability of MLLMs for automated recognition of pathological movements in seizure videos. We assessed the zero-shot performance of state-of-the-art MLLMs on 20 ILAE-defined semiological features across 90 clinical seizure recordings. MLLMs outperformed fine-tuned Convolutional Neural Network (CNN) and Vision Transformer (ViT) baseline models on 13 of 18 features without task-specific training, demonstrating particular strength in recognizing salient postural and contextual features while struggling with subtle, high-frequency movements. Feature-targeted signal enhancement (facial cropping, pose estimation, audio denoising) improved performance on 10 of 20 features. Expert evaluation showed that 94.3 percent of MLLM-generated explanations for correctly predicted cases achieved at least 60 percent faithfulness scores, aligning with epileptologist reasoning. These findings demonstrate the potential of adapting general-purpose MLLMs for specialized clinical video analysis through targeted preprocessing strategies, offering a path toward interpretable, efficient diagnostic assistance. Our code is publicly available at https://github.com/LinaZhangUCLA/PathMotionMLLM.
Lina Zhang, Tonmoy Monsoor, Mehmet Efe Lorasdagi +8
May 4, 2026cs.LG

Adaptive Data Compression and Reconstruction for Memory-Bounded EEG Continual Learning

Electroencephalography (EEG) signals provide millisecond-level temporal resolution but their analysis is limited by remarkable noise and inter-subject variability, making robust personalization difficult under limited annotations. Unsupervised Individual Continual Learning (UICL) has been proposed to address this practical challenge, where a model pretrained on a labeled cohort must adapt online to unlabeled subject streams under strict memory constraints. However, existing UICL methods typically store full past samples, which undermine the continual learning goal of avoiding retraining. Observing that EEG signals exhibit well-structured morphologies to be exploited via morphology-aware selection, compression, and reconstruction, here we propose Adaptive Data Compression and Reconstruction (ADaCoRe) for UICL. This is a memory-efficient pipeline composed of saliency-driven keyframe protection, rational polyphase compression, adjoint reconstruction with verbatim overwrite on protected indices, and prototype-confidence selection for adaptive exemplar maintenance. Across three representative benchmarks, ADaCoRe consistently outperforms recent strong baselines under tight buffer regimes (eg., the performance gains are at least +2.7 and +15.3 ACC on ISRUC and FACED datasets, respectively). Ablation studies quantify compression-fidelity trade-offs and highlight the contribution of each design, while visualizations confirm the preservation of key EEG morphology during compression and reconstruction.
Chengcheng Xie
May 4, 2026cs.LG

Pretraining on Sleep Data Improves non-Sleep Biosignal Tasks

Sleep foundation models have recently demonstrated strong performance on in-domain polysomnography tasks, including sleep staging, apnea detection, and disease risk prediction. In this work, we investigate whether sleep biosignals can serve as an effective pretraining distribution for learning representations that transfer beyond sleep to adjacent domains. Following sleep foundation models, we perform sleep-only multimodal contrastive pretraining (with a leave-one-out objective) and evaluate transfer to non-sleep EEG and ECG, two well-benchmarked biosignal modalities with heterogeneous datasets and clinically meaningful downstream tasks. Across eight downstream tasks spanning multiple EEG and ECG datasets, sleep pretraining consistently improves performance relative to training from scratch. Moreover, on several tasks, we achieve performance competitive with or surpassing prior specialized state-of-the-art and foundation models.
William Lehn-Schiøler, Magnus Ruud Kjær, Phillip Hempel +7
May 2, 2026cs.LG

ECG-biometrics-bench: A Unified Framework for Reproducible Benchmarking of ECG Biometrics

Electrocardiogram (ECG) biometrics have emerged as a promising modality for continuous, liveness-aware authentication in wearable systems. However, many prior studies report overly optimistic results due to data leakage (e.g., random splits within the same session). To address this issue, we introduce ECG-biometrics-bench, a modular, reproducible benchmarking framework that standardizes preprocessing, segmentation, and evaluation across seven widely used public ECG datasets spanning clinical, ambulatory, and large-scale cohort settings. The framework supports both closed-set and open-set (i.e., subject-disjoint generalization in this work) evaluation, as well as progressively realistic protocols including cross-session and long-term temporal separation. To facilitate reproducible research in the community, the ECG-biometrics-bench repository will be made publicly accessible on GitHub upon the acceptance of this manuscript. Through a comprehensive multi-dataset analysis, we expose the Random Split Fallacy, demonstrating that intra-session evaluation protocols artificially inflate performance while masking severe degradation caused by temporal drift and unseen identities. Furthermore, by evaluating multiple architectures, including DeepECG, ResNet1D, and CNN-LSTM, we show that these failures are not model-specific but are likely inherent to current supervised feature-learning paradigms. Finally, we demonstrate that performance degradation due to temporal aging can be partially mitigated through a heavy enrollment, lightweight authentication strategy based on dynamic multi-session template fusion. These findings establish a more realistic baseline for ECG biometrics and highlight critical challenges that must be addressed for reliable real-world deployment.
Milad Parvan
May 1, 2026cs.CV

SIMON: Saliency-aware Integrative Multi-view Object-centric Neural Decoding

Recent EEG-to-image retrieval methods leverage pretrained vision encoders and foveation-inspired priors, but typically assume a fixed, center-focused view. This center bias conflicts with content-driven human attention, creating a geometric-semantic dissociation between visual features and EEG responses. We propose SIMON, a saliency-aware multi-view framework for zero-shot EEG-to-image retrieval. SIMON combines foreground segmentation and saliency prediction to select fixation centers via Saliency-Aware Sampling (SAS), then generates foveated views that emphasize informative object regions while suppressing background clutter. On THINGS-EEG, SIMON achieves state-of-the-art performance in both intra-subject and inter-subject settings, reaching an average Top-1 accuracy of 69.7% and 19.6%, respectively, consistently outperforming recent competitive baselines. Analyses across sampling granularity, EEG channel topology, and visual/brain encoder backbones further support the robustness of saliency-aware multi-view integration. Our code and models are publicly available at https://github.com/simonlink666/SIMON.
YuSheng Lin, Ji-Hwa Tsai, Chun-Shu Wei
Apr 30, 2026cs.AI

LLM as Clinical Graph Structure Refiner: Enhancing Representation Learning in EEG Seizure Diagnosis

Electroencephalogram (EEG) signals are vital for automated seizure detection, but their inherent noise makes robust representation learning challenging. Existing graph construction methods, whether correlation-based or learning-based, often generate redundant or irrelevant edges due to the noisy nature of EEG data. This significantly impairs the quality of graph representation and limits downstream task performance. Motivated by the remarkable reasoning and contextual understanding capabilities of large language models (LLMs), we explore the idea of using LLMs as graph edge refiners. Specifically, we propose a two-stage framework: we first verify that LLM-based edge refinement can effectively identify and remove redundant connections, leading to significant improvements in seizure detection accuracy and more meaningful graph structures. Building on this insight, we further develop a robust solution where the initial graph is constructed using a Transformer-based edge predictor and multilayer perceptron, assigning probability scores to potential edges and applying a threshold to determine their existence. The LLM then acts as an edge set refiner, making informed decisions based on both textual and statistical features of node pairs to validate the remaining connections. Extensive experiments on TUSZ dataset demonstrate that our LLM-refined graph learning framework not only enhances task performance but also yields cleaner and more interpretable graph representations.
Lincan Li, Zheng Chen, Yushun Dong
Apr 30, 2026cs.NE

UniBCI: Towards a Unified Pretrained Model for Invasive Brain-Computer Interfaces

Modeling invasive neural spike data is fundamental to advancing high-performance brain-computer interfaces (BCIs). However, existing approaches face critical challenges, including limited-scale heterogeneous data, cross-domain distribution shift, and the intrinsic spatiotemporal complexity of invasive neural signals. In this work, we propose UniBCI, a unified pretrained model for invasive Brain-Computer Interfaces. The model integrates three key components: (1) a context-conditioned spatio-temporal tokenization (CST) scheme that embeds neural signals together with metadata into a shared representation space; (2) a hierarchical Interval-Area Attention (IAA) mechanism that captures patterns of spike dynamics in slots via linear attention and locality dependencies via sliding-window attention; and (3) a scalable self-supervised masked signals reconstruction objective for learning generalizable neural representations from large-scale unlabeled data. We construct a pretraining corpus spanning multiple species, subjects, brain regions, and behavioral experiment paradigms. These heterogeneous recordings are standardize via our proposed unified normalization and tokenization. Comprehensive experiments demonstrate that UniBCI achieves SOTA performance across diverse downstream tasks while improving generalization. Moreover, the model achieves a strong balance between accuracy and efficiency, with fewer trainable parameters and lower inference latency. These results suggest that UniBCI provides a practical step toward general-purpose neural foundation models, enabling robust, scalable, and transferable representation learning for invasive neural data. The code for this paper is available at: https://anonymous.4open.science/r/UniBCI-C805.
Binjie Hong, Rui Xiong, Liyuan Han +1
Apr 29, 2026cs.LG

Cross-Subject Generalization for EEG Decoding: A Survey of Deep Learning Methods

Deep learning for cross-subject EEG decoding is hindered by high inter-subject variability, which introduces a severe domain shift between training and unseen test subjects. This survey presents a comprehensive review of deep learning methodologies specifically engineered to address this cross-subject generalization challenge. To ground this analysis, we formalize the cross-subject setting as a multi-source domain problem and delineate the rigorous, subject-independent evaluation protocols required for valid assessment. Central to this survey is a systematic taxonomy of the current literature into discrete methodological families, including feature alignment, adversarial learning, feature disentanglement, and contrastive learning. We conclude by examining three critical elements for advancing robust, real-world decoding: the theoretical limitations of current methodologies, the structural value of subject identity, and the emergence of EEG foundation models.
Taida Li, Yujun Yan, Fei Dou +2
Apr 29, 2026cs.LG

Interpretable EEG Microstate Discovery via Variational Deep Embedding: A Systematic Architecture Search with Multi-Quadrant Evaluation

EEG microstate analysis segments continuous brain electrical activity into brief, quasi-stable topographic configurations that reflect discrete functional brain states. Conventional approaches such as Modified K-Means operate directly in electrode space with hard assignment, offering no learned latent representation, no generative decoder, and no mechanism to decode latent configurations into verifiable scalp topographies, limiting both model transparency and interpretability. To address this, we present a Convolutional Variational Deep Embedding (Conv-VaDE) model that jointly learns topographic reconstruction and probabilistic soft clustering in a shared latent space. Conv-VaDE enables generative decoding of cluster prototypes into verifiable scalp topographies, replacing opaque hard partitioning with probabilistic soft assignment. A polarity invariance scheme and a four-dimensional grid search over cluster count (K from 3 to 20), latent dimensionality, network depth, and channel width are conducted to systematically reveal how each architectural design choice shapes the quality, stability, and interpretability of learned EEG microstate representations. The model is evaluated on the LEMON resting-state eyes-closed EEG dataset with ten participants using topographic template formation, clustering stability, and global explained variance (GEV). The architecture search reveals that depth L = 4 appears consistently across all 18 best-performing configurations, yielding a best-case GEV of 0.730 and a silhouette of 0.229 at K = 4 across the model sweeps, where moderately deep networks with compact channel widths and small latent dimensionality dominate across the full K range. These results establish that principled architecture search, rather than model scale, is the key to interpretable and stable EEG microstate discovery via variational deep embedding.
Saheed Faremi, Andrea Visentin, Luca Longo
Apr 29, 2026cs.CV

A Multimodal Pre-trained Network for Integrated EEG-Video Seizure Detection

Reliable seizure detection in mouse models is essential for preclinical epilepsy research, yet manual review of synchronized video-EEG recordings is labor-intensive and single-modality systems fail for complementary reasons: video-based methods are easily confounded by benign behaviors, whereas EEG-based methods are vulnerable to ictal motion artifacts. We present EEGVFusion, a multimodal framework that combines self-supervised EEG representation learning, spatio-temporal video encoding, optimal-transport alignment, and bidirectional cross-attention to integrate neural and behavioral evidence. We also curate an expert-annotated dataset of synchronized EEG and video recordings comprising 93 sessions from 15 mice for training and evaluation. In the random-session split, EEGVFusion achieved a Balanced Accuracy of 0.9957 with perfect event sensitivity and an Event FAR of 0.6250 FP/h, indicating strong seizure detection performance with a low false-alarm burden. In a single held-out-subject evaluation with Subject 110 reserved for testing, EEGVFusion achieved a Balanced Accuracy of 0.9718 and reduced Event FAR from 2.7250 FP/h for the EEG-only counterpart to 0.4833 FP/h while preserving perfect event sensitivity. Targeted ablations further showed that EEG pre-training and OT alignment help reduce false alarms while preserving event sensitivity.
Tong Lu, Ke Xu, Zimo Zhang +12
Apr 28, 2026cs.LG

Towards Unified Multi-task EEG Analysis with Low-Rank Adaptation

Recent self-supervised pre-training methods for electroencephalogram (EEG) have shown promising results. However, the pre-trained models typically require full fine-tuning on each downstream task individually to achieve good performance. In practical applications involving multiple tasks, utilizing a separate model for each task is not ideal regarding computational and spatial cost. In this study, we go one step further and explore the simultaneous adaptation of a pre-trained model to multiple different tasks. The EEG signals exhibit significant heterogeneity due to their collection from various subjects using diverse devices and experimental setups, resulting in potential conflicts among different tasks that impede joint optimization. To tackle this challenge, we propose MTEEG, a multi-task EEG analysis framework which incorporates task-specific low-rank adaptation (LoRA) modules to disentangle the parameter space and alleviate task conflicts. To investigate the trade-off between task specification and interaction, we propose three variants of MTEEG that integrate the LoRA modules in different ways and evaluate them on six downstream tasks, demonstrating that MTEEG can surpass state-of-the-art single-task methods on the majority of metrics. MTEEG shows the potential of multi-task EEG analysis and promotes the development of general-purpose brain-computer interfaces in the future.
Sicheng Dai, Kai Chen, Hongwang Xiao +2
Apr 27, 2026eess.SP

BandRouteNet: An Adaptive Band Routing Neural Network for EEG Artifact Removal

Electroencephalography (EEG) is highly susceptible to artifact contamination, such as electrooculographic (EOG) and electromyographic (EMG) interference, which severely degrades signal quality and hinders reliable interpretation in applications including neurological diagnosis, brain-computer interfaces (BCIs), etc. Effective EEG denoising remains challenging because different artifact sources exhibit diverse and temporally varying distributions, together with distinct spectral characteristics across frequency bands. To address these issues, we propose BandRouteNet, an adaptive frequency-aware neural network for EEG denoising that jointly exploits band-specific processing and full-band contextual modeling. The proposed model performs band-wise denoising to explicitly capture frequency-dependent artifact patterns. Within this framework, we introduce a routing mechanism that adaptively determines where and to what extent denoising should be applied across temporal locations within each frequency band. In parallel, a full-band conditioner directly processes the original noisy EEG to extract global temporal context, producing both conditional parameters for modulating the band-wise pathway and a coarse-grained signal-level refinement to supplement the final reconstruction. Extensive experiments on the EEGDenoiseNet benchmark dataset demonstrate that BandRouteNet outperforms other methods under EOG, EMG, and mixed-artifact conditions in terms of Relative Root Mean Square Error (RRMSE) and Signal-to-Noise Ratio Improvement (SNRimp_{\text{imp}}) under unified experimental settings, while remaining highly parameter-efficient with only 0.2M trainable parameters. These results highlight its strong potential for high-performance EEG artifact removal in resource-constrained applications.
Phat Lam
Apr 27, 2026cs.LG

Robust and Clinically Reliable EEG Biomarkers: A Cross Population Framework for Generalizable Parkinson's Disease Detection

Developing robust and clinically reliable EEG biomarkers requires evaluation frameworks that explicitly address cross population generalization in multi site settings such as Parkinsons disease (PD) detection. Models trained under i.i.d. assumptions often capture population specific artifacts rather than disease relevant neural structure, leading to poor generalization across clinical cohorts. EEG further amplifies this challenge due to low signal to noise ratio and heterogeneous acquisition conditions. We propose a population aware evaluation framework to assess the robustness and clinical reliability of EEG biomarkers under distribution shift. Using an n gram expansion strategy, we enumerate all cross population train test configurations across five independent cohorts, resulting in 75 directional evaluations. A nested cross validation design with integrated channel selection ensures prospective biomarker identification without population leakage. Results show that cross population transfer is asymmetric and that both accuracy and biomarker stability improve with increasing training population diversity, achieving up to 94.1% accuracy on held out cohorts. A theoretical analysis based on mixture risk optimization and hypothesis space contraction explains these trends, showing that multi population training promotes population robust representations. This work establishes a principled framework for learning robust, generalizable, and clinically reliable EEG biomarkers for multi site biomedical applications.
Nicholas R. Rasmussen, Longwei Wang, Rodrigue Rizk +5
Apr 25, 2026cs.LG

Channel Adaptation for EEG Foundation Models: A Systematic Benchmark Across Architectures, Tasks, and Training Regimes

Scaling EEG foundation models requires pooling data across heterogeneous electrode montages, a prerequisite both for larger pretraining corpora and for downstream deployment. We present the first systematic comparison of four channel adaptation methods (Conv1d projection, spherical spline interpolation (SSI), source-space decomposition, and Riemannian re-centering) across five pretrained EEG foundation models (5M--157M parameters), five downstream tasks, and two training regimes with 10--15 random seeds each. We find that rigid-montage models (BENDR, Neuro-GPT) require external adaptation, while flexible models (EEGPT, CBraMod) match or exceed it natively when fine-tuned but benefit from external methods under frozen-encoder deployment. A probe-SFT asymmetry exists: external adaptation can cause severe negative transfer during fine-tuning of flexible models. The optimal method is architecture-dependent (Conv1d for BENDR, SSI/Riemannian for Neuro-GPT, source-space decomposition for depression detection), and 5M-parameter CBraMod outperforms models up to 31×\times larger on 4/5 datasets, consistent with independent findings that compact EEG-specific architectures can match larger models.
Kuntal Kokate, Bruno Aristimunha, Dung Truong +1
Apr 24, 2026cs.NE

Structure-Guided Diffusion Model for EEG-Based Visual Cognition Reconstruction

Objective: Decoding visual information from electroencephalography (EEG) is an important problem in neuroscience and brain-computer interface (BCI) research. Existing methods are largely restricted to natural images and categorical representations, with limited capacity to capture structural features and to differentiate objective perception from subjective cognition. We propose a Structure-Guided Diffusion Model (SGDM) that incorporates explicit structural information for EEG-based visual reconstruction. Approach: SGDM is evaluated on the Kilogram abstract visual object dataset and the THINGS natural image dataset using a two-stage generative mechanism. The framework combines a structurally supervised variational autoencoder with a spatiotemporal EEG encoder aligned to a visual embedding space via contrastive learning. Structural information is integrated into a diffusion model through ControlNet to guide image generation from EEG features. Results: SGDM outperforms existing methods on both abstract and natural image datasets. Reconstructed images achieve higher fidelity in low-level visual features and semantic representations, indicating improved decoding accuracy and strong generalization across diverse visual domains. Spatiotemporal analysis of EEG signals further reveals hierarchical structural encoding patterns, consistent with the neural dynamics of visual cognition. Significance: These findings validate the effectiveness of SGDM in capturing explicit structural geometry and generating images with high fidelity to individual cognitive representations. By enabling decoding of complex visual content from EEG signals, the framework extends neural decoding beyond low-dimensional or categorical outputs. This supports BCIs with increased degrees of freedom for intention decoding and more flexible brain-to-machine communication.
Yongxiang Lian, Yueyang Cang, Pingge Hu +2
Apr 22, 2026eess.SP

Leakage-Audited Benchmarking Reveals Limited Evidence for Cross-Subject Auditory-Evoked EEG Vowel Perception Decoding

We tested whether auditory-evoked EEG supports subject-independent five-vowel perception decoding when trial identity, model identity, prediction provenance, and participant-level inference are controlled within a single benchmark. We reconstructed Study 2 event tables from OpenNeuro ds006104 version 1.0.1 and analysed the consonant-vowel pair task. One-to-one marker-stimulus pairing yielded 3,840 independent trials; control-condition selection and artifact rejection retained 1,094 epochs from 16 participants and 61 EEG channels. Thirteen unique implementations were evaluated using leave-one-subject-out testing, with participant metrics reconstructed from 36,102 trial predictions across 33 complete prediction replicas. Random Forest was numerically highest at 21.474% balanced accuracy (95% participant-bootstrap interval, 19.526-23.482%; chance, 20%), but neither its participant-level tests nor any implementation survived correction across the 13-model family. Deep-model performance was close to chance, and several architectures showed substantial seed-dependent variation and low trial-label agreement. An exploratory MDM analysis comprising 9,616 genuine refits across training cohorts of 3-15 participants showed no monotonic performance gain. Within this dataset and protocol, evidence for reliable cross-subject five-vowel decoding is limited. The benchmark provides a reproducible chain from source rows to retained epochs, predictions, participant-level metrics, multiplicity-adjusted inference, and bounded diagnostic analyses.
Xiaoyang Li, Zeyan Tao
Apr 21, 2026eess.SP

Foundation Model Guided Dual-Branch Co-Adaptation for Source-Free EEG Decoding

Source-free domain adaptation (SFDA) provides a practical solution to cross-subject EEG decoding by adapting source-pretrained models to unlabeled target domains without accessing source data. However, existing SFDA methods rely solely on the limited internal knowledge of source-pretrained models, leading to inferior cross-domain generalization and unreliable pseudo-labels. Although EEG Foundation Models (FMs) pretrained on large-scale data exhibit strong generalizability, their potential in SFDA remains largely unexplored. To this end, we propose FUSED, a Foundation-guided Source-free EEG Decoding framework that integrates a large-scale FM with a compact Specialist Model (SM) via dual-branch co-adaptation. Specifically, we introduce a Co-adaptation mechanism equipping both branches with linear and prototype views, enabling cross-branch pseudo-label generation. Additionally, we design a Consensus Filtering Mechanism that exploits the FM's inherent stability to identify high-quality samples, along with a Two-Stage Pseudo-Label Refinement scheme to suppress error accumulation through cross-branch arbitration. Finally, we calibrate the FM's decision boundaries via mutual information maximization with the SM, followed by knowledge distillation from FM to SM, forming a principled calibrate-then-distill pipeline. To our knowledge, FUSED is the first work to leverage EEG FMs within the SFDA framework for cross-subject EEG decoding. Extensive experiments across three EEG paradigms, including motor imagery, emotion recognition, and SSVEP, demonstrate consistent state-of-the-art performance, validating the effectiveness of foundation-guided synergy for robust and privacy-preserving EEG decoding.
Peiliang Gong, Han Zhang, Zhen Jiang +5
Apr 20, 2026cs.HC

EEG-Based Emergency Braking Intensity Prediction Using Blind Source Separation

Electroencephalography (EEG) signals have been promising for long-term braking intensity prediction but are prone to various artifacts that limit their reliability. Here, we propose a novel framework that models EEG signals as mixtures of independent blind sources and identifies those strongly correlated with braking action. Our method employs independent component analysis to decompose EEG into different components and combines time-frequency analysis with Pearson correlations to select braking-related components. Furthermore, we utilize hierarchical clustering to group braking-related components into two clusters, each characterized by a distinct spatial pattern. Additionally, these components exhibit trial-invariant temporal patterns and demonstrate stable and common neural signatures of the emergency braking process. Using power features from these components and historical braking data, we predict braking intensity at a 200 ms horizon. Evaluations on the open source dataset (O.D.) and human-in-the-loop simulation (H.S.) show that our method outperforms state-of-the-art approaches, achieving RMSE reductions of 8.0% (O.D.) and 23.8% (H.S.).
Zikun Zhou, Wenshuo Wang, Wenzhuo Liu +5
Apr 20, 2026cs.AI

DSAINet: An Efficient Dual-Scale Attentive Interaction Network for General EEG Decoding

In real-world applications of noninvasive electroencephalography (EEG), specialized decoders often show limited generalizability across diverse tasks under subject-independent settings. One central challenge is that task-relevant EEG signals often follow different temporal organization patterns across tasks, while many existing methods rely on task-tailored architectural designs that introduce task-specific temporal inductive biases. This mismatch makes it difficult to adapt temporal modeling across tasks without changing the model configuration. To address these challenges, we propose DSAINet, an efficient dual-scale attentive interaction network for general EEG decoding. Specifically, DSAINet constructs shared spatiotemporal token representations from raw EEG signals and models diverse temporal dynamics through parallel convolutional branches at fine and coarse scales. The resulting representations are then adaptively refined by intra-branch attention to emphasize salient scale-specific patterns and by inter-branch attention to integrate task-relevant features across scales, followed by adaptive token aggregation to yield a compact representation for prediction. Extensive experiments on five downstream EEG decoding tasks across ten public datasets show that DSAINet consistently outperforms 13 representative baselines under strict subject-independent evaluation. Notably, this performance is achieved using the same architecture hyperparameters across datasets. Moreover, DSAINet achieves a favorable accuracy-efficiency trade-off with only about 77K trainable parameters and provides interpretable neurophysiological insights. The code is publicly available at https://github.com/zy0929/DSAINet.
Zhiyuan Ma, Zeyuan Li, Zihao Qiu +6
Apr 20, 2026cs.CV

Brain-Inspired Capture: Evidence-Driven Neuromimetic Perceptual Simulation for Visual Decoding

Visual decoding of neurophysiological signals is a critical challenge for brain-computer interfaces (BCIs) and computational neuroscience. However, current approaches are often constrained by the systematic and stochastic gaps between neural and visual modalities, largely neglecting the intrinsic computational mechanisms of the Human Visual System (HVS). To address this, we propose Brain-Inspired Capture (BI-Cap), a neuromimetic perceptual simulation paradigm that aligns these modalities by emulating HVS processing. Specifically, we construct a neuromimetic pipeline comprising four biologically plausible dynamic and static transformations, coupled with Mutual Information (MI)-guided dynamic blur regulation to simulate adaptive visual processing. Furthermore, to mitigate the inherent non-stationarity of neural activity, we introduce an evidence-driven latent space representation. This formulation explicitly models uncertainty, thereby ensuring robust neural embeddings. Extensive evaluations on zero-shot brain-to-image retrieval across two public benchmarks demonstrate that BI-Cap substantially outperforms state-of-the-art methods, achieving relative gains of 9.2% and 8.0%, respectively. We have released the source code on GitHub through the link https://github.com/flysnow1024/BI-Cap.
Feixue Shao, Guangze Shi, Xueyu Liu +6
Apr 18, 2026physics.med-ph

Light-Adapted Electroretinogram and Oscillatory Potentials (LEOPs) Dataset for Autism Spectrum Disorder and Typically Developing Individuals

The LEOPs (Light-ERG-Oscillatory Potentials) dataset provides light-adapted (LA) electroretinogram (ERG) and Oscillatory Potentials (OPs) waveforms for typically developing Control, Autism Spectrum Disorder (ASD) and ASD + Attention Deficit Hyperactivity Disorder (ADHD) childhood and adolescent populations. The ERGs were recorded in the Right And Left eyes with skin electrodes using the handheld RETeval device at two sites in Australia and the United Kingdom. The LEOPs dataset includes 5309 single flash ERG and 4434 OPs waveforms as well as images selected from each participant showing the position of the skin electrode. The LEOPs dataset is constructed from recordings using a 9 step randomized flash series from 0.37-0.37 to 1.201.20Td.sTd.s, a 2 step at 113 and 446 Td.sTd.s flash strengths (2500 Control, 1730 ASD and 451 ASD + ADHD samples), as well as the 8585Td.sTd.s (Light Adapted 3 cd.s.m2cd.s.m^{-2} (LA3)) equivalent International Society of Clinical Electrophysiology of Vision (ISCEV) Standard flash with 435 Control, 176 ASD and 37 ASD + ADHD waveform samples. Code for the stimulus is provided along with participant demographics, date and time of testing, and where available diagnostic scores for the ASD and ASD + ADHD groups, alongside iris color, electrode position with image files and time domain values for the ERG and summed values for the OPs. The repository contains excel file, exported JSON files on the patient level that are more suitable for machine learning tasks, images of electrode position for each recording and the protocol files for use with the RETeval.
Paul A. Constable, Dorothy A. Thompson, Irene O. Lee +4
Apr 18, 2026stat.ML

Neighbor Embedding for High-Dimensional Sparse Poisson Data

Across many scientific fields, measurements often represent the number of times an event occurs. For example, a document can be represented by word occurrence counts, neural activity by spike counts per time window, or online communication by daily email counts. These measurements yield high-dimensional count data that often approximate a Poisson distribution, frequently with low rates that produce substantial sparsity and complicate downstream analysis. A useful approach is to embed the data into a low-dimensional space that preserves meaningful structure, commonly termed dimensionality reduction. Yet existing dimensionality reduction methods, including both linear (e.g., PCA) and nonlinear approaches (e.g., t-SNE), often assume continuous Euclidean geometry, thereby misaligning with the discrete, sparse nature of low-rate count data. Here, we propose p-SNE (Poisson Stochastic Neighbor Embedding), a nonlinear neighbor embedding method designed around the Poisson structure of count data, using KL divergence between Poisson distributions to measure pairwise dissimilarity and Hellinger distance to optimize the embedding. We test p-SNE on synthetic Poisson data and demonstrate its ability to recover meaningful structure in real-world count datasets, including weekday patterns in email communication, research area clusters in OpenReview papers, and temporal drift and stimulus gradients in neural spike recordings.
Noga Mudrik, Adam S. Charles
Apr 18, 2026cs.LG

Test-Time Adaptation for EEG Foundation Models: A Systematic Study under Real-World Distribution Shifts

Electroencephalography (EEG) foundation models have shown strong potential for learning generalizable representations from large-scale neural data, yet their clinical deployment is hindered by distribution shifts across clinical settings, devices, and populations. Test-time adaptation (TTA) offers a promising solution by enabling models to adapt to unlabeled target data during inference without access to source data, a valuable property in healthcare settings constrained by privacy regulations and limited labeled data. However, its effectiveness for EEG remains largely underexplored. In this work, we introduce NeuroAdapt-Bench, a systematic benchmark for evaluating test-time adaptation methods on EEG foundation models under realistic distribution shifts. We evaluate representative TTA approaches from other domains across multiple pretrained foundation models, diverse downstream tasks, and heterogeneous datasets spanning in-distribution, out-of-distribution, and extreme modality shifts (e.g., Ear-EEG). Our results show that standard TTA methods yield inconsistent gains and often degrade performance, with gradient-based approaches particularly prone to heavy degradation. In contrast, optimization-free methods demonstrate greater stability and more reliable improvements. These findings highlight the limitations of existing TTA techniques in EEG, provide guidance for future development, and underscore the need for domain-specific adaptation strategies.
Gabriel Jason Lee, Jathurshan Pradeepkumar, Jimeng Sun
Apr 17, 2026cs.CV

PA-TCNet: Pathology-Aware Temporal Calibration with Physiology-Guided Target Refinement for Cross-Subject Motor Imagery EEG Decoding in Stroke Patients

Stroke patient cross-subject electroencephalography (EEG) decoding of motor imagery (MI) brain-computer interface (BCI) is essential for motor rehabilitation, yet lesion-related abnormal temporal dynamics and pronounced inter-patient heterogeneity often undermine generalization. Existing adaptation methods are easily misled by pathological slow-wave activity and unstable target-domain pseudo-labels. To address this challenge, we propose PA-TCNet, a pathology-aware temporal calibration framework with physiology-guided target refinement for stroke motor imagery decoding. PA-TCNet integrates two coordinated components. The Pathology-aware Rhythmic State Mamba (PRSM) module decomposes EEG spatiotemporal features into slowly varying rhythmic context and fast transient perturbations, injecting the fused pathological context into selective state propagation to more effectively capture abnormal temporal dynamics. The Physiology-Guided Target Calibration (PGTC) module constructs source-domain sensorimotor region-of-interest templates, imposing physiological consistency constraints and dynamically refining target-domain pseudo-labels, thereby improving adaptation reliability. Leave-one-subject-out experiments on two independent stroke EEG datasets, XW-Stroke and 2019-Stroke, yielded mean accuracies of 66.56% and 72.75%, respectively, outperforming state-of-the-art baselines. These results indicate that jointly modeling pathological temporal dynamics and physiology-constrained pseudo-supervision can provide more robust cross-subject initialization for personalized post-stroke MI-BCI rehabilitation. The implemented code is available at https://github.com/wxk1224/PA-TCNet.
Xiangkai Wang, Yun Zhao, Dongyi He +5
Apr 16, 2026cs.LG

DLink: Distilling Layer-wise and Dominant Knowledge from EEG Foundation Models

EEG foundation models (EFMs) achieve strong cross-subject and cross-task generalization through large-scale pretraining and downstream fine-tuning. Through empirical analysis, we observe that (i) task-adapted EFMs provide strong decoding performance but incur substantial overhead when retained as inference backbones, making knowledge distillation a natural route for optimizing compact students; and (ii) direct distillation from a fixed teacher representation underutilizes EFM knowledge, as task-discriminative information is distributed across intermediate layers rather than concentrated in the final layer. These observations motivate DLink (Distilling Layer-wise and Dominant Knowledge), a spectrally guided distillation framework with input-conditioned layer routing for transferring EFM knowledge into compact students. DLink uses a lightweight router to aggregate teacher layers for each input, and aligns magnitude and phase spectra to mitigate compression-induced spectral distortion in learned representations. The routed teacher knowledge is internalized by a project-then-compress student; the teacher and router are used only during training. Experiments on four EEG benchmarks show that DLink improves matched compact students and remains competitive with lightweight baselines, narrowing the gap to fine-tuned EFMs while substantially reducing parameters, FLOPs, and CPU-only inference latency.
Jingyuan Wang, Zhihao Jia, Chenyu Liu +7
Apr 16, 2026cs.LG

Predicting Post-Traumatic Epilepsy from Clinical Records using Large Language Model Embeddings

Objective: Post-traumatic epilepsy (PTE) is a debilitating neurological disorder that develops after traumatic brain injury (TBI). Early prediction of PTE remains challenging due to heterogeneous clinical data, limited positive cases, and reliance on resource-intensive neuroimaging data. We investigate whether routinely collected acute clinical records alone can support early PTE prediction using language model-based approaches. Methods: Using a curated subset of the TRACK-TBI cohort, we developed an automated PTE prediction framework that implements pretrained large language models (LLMs) as fixed feature extractors to encode clinical records. Tabular features, LLM-generated embeddings, and hybrid feature representations were evaluated using gradient-boosted tree classifiers under stratified cross-validation. Results: LLM embeddings achieved performance improvements by capturing contextual clinical information compared to using tabular features alone. The best performance was achieved by a modality-aware feature fusion strategy combining tabular features and LLM embeddings, achieving an AUC-ROC of 0.892 and AUPRC of 0.798. Acute post-traumatic seizures, injury severity, neurosurgical intervention, and ICU stay are key contributors to the predictive performance. Significance: These findings demonstrate that routine acute clinical records contain information suitable for early PTE risk prediction using LLM embeddings in conjunction with gradient-boosted tree classifiers. This approach represents a promising complement to imaging-based prediction.
Wenhui Cui, Nicholas Swingle, Anand A. Joshi +2
Mar 18, 2026cs.LG

Variational Phasor Circuits for Phase-Native Brain-Computer Interface Classification

We present the Variational Phasor Circuit (VPC), a deterministic classical learning architecture on the continuous S1S^1 unit-circle manifold. Inspired by variational quantum circuits, VPC replaces dense weight matrices with trainable phase shifts, local unitary mixing, and structured interference in the ambient complex space, giving a unified method for binary and multi-class classification of spatially distributed signals. We evaluate VPC on real motor-imagery electroencephalography (EEG) from the PhysioNet Motor Movement/Imagery database (10 subjects, Common Spatial Pattern features, subject-wise cross-validation), where it attains a mean decoding accuracy of 0.600.60 -- the highest among standard brain--computer-interface baselines (linear discriminant analysis, logistic regression, RBF-SVM, and a multilayer perceptron) -- using an order of magnitude fewer parameters and the lowest cross-subject variance. We also characterize capacity honestly: with phase-only shifts and unitary mixing, VPC realizes a linear decision function in a fixed cosine/sine feature lifting, well matched to the largely separable band-power structure of EEG but unable to represent parity-type functions, a ceiling that depth does not raise. These results position unit-circle phase interference as a parameter-efficient alternative to dense neural computation for signal classification, and motivate VPC both as a standalone classifier and a front-end for hybrid phasor-quantum systems.
Dibakar Sigdel
Mar 11, 2026cs.LG

Group Resonance Network: Learnable Prototypes and Multi-Subject Resonance for EEG Emotion Recognition

Electroencephalography (EEG)-based emotion recognition remains challenging in cross-subject settings due to severe inter-subject variability. Existing methods mainly learn subject-invariant features, but often under-exploit stimulus-locked group regularities shared across subjects. To address this issue, we propose the Group Resonance Network (GRN), which integrates individual EEG dynamics with offline group resonance modeling. GRN contains three components: an individual encoder for band-wise EEG features, a set of learnable group prototypes for prototype-induced resonance, and a multi-subject resonance branch that encodes PLV/coherence-based synchrony with a small reference set. A resonance-aware fusion module combines individual and group-level representations for final classification. Experiments on SEED and DEAP under both subject-dependent and leave-one-subject-out protocols show that GRN consistently outperforms competitive baselines, while additional analyses confirm the effects of prototype learning, PLV/coherence resonance, and leakage-safe reference construction.
Renwei Meng
Feb 19, 2026stat.ME

Sparse Bayesian Modeling of EEG Channel Interactions Improves P300 Brain-Computer Interface Performance

Electroencephalography (EEG)-based P300 brain-computer interfaces (BCIs) enable communication without physical movement by detecting stimulus-evoked neural responses. Accurate and efficient decoding remains challenging due to high dimensionality, temporal dependence, and complex interactions across EEG channels. Existing approaches often treat channels independently or rely on black-box models, limiting interpretability and personalization. We propose a sparse Bayesian time-varying regression framework that explicitly models pairwise EEG channel interactions while performing temporal feature selection, where a relaxed-thresholded Gaussian process prior induces structured sparsity in both channel-specific and interaction effects, enabling interpretable identification of task-relevant channels and channel pairs. Applied to a public P300 speller dataset of 55 participants, our method achieves a 96.4% median character-level accuracy using all sequence repetitions and attains the best overall decoding performance among competing statistical and deep learning approaches. Incorporating channel interactions yields subgroup-specific gains in character-level accuracy, particularly among participants abstained from alcohol (median 7%, up to 14%). Importantly, our approach improves median BCI-Utility by more than 10% at its optimal operating point, achieving peak throughput after only six sequence repetitions. These results demonstrate that explicitly modeling structured EEG channel interactions within a principled Bayesian framework enhances accuracy and user-centric throughput, and supports personalization in P300 BCI systems.
Guoxuan Ma, Yuan Zhong, Moyan Li +2
Feb 13, 2026cs.AI

NeuroWeaver: An Autonomous Evolutionary Agent for Exploring the Programmatic Space of EEG Analysis Pipelines

Although foundation models have achieved remarkable success in general domains, applying them to electroencephalography (EEG) analysis is constrained by substantial data requirements and large parameter counts, which incur prohibitive computational costs and impede deployment in resource-constrained clinical environments. General-purpose automated machine learning frameworks are likewise ill-suited to this domain, since exploration within an unbounded programmatic space fails to incorporate essential neurophysiological priors and frequently yields neuroscientifically implausible solutions. We therefore propose NeuroWeaver, a unified autonomous evolutionary agent that generalizes across diverse EEG datasets and tasks by reformulating pipeline engineering as a discrete constrained optimization problem solved through large language model (LLM)-driven generation of executable code. A Domain-Informed Subspace Initialization confines the search to a neuroscientifically plausible manifold, while a Multi-Objective Evolutionary Optimization dynamically balances performance, novelty, and efficiency via self-reflective refinement. Across five heterogeneous benchmarks, NeuroWeaver synthesizes lightweight pipelines that outperform state-of-the-art task-specific methods on nearly all metrics and attain accuracy comparable to large-scale foundation models, even surpassing them on the HMC and Workload benchmarks with only 0.180.18M and 0.0110.011M parameters, respectively.
Guoan Wang, Shihao Yang, Feng Liu
Feb 11, 2026cs.LG

A swap-adversarial framework for improving domain generalization in electrocorticography-based Parkinson's disease classification

We propose a novel swap-adversarial framework that mitigates high inter-subject variability and the high-dimensional low-sample-size problem in electrocorticography (ECoG) data. It achieves robust domain generalization across ECoG and electroencephalography (EEG)-based brain-computer interface datasets. Our framework integrates (1) robust preprocessing, (2) inter-subject balanced channel swap (ISBCS) for cross-subject augmentation, and (3) domain-adversarial learning (DAL) to suppress subject-specific bias. The ISBCS method is a bio-inspired channel swapping strategy that exchanges only functionally corresponding channels across subjects, guided by a brain map, to mitigate inter-subject distribution differences. The DAL strategy encourages the model to learn task-relevant shared features. We validate the effectiveness of this framework through extensive experiments under cross-subject, cross-session, and cross-dataset settings. Our framework consistently outperforms all baselines across all settings, showing the most significant improvements in highly variable environments. It also achieves superior cross-dataset performance between public EEG benchmarks, demonstrating strong generalization capability not only for ECoG but also for EEG data. In addition, we introduce a new ECoG dataset, the first reproducible benchmark, which is constructed from long-term ECoG recordings of 6-hydroxydopamine-induced rat models and annotated with neural responses measured before and after electrical stimulation.
Seongwon Jin, Hanseul Choi, Sunggu Yang +2
Dec 16, 2025cs.LG

AnySleep: a channel-agnostic deep learning system for high-resolution sleep staging in multi-center cohorts

Sleep is essential for health, yet studying its dynamics requires manual sleep staging, a labor-intensive step in research and clinical care. Across centers, polysomnography (PSG) recordings are traditionally scored in 30-s epochs for pragmatic, not physiological, reasons and vary in electrode count, montage, and subject characteristics. These constraints challenge harmonized multi-center studies and the discovery of robust biomarkers on shorter timescales. We present AnySleep, a deep neural network that scores sleep from any electroencephalography (EEG) or electrooculography (EOG) data at adjustable temporal resolutions. We trained and validated the model on over 20,000 overnight recordings (> 200,000 hours of EEG and EOG) from 28 datasets across multiple clinics to promote robust generalization across sites. The model attains state-of-the-art performance and surpasses or equals established baselines at 30-s epochs. Performance improves with more channels, yet remains strong when EOG is absent or only EOG or single EEG derivations (frontal, central, or occipital) are available. On sub-30-s timescales, the model captures short wake intrusions consistent with arousals and improves prediction of pathophysiological conditions (obstructive sleep apnea, narcolepsy type 1, insomnia) over 30-s scoring. We make the model publicly available to facilitate large-scale studies with heterogeneous electrode setups and accelerate biomarker discovery in sleep.
Niklas Grieger, Jannik Raskob, Siamak Mehrkanoon +1
Dec 10, 2025q-bio.NC

NeuroSketch: A Practical Design Recipe for Neural Decoding

Neural decoding is fundamental to brain-computer interfaces, with growing applications in healthcare. Previous research has focused on leveraging signal processing and deep learning methods to enhance neural decoding performance. However, systematic guidance on architectural design for neural decoding remains limited. In this study, we develop NeuroSketch, a practical design recipe for neural decoding, through a basic architecture study followed by macro- and micro-level optimization. Comparing nine basic architectures, we find that CNN-2D outperforms other architectures in neural decoding tasks and explore its effectiveness from temporal and spatial perspectives. Building on this backbone, we combine gradual feature-map expansion and early downsampling at the macro level with grouped convolutions at the micro level. These choices form the recipe, which we instantiate as NeuroSketch-Base (1.4M parameters) and NeuroSketch-Large (4.2M parameters). The recipe is developed and evaluated through nearly 5,000 experiments across eight tasks spanning visual, auditory, and speech modalities and EEG, SEEG, and ECoG signals. Against ten baselines, the two variants collectively achieve the best accuracy on each task. Our code is available at https://github.com/Galaxy-Dawn/NeuroSketch.
Gaorui Zhang, Zhizhang Yuan, Jialan Yang +4
Dec 9, 2025cs.AI

DeepFeature: LLM-Empowered Context-aware Feature Generation for Wearable Biosignals

Biosignals collected from wearable devices are widely utilized in healthcare applications. Machine learning models used in these applications often rely on features extracted from biosignals due to their effectiveness, lower data dimensionality, and wide compatibility across various model architectures. However, existing feature extraction methods often lack task-specific contextual knowledge, struggle to identify optimal features in high-dimensional combinatorial feature space, and are prone to automated code generation and execution errors. In this paper, we propose DeepFeature, the first LLM-empowered, context-aware feature generation framework for wearable biosignals. DeepFeature introduces a multi-source feature generation mechanism that integrates the inherent ability of LLMs, expert knowledge and inter-feature interactions. It also employs an iterative feature refinement process that uses feature assessment-based feedback for feature re-selection. Additionally, DeepFeature utilizes a robust multi-layer filtering and verification approach for feature description-to-code translation to ensure that the feature extraction functions run without crashing. Experimental evaluation results show that DeepFeature achieves the highest average AUROC across eight tasks under both sample-level and subject-level settings, outperforming the best baselines by 4.60% and 4.61%, respectively. DeepFeature achieves the most pronounced gains on the PPG-BP tasks, while remaining competitive with the best-performing baselines on Epilepsy, WESAD, and our self-collected SEN dataset.
Kaiwei Liu, Yuting He, Bufang Yang +6
Nov 24, 2025cs.LG

Geometry-Aware Deep Congruence Networks for Manifold Learning in Cross-Subject Motor Imagery

Cross-subject motor imagery decoding remains a fundamental challenge in EEG-based brain-computer interfaces due to substantial inter-subject variability. Recent approaches have leveraged Riemannian geometry by representing EEG signals as covariance matrices on the symmetric positive definite (SPD) manifold. However, existing methods primarily focus on manifold-based representations while largely overlooking subject-specific variations in covariance dispersion and orientation. In this work, we address these challenges through geometry-aware congruence transformations and propose three complementary models: (i) Discriminative Congruence Transform (DCT), (ii) Deep Linear DCT (DLDCT), and (iii) Deep DCT-UNet (DDCT-UNet). The proposed models are evaluated both as manifold alignment modules for downstream classifiers and as end-to-end discriminative architectures optimized via cross-entropy with a custom logistic regression head. Experiments on challenging cross-subject motor imagery benchmarks demonstrate consistent improvements in transductive decoding performance, achieving 2-3% higher accuracy than strong baselines. These results highlight the effectiveness of geometry-aware congruence learning for mitigating inter-subject variability in EEG decoding.
Sanjeev Manivannan, Chandra Shekar Lakshminarayan
Oct 17, 2025cs.CV

Cortical-SSM: A Deep State Space Model for Motor Imagery Decoding from EEG Signals

Classification of electroencephalogram (EEG) signals obtained during motor imagery (MI) has substantial application potential, including communication assistance and rehabilitation support for patients with motor impairments. These signals remain inherently susceptible to physiological artifacts (e.g., eye blinking and swallowing), which pose persistent challenges. Although Transformer-based approaches for classifying EEG signals have been widely adopted, they often struggle to capture fine-grained dependencies within them. To overcome these limitations, we propose Cortical-SSM, a novel architecture that extends deep state space models to capture integrated dependencies of EEG signals across temporal, spatial, and frequency domains. We validated our method across two large-scale public MI EEG datasets containing more than 50 subjects. Our method outperformed baseline methods on both benchmarks. Furthermore, visual explanations derived from our model indicate that it effectively captures neurophysiologically relevant regions of EEG signals. These results indicate that Cortical-SSM provides a robust and interpretable alternative to attention-based architectures for MI EEG decoding. By enabling physiologically grounded feature learning, our method advances the reliability of subject-independent EEG classification and supports the development of practical and clinically deployable brain-computer interface systems.
Shuntaro Suzuki, Shunya Nagashima, Komei Sugiura
Sep 30, 2025cs.LG

EEG-based AI-BCI Wheelchair Advancement: Transformer-Based Learning with Motor Imagery for Brain Computer Interface

This paper presents an Artificial Intelligence (AI) integrated approach to Brain-Computer Interface (BCI)-based wheelchair development, utilizing a motor imagery right-left-hand movement mechanism for control. The system is designed to simulate wheelchair navigation based on motor imagery right and left-hand movements using electroencephalogram (EEG) data. A pre-filtered dataset, obtained from an open-source EEG repository, was segmented into arrays of 19x200 to capture the onset of hand movements. The data was acquired at a sampling frequency of 200Hz. The system integrates a Tkinter-based interface for simulating wheelchair movements, offering users a functional and intuitive control system. We propose TFormerEEG, a Transformer-driven deep learning architecture, for motor imagery EEG classification. The model achieves a test accuracy of 93.04% compared with various machine learning baseline models, including XGBoost, EEGNet, and an EEG-Deformer model. The TFormerEEG achieved a mean accuracy of 91.18% through stratified cross-validation, showcasing the effectiveness of this model.
Bipul Thapa, Biplov Paneru, Bishwash Paneru +1
Sep 22, 2025cs.LG

SingLEM: Single-Channel Large EEG Model

Current deep learning models for electroencephalography (EEG) are often task-specific and depend on large labeled datasets, limiting their adaptability. Although EEG foundation models seek broader applicability, many still rely on predefined multi-channel inputs, electrode-layout assumptions, or model-specific channel handling. To address these limitations, we introduce the Single-Channel Large EEG Model (SingLEM), a self-supervised foundation model whose hybrid convolutional--Transformer encoder maps each channel independently to a reusable representation capturing local and long-range temporal structure. These representations can be used individually or combined through channel-wise feature concatenation. We assembled 71 public EEG datasets comprising approximately 9,200 subjects and 357,000 single-channel hours. For leakage-controlled evaluation, downstream results were obtained with a model pretrained on 68 datasets after excluding the three source datasets underlying the six tasks. A model pretrained on all 71 datasets is provided for general reuse. Across six motor imagery and cognitive tasks under strict leave-one-subject-out (LOSO) evaluation, the leakage-controlled model with concatenated representations and a support vector machine (SVM) classifier achieved the best overall performance among the compared pretrained and classical feature-based methods. Additional classifier and subject-adapted analyses supported the robustness of its representations. These findings support single-channel self-supervised learning as a montage-flexible foundation for reusable EEG feature extraction and electrode-level spatial analysis. The source code and pretrained models are available at https://github.com/ttlabtuat/SingLEM.
Jamiyan Sukhbaatar, Satoshi Imamura, Ibuki Inoue +5
Aug 28, 2025cs.NE

Encoding Tactile Stimuli for Braille Recognition with Organoids

This study proposes a transferable encoding strategy that maps tactile sensor data to electrical stimulation patterns, enabling neural organoids to perform an open-loop artificial tactile Braille classification task. Human forebrain organoids cultured on a low-density microelectrode array (MEA) are systematically stimulated to characterize the relationship between electrical stimulation parameters (number of pulse, phase amplitude, phase duration, and trigger delay) and organoid responses, measured as spike activity and spatial displacement of the center of activity. Implemented on event-based tactile inputs recorded from the Evetac sensor, our system achieved an average Braille letter classification accuracy of 61% with a single organoid, which increased significantly to 83% when responses from a three-organoid ensemble were combined. Additionally, the multi-organoid configuration demonstrated enhanced robustness against various types of artificially introduced noise. This research demonstrates the potential of organoids as low-power, adaptive bio-hybrid computational elements and provides a foundational encoding framework for future scalable bio-hybrid computing architectures.
Tianyi Liu, Hemma Philamore, Benjamin Ward-Cherrier
Aug 28, 2025cs.LG

EEGDM: Learning EEG Representation with Latent Diffusion Model

Recent advances in self-supervised learning for EEG representation have largely relied on masked reconstruction, where models are trained to recover randomly masked signal segments. While effective at modeling local dependencies, the training objective of masked reconstruction does not compel the model to capture global generative constraints essential for characterizing neural activity. To address this limitation, we propose EEGDM, a novel self-supervised framework that leverages latent diffusion models to generate EEG signals as an objective. Unlike masked reconstruction, diffusion-based generation progressively denoises signals from noise to realism, compelling the model to capture holistic temporal patterns and cross-channel relationships. Specifically, EEGDM incorporates an EEG encoder that distills raw signals and their channel augmentations into a compact representation, which serves as conditional information to guide the diffusion denoising process, thereby enabling the encoder and diffusion model to be jointly optimized through the generative objective. This design endows EEGDM with a compact latent space, which not only offers ample control over the generative process but also can be leveraged for downstream tasks. Experimental results show that EEGDM (1) reconstructs high-quality EEG signals, (2) learns robust representations, and (3) achieves competitive performance across diverse downstream tasks, thus exploring a new direction for self-supervised EEG representation learning.
Shaocong Wang, Tong Liu, Yihan Li +6
May 15, 2025cs.CL

Decoding the Multimodal Mind: Generalizable Brain-to-Text Translation via Multimodal Alignment and Adaptive Routing

Decoding language from the human brain remains a grand challenge for Brain-Computer Interfaces (BCIs). Current approaches typically rely on unimodal brain representations, neglecting the brain's inherently multimodal processing. Inspired by the brain's associative mechanisms, where viewing an image can evoke related sounds and linguistic representations, we propose a unified framework that leverages Multimodal Large Language Models (MLLMs) to align brain signals with a shared semantic space encompassing text, images, and audio. A router module dynamically selects and fuses modality-specific brain features according to the characteristics of each stimulus. Experiments on various fMRI datasets with textual, visual, and auditory stimuli demonstrate state-of-the-art performance, achieving an 8.48% improvement on the most commonly used benchmark. We further extend our framework to EEG and MEG data, demonstrating flexibility and robustness across varying temporal and spatial resolutions. To our knowledge, this is the first unified BCI architecture capable of robustly decoding multimodal brain activity across diverse brain signals and stimulus types, offering a flexible solution for real-world applications.
Chunyu Ye, Yunhao Zhang, Jingyuan Sun +3
Feb 17, 2025cs.AI

A Survey on Bridging EEG Signals and Generative AI: From Image and Text to Beyond

Decoding neural activity into human-interpretable representations is a key research direction in brain-computer interfaces (BCIs) and computational neuroscience. Recent progress in machine learning and generative AI has driven growing interest in transforming non-invasive Electroencephalography (EEG) signals into images, text, and audio. This survey consolidates and analyzes developments across EEG-to-image synthesis, EEG-to-text generation, and EEG-to-audio reconstruction. We conducted a structured literature search across major databases (2017-2025), extracting key information on datasets, generative architectures (GANs, VAEs, transformers, diffusion models), EEG feature-encoding techniques, evaluation metrics, and the major challenges shaping current work in this area. Our review finds that EEG-to-image models predominantly employ encoder-decoder architectures built on GANs, VAEs, or diffusion models; EEG-to-text approaches increasingly leverage transformer-based language models for open-vocabulary decoding; and EEG-to-audio methods commonly map EEG signals to mel-spectrograms that are subsequently rendered into audio using neural vocoders. Despite promising advances, the field remains constrained by small and heterogeneous datasets, limited cross-subject generalization, and the absence of standardized benchmarks. By consolidating methodological trends and available datasets, this survey provides a foundational reference for advancing EEG-based generative AI and supporting reproducible research. We further highlight open-source datasets and baseline implementations to facilitate systematic benchmarking and accelerate progress in EEG-driven neural decoding.
Shreya Shukla, Jose Torres, Akshaj Murhekar +4
Nov 15, 2023eess.SP

Uncertainty Quantification in Machine Learning for Biosignal Applications -- A Review

Purpose: Uncertainty Quantification (UQ) has gained traction in an attempt to improve the interpretability and robustness of machine learning predictions. Specifically (medical) biosignals such as electroencephalography (EEG), electrocardiography (ECG), electrooculography (EOG), and electromyography (EMG) could benefit from good UQ, since these suffer from a poor signal-to-noise ratio, and good human interpretability is pivotal for medical applications. To determine how uncertainty estimation can be used for biosignal tasks, we investigate current methods, use cases, applications, evaluations, and uncertainty measures. Methods: In this paper, we systematically review the state of the art of applying Uncertainty Quantification to Machine Learning tasks in the biosignal domain. All works from Web of Science, Scopus, IEEE XPlore and PsycINFO that discuss uncertainty in Machine Learning on one of the aforementioned biosignals is included. Results: We present various methods, shortcomings, uncertainty measures and theoretical frameworks that currently exist in this application domain based on the 53 reviewed papers and related literature. We address misconceptions in the field, provide recommendations for future work, and discuss gaps in the literature in relation to diagnostic implementations as well as control for prostheses or brain-computer interfaces. Conclusion: Overall it can be concluded that promising UQ methods are available, but that research is needed on how people and systems may interact with an uncertainty-model in a (clinical) environment.
Ivo Pascal de Jong, Andreea Ioana Sburlea, Matias Valdenegro-Toro
Jan 10, 2020eess.SP

Time-Varying Graph Learning with Constraints on Graph Temporal Variation

We propose a novel framework for learning time-varying graphs from spatiotemporal measurements. Given an appropriate prior on the temporal behavior of signals, our proposed method can estimate time-varying graphs from a small number of available measurements. To achieve this, we introduce three regularization terms in convex optimization problems that constrain the sparseness of temporal variations of the time-varying networks. Moreover, a computationally scalable algorithm is introduced to solve the optimization problem efficiently. The experimental results with synthetic and real datasets (point cloud, temperature, and EEG data) demonstrate that our proposed method outperforms state-of-the-art methods.
Haruki Yokota, Koki Yamada, Yuichi Tanaka +1
Date pendingcs.LG

Learning Generalizable Reconstruction of High-Dimensional Neural Dynamics

Accurate reconstruction of long-duration neural recordings is challenging because local field potentials (LFPs) are high-resolution, multichannel, transient, and variable across subjects. We present PCA-DMD, a scalable operator-theoretic framework that segments LFP recordings into overlapping windows, projects them into a compact PCA space, learns linear Koopman evolution in the latent space, and reconstructs continuous signals through inverse projection and overlap-add aggregation. On 200,000-sample hippocampal recordings, PCA-DMD outperformed Classical DMD, SpDMD, MrDMD, and HODMD, achieving KLD=0.0761 and HD=0.0847. In all-pair cross-subject zero-shot generalization at 300,000 samples, correlations were 0.9504-0.9800, with HD=0.0010-0.0072 and KLD=0.0005-0.0022, without target-subject fine-tuning. The prediction showed close one-step agreement on temporally held-out LFP segments across the unseen interval and multiple channels. Scalability analysis from 400,000 to 900,000 samples showed stable zero-shot reconstruction, with mean correlation remaining about 0.965-0.968 while computational cost increased predictably. External validation on an independent 93-channel Allen Neuropixels recording yielded mean and median channel-wise correlations of 0.7427 and 0.7990, respectively. Koopman spectral and mode analyses revealed dominant eigenvalues concentrated near the unit circle. PCA-DMD therefore provides an interpretable, generalizable, and computationally scalable framework for reconstructing high-dimensional neural dynamics.
Anima Kujur, Zahra Monfared