Electroencephalography Spatial Super-Resolution

Achieving stable long-term neural decoding in invasive brain-machine interfaces (BMIs) remains challenging due to variations in recorded neural populations across sessions. Current latent alignment approaches may overlook task-dependent structure during cross-session adaptation. We propose Task-Conditioned Latent Alignment (TCLA), a framework that stabilizes neural decoding by learning a shared latent space. TCLA learns a low-dimensional source representation using neural reconstruction and continuous behavioral supervision. During target-session adaptation, the shared representation is fixed, while target neural activity is mapped into the source latent space by aligning source and target distributions separately for each task condition. We evaluated TCLA on seven nonhuman primate datasets spanning multiple tasks. In long-term cross-session evaluation, TCLA achieved a mean $R^2$ of $0.476\pm0.014$ with a negative $R^2$ failure rate of only 6.8%. Across 1,356 within-subject session pairs, TCLA achieved a mean $R^2$ of $0.371\pm0.009$ with a failure rate of 6.8%. Across 2,134 cross-subject session pairs, TCLA achieved a mean $R^2$ of $0.218\pm0.004$ with a failure rate of 12.9%, substantially better than those of the comparison methods. These results demonstrate that by preserving behaviorally relevant and task-dependent latent structure, TCLA improves the robustness of neural decoding across recording sessions and subjects. The source code is publicly available at \href{https://github.com/FAMD-CASIA/TCLA}{https://github.com/FAMD-CASIA/TCLA}.

Zero-shot brain-to-image retrieval requires robust alignment between noisy EEG responses and visual representations. Existing EEG-vision alignment methods often operate in sensor space and apply fixed visual supervision to all responses, ignoring both spatial mixing in scalp EEG and response-wise variability in alignment reliability. We propose an adaptive cortically constrained EEG-vision alignment method for zero-shot brain-to-image retrieval. The method reconstructs EEG responses into predefined ROI-level source-pattern representations and encodes them with a Neuro-ROI Attention Encoder. To handle response-wise variability, we introduce an evidence-based adaptive visual supervision strategy that weights detail-controlled visual targets using model-based alignment evidence. On THINGS-EEG, the proposed method achieves strong 200-way zero-shot retrieval performance, with ROI-level attribution providing post hoc interpretability of the learned source-pattern representations. These results show that cortically constrained representation learning and adaptive supervision can jointly support EEG-vision alignment for zero-shot brain-to-image retrieval.

While deep learning has enabled language decoding from intracranial brain recordings, extending this capability to non-invasive recordings remains an unresolved challenge. Decoding individual words from non-invasive brain recordings is particularly difficult, as word-level neural evidence is weak, temporally distributed, and entangled with acoustic, lexical, and semantic structure. Existing retrieval pipelines often collapse these factors into a single representation, potentially discarding information available at intermediate temporal scales. Here, we introduce Hierarchical Dynamic Neural Decoding (HDND), a hierarchical dynamic decoding framework that treats word decoding as structured refinement rather than flat label retrieval. HDND combines intermediate neural representations, contextual semantic predictions, and, for selected reading conditions, an auxiliary character-form objective. We evaluate HDND across seven electroencephalography (EEG) and magnetoencephalography (MEG) datasets spanning English, Dutch, Mandarin, and Cantonese listening, reading, and reading-aloud conditions. Across the nine-condition word-retrieval benchmark, the proposed HDND yields a higher participant-averaged balanced Top-10 point estimate than the matched contextual word-decoding baseline in every condition and achieves the highest mean among all compared methods in eight of nine conditions. Across the same nine matched conditions, HDND also yields higher token-micro and pooled word-macro Top-10 point estimates in every setting. Sentence retrieval favors HDND in eight of nine conditions, while auditory speech-segment retrieval is mixed across the six listening conditions. These results show that hierarchical residual refinement can improve multilingual word retrieval from heterogeneous non-invasive brain recordings.

Pretrained EEG foundation models are increasingly proposed as general-purpose encoders for brain-computer interfaces, yet recent benchmarks disagree about when their representations transfer to downstream tasks. We audit LaBraM and CBraMod on motor imagery under a validation-locked protocol in which preprocessing, architecture, optimization, freeze depth, checkpoint, temperature, and method selection are determined using training-session data only. On four-class BCI Competition IV-2a, every supervised comparator evaluated here outperforms every foundation-model configuration, including validation-selected fine-tuning. We then examine a key confound: foundation models and task-specific decoders are normally evaluated using different input pipelines. Retraining three supervised architectures on the broadband arrays consumed by the foundation models produces matched-input accuracy differences of opposite sign across architectures: broadband input improves ATCNet by 0.078 accuracy while reducing EEG Conformer accuracy by 0.088. None of the three individual matched-input terms is significant after multiple-comparison correction at n = 9, so we treat the sign variation descriptively rather than as a formal architecture-by-pipeline interaction. These observed sign differences suggest that a single comparator may not provide an architecture-invariant decomposition of a pretrained-versus-supervised performance gap. The four-class deficit also does not reproduce uniformly across motor-imagery datasets: on two-class BNCI2014-004 we cannot detect the same separation between fine-tuned CBraMod and the supervised comparators. Finally, validation-fitted temperature scaling returns foundation-model calibration error to the supervised range despite substantially lower four-class accuracy.

Generative models of neural activity could help characterize tissue dynamics, compare experimental conditions, and simulate population activity for applications ranging from disease and drug-response studies to closed-loop experimentation. Existing approaches, however, typically assume a fixed set of sorted neurons, whereas high-density microelectrode arrays produce extremely sparse, array-wide binary spike volumes in which the observed subset of electrodes varies across assays. We introduce a discrete generative model that represents this activity using a shared vocabulary of spatiotemporal motifs. A residual vector-quantized autoencoder learns the motif vocabulary, while a factorized masked transformer predicts where activity occurs and which motif appears at each active location. We evaluate the model on 31 assays spanning human brain organoids and acute \emph{ex vivo} human hippocampal tissue. The learned motifs are broadly reused: assay identity explains only $9$ of the entropy in motif use, and motif overlap across tissue types is comparable to overlap within them. When representation quality is evaluated independently of the generative prior, our approach achieves $5.2\times$ the voxel-level reconstruction average precision of a matched flat tokenizer. For masked completion and free generation, the full model achieves $1.4$--$2.6\times$ the site-level average precision of the matched generative baseline and outperforms it across all four families of generation metrics. These results establish a compact, reusable representation for array-wide spiking activity without learned assay-specific parameters, providing a scalable foundation for generative modeling across diverse neural preparations.

The categorization of cognitive and resting states derived from electroencephalography (EEG) signals is crucial for comprehending fluctuations in brain activity linked to various mental states. EEG provides a non-intrusive approach for documenting brain function in both resting and task-oriented cognitive conditions, whilst deep learning techniques enable the automatic extraction of significant patterns from intricate EEG data. This study presents a deep learning framework to distinguish between resting and cognitive states through EEG records. The proposed framework integrates a Convolutional Neural Network (CNN) stacked with a Gated Recurrent Unit (GRU) for the extraction of features from EEG signals. Time-frequency analysis is conducted to explore the salient aspects of signals, and the derived features are then assessed utilizing conventional deep learning and machine learning classifiers, including the suggested 2D-Net architecture. The proposed approach and feature extraction strategy outperform the evaluated comparative methods, achieving accuracies of 83.177% for resting-versus-mathematical task classification, 76.107% for resting-versus-memory task classification, and 83.432% for resting-versus-music task classification. The findings illustrate the efficacy of integrating signal processing with deep learning methodologies to discriminate resting from cognitive states utilizing EEG signals.

Effective EEG decoding requires representations that preserve organization among channels, local waveform dynamics, and long-range temporal context. Existing EEG architectures often capture these structures using separate specialized modules or collapse them into a single token sequence, making it difficult to maintain their distinct roles and coordinate their interactions throughout the backbone. We propose TriDim, a reusable block that preserves the representation shape and keeps three EEG axes explicit: channel, sample position within each patch, and patch position across the recording. These axes correspond to spatial, short-term temporal, and long-term temporal information, respectively. Each TriDim block applies feed-forward transformations along individual axes and cross-axis attention to coordinate information exchange among them. By stacking TriDim blocks with a multi-level tri-axis readout, we construct TriDimEEG, a standalone EEG decoder. Under strict cross-subject evaluation on eight datasets spanning clinical diagnosis, sleep staging, motor imagery, and emotion recognition, TriDimEEG achieves the best overall performance among fifteen evaluated models, with a 4.3% relative improvement in average accuracy over the second-best model. Replacing Transformer blocks in three EEG foundation models with TriDim blocks yields an average relative improvement of 7.4% in downstream accuracy while reducing parameter counts by 17.0% to 47.3%. These results establish TriDim as an effective and reusable building block and TriDimEEG as a strong standalone EEG decoder. Code and parameters of TriDimEEG are available at https://github.com/ncclab-sustech/TriDim_model.

Intracranial electroencephalography (iEEG) is widely used to record electrical activity directly from electrodes inside the human brain, making it an attractive modality for neural decoding. However, progress in iEEG decoding, especially toward general-purpose foundation models, remains difficult to measure reliably: datasets are task- or institution-specific, limiting evidence of generalization across tasks and recording environments, and preprocessing choices can strongly influence performance, making model improvements difficult to distinguish from preprocessing gains. Thus, we introduce iMINDBench, an iEEG Multi-Institution Neural Decoding Benchmark that evaluates models on a shared suite of fifteen decoding tasks across three naturalistic movie-watching datasets. The benchmark additionally defines standardized preprocessing tracks and fixed evaluation splits to support consistent model comparisons. Using iMINDBench, we find that the evaluated pretrained systems generally outperform baselines within their respective preprocessing tracks, while strong spectral baselines remain competitive across institutional datasets. In our scaling study, adding up to 25 times more supervised data from other subjects or institutions yields only small or task-dependent gains over within-session training. Together, these findings highlight the need for iEEG models that improve on strong preprocessing baselines and make more effective use of data across subjects and institutions. Project website: https://imindbench.github.io/

EEG decoding tasks can rely on different temporal dynamics and cross-channel relationships. We test whether specialized modules improve a fully fine-tuned EEG foundation model by augmenting CBraMod with cross-depth Attention Residuals (AttnRes) and two soft-routed expert banks. Across matched three-seed experiments on FACED, ISRUC, SEED-V, and PhysioNet-MI, the complete model changes mean balanced accuracy relative to full fine-tuning by -0.12, +1.27, +0.77, and -1.27 points, respectively. AttnRes alone improves mean balanced accuracy on three datasets, whereas adding experts on top of AttnRes helps only FACED and SEED-V. These gains come with substantial overhead: AttnRes requires 2.11 to 2.88x runtime and 1.78 to 2.67x memory, while the complete model requires 2.41 to 3.04x runtime and 1.86 to 2.85x memory. Overall, the added modules produce dataset-dependent, sometimes opposing effects rather than consistent gains over full fine-tuning.

EEG foundation models such as BIOT, LaBraM, and EEGMamba have achieved remarkable performance in neural signal decoding, but their black-box nature limits clinical trust and neuroscientific validation. We propose a unified attribution framework for interpreting EEG foundation models across heterogeneous architectures. The framework integrates gradient-, perturbation-, and activation-based explanation methods to analyze model behavior in spatial, temporal, and frequency dimensions. Spatially, it identifies critical EEG channels and visualizes their distributions using topographic maps. Temporally, it highlights decision-relevant signal segments through attribution heatmaps. In the frequency domain, it quantifies the contributions of canonical EEG rhythms via spectral perturbation analysis. To assess explanation reliability, we introduce a population-level evaluation combining Area Over the Perturbation Curve (AOPC) and cross-method consistency analysis. The framework further leverages Large Language Models (LLMs) to transform structured attribution outputs into natural-language reports, bridging low-level neural representations and high-level semantic reasoning. Experiments on benchmark datasets, including Mumtaz2016 and TUAB, demonstrate that the generated explanations are consistent with established neurophysiological markers, validating meaningful neural representations while exposing potential dependencies on artifacts and spurious patterns. The proposed framework provides a standardized approach for evaluating the interpretability, reliability, and physiological plausibility of EEG foundation models.

Finger-level motor decoding is important for naturalistic brain-computer interface (BCI) control, yet individual-finger decoding from scalp electroencephalography (EEG) remains challenging because finger representations are spatially close in the sensorimotor cortex and blurred by volume conduction. Leveraging the high spatial resolution of functional MRI (fMRI), we introduce fMRI Representation-Informed Shared-Space Training (FRIST), a two-stage EEG decoding framework that first learns fMRI-informed spectral projections from simultaneous EEG-fMRI recordings and then uses fMRI-derived class geometry to guide residual refinement of EEG predictions. FRIST transfers information across recordings through shared finger labels without requiring paired trials and uses only EEG at inference. We evaluated 12 able-bodied participants during movement execution (ME) and motor imagery (MI) under two-class and three-class chronological session-held-out decoding simulating the online scenario. Using EEGNet as the EEG feature extractor, FRIST increased group average accuracy from 66.93% to 74.53% for two-class ME, from 44.83% to 56.58% for three-class ME, from 80.78% to 85.63% for two-class MI, and from 60.93% to 69.90% for three-class MI compared with the EEG-only EEGNet baseline. FRIST is also shown to improve EEG-only decoding when the target participant's own fMRI data were unavailable. FRIST also generalized across multiple EEG decoding backbones, reaching 87.40% in two-class MI and 72.54% in three-class MI with EEG Conformer as the EEG feature extractor. These findings indicate that fMRI provide useful spatial constraints for EEG representation learning. FRIST improves noninvasive EEG-based finger-level BCI decoding, offering a multimodal strategy for integrating the spatial specificity of fMRI with real-time applicability of EEG.

Learning robust representations for time-series signals under noise and distribution shifts remains challenging, especially in clinical applications such as electroencephalogram (EEG) and electrocardiogram (ECG) analysis. We propose Diffusion-Conditioned Representation Alignment (DCRA), a training framework that repurposes the forward diffusion process as a structured corruption scheduler for representation learning. Different from conventional augmentation and consistency-based methods that rely on independently sampled perturbations, DCRA introduces a structured corruption trajectory via the diffusion forward process, which enables continuous and controlled representation evolution across noise levels. We introduce a feature-level consistency objective that aligns representations across noise levels while preserving class-discriminative structure. This mechanism promotes structure-preserving consistency, which enables smooth and semantically coherent feature trajectories in latent space. The proposed framework is encoder-agnostic and can be integrated with state space models and Transformer architectures. The seizure detection experiments on the CHB-MIT EEG dataset show that DCRA consistently improves performance under multiple noise conditions and achieves higher sensitivity at low false-positive rates. Analysis reveals that DCRA produces more balanced and structured representations compared to baseline and diffusion-only models. These findings highlight the benefit of combining structured corruption with representation alignment for robust time-series learning.

The growing use of electroencephalography (EEG) motivates automated analysis that is accurate, transferable, and deployable on constrained hardware. Recent EEG foundation models learn general representations from large-scale pretraining, but their size and computational cost limit edge and wearable deployment. We introduce BRIDGE-EEG, an efficient multi-task EEG classification pipeline that preserves the benefits of pretraining while reducing model size. A unified preprocessing scheme maps heterogeneous recordings with different channel counts, montages, and sampling rates to a device-agnostic 62-channel time--frequency representation. We pretrain an SE-ResNet18 teacher (11.84 M parameters) with SimCLR on unlabeled EEG from five heterogeneous datasets, then compress it into SE-ResNet8 (1.56 M) and SE-ResNet4 (0.48 M) students using task-agnostic and task-specific distillation. We evaluate six benchmarks spanning abnormality detection, motor imagery, and emotion recognition. For abnormality detection and emotion recognition, the students achieve accuracy comparable to or better than several recent EEG foundation models with 10--1,000$\times$ more parameters. Motor imagery shows a remaining representation gap, highlighting the importance of pretraining diversity. Inference profiling on a server GPU, desktop CPU, and NVIDIA Jetson Orin Nano shows up to 3.0$\times$ lower edge energy per inference (15.64 mJ vs. 46.67 mJ). The compact models further support future deployment on MCU-class wearables.

This study evaluated personalized gait phase estimation for stroke survivors using functional inertial measurement unit (IMU) alignment and two-stage sequential adaptation of models pre-trained on healthy gait. The estimator used signals from a thigh-mounted IMU. Heel force-sensitive resistor measurements provided reference phase labels for offline adaptation and evaluation. Stage 1 established a distillation-regularized participant-specific model, and Stage 2 performed conditional refinement using low-rank adaptation. Long Short-Term Memory (LSTM), Temporal Convolutional Network (TCN), and Transformer models were evaluated in five stroke survivors walking with a powered knee exoskeleton using leave-one-subject-out hyperparameter selection and sequential test-then-adapt Stage 2 replay. Relative to the non-adapted baselines, Stage 1+2 reduced the mean participant-wise phase root mean square error by 84.2%, 77.0%, and 60.7%, respectively. The Transformer achieved the lowest final error (2.90 +- 1.13$% of the gait cycle) and heel-strike timing error (23.7 +- 4.5ms). Policy-specific ablations showed that every-cycle updates generally produced the lowest or near-lowest error, whereas conditional updating reduced the update frequency with small accuracy differences. After personalization, alignment produced model-dependent changes in phase error while preserving or improving heel-strike detection and reducing heel-strike timing error for the LSTM and Transformer. Concurrent embedded tests showed that the TCN and Transformer maintained 100-Hz inference during Stage 2 updates without deadline misses, whereas the LSTM missed the 10-ms deadline in 6.6% of inferences. All updates completed within 0.8s. These results support the offline feasibility and embedded computational timing of the proposed framework for exoskeleton-assisted walking.

Masked reconstruction is widely used for EEG foundation models, but optimizing reconstruction on low-SNR waveforms does not necessarily produce the most useful latent representation. We introduce MANAS-2, a new EEG foundation model that combines a Raw-Band Hybrid (RBH) masked autoencoder with Constrained Reconstruction (ConRec), a physics-motivated regularizer. RBH jointly reconstructs temporal waveform patches and compact spectral-band targets, while ConRec acts only on the temporal decoder output, penalizing differences in RMS energy between adjacent short windows of the reconstructed waveform. ConRec is intended to shape the encoder by biasing it toward the organization of oscillatory-envelope information. Across seven held-out EEG datasets, adding ConRec to an otherwise identical RBH model increases frozen ridge recovery of six-band spectral power from mean R^2=0.860 to 0.906 and recovery of inter-patch band-energy dynamics from R^2=0.283 to 0.354, while temporal waveform information remains highly recoverable from the frozen latents. Applied to a temporal-only masked autoencoder, ConRec also improves frozen downstream transfer and frequency-dependent latent geometry despite receiving no spectral targets: i.e., the effects of ConRec are architecture-independent. MANAS-2 also outperforms leading EEG Foundation Models on most downstream knowledge-transfer tasks. From the effects of ConRec, we see that a physically motivated constraint imposed through the decoder can make for a more spectrally organized and transferable latent space. MANAS-2 therefore provides a new EEG foundation model built around constrained reconstruction as a mechanism for shaping representation--rather than reconstruction--quality.

Clinical electroencephalography (EEG) data are valuable for healthcare research and for developing artificial intelligence (AI)-based clinical decision-support systems, but EEG recordings and derived features may contain sensitive patient-specific information. This creates privacy risks when data are reused, analyzed, or shared across clinical and research environments. Conventional anonymization methods are often insufficient for high-dimensional biomedical signals, since removing direct identifiers does not necessarily prevent re-identification, linkage, or inference risks. At the same time, strong privacy protection may distort clinically relevant signal characteristics and reduce data utility. This paper studies subject-level differential privacy for protecting clinical EEG-derived feature representations using Gaussian and Laplace perturbations. The proposed framework considers three deployment scenarios: client-side anonymization, centralized server-side anonymization, and decentralized local training. Following EEG preprocessing and feature extraction, Gaussian and Laplace perturbations are applied to the resulting patient-level EEG feature representations. The Laplace experiments evaluate the implemented noise scales, while the scales required for formal full-vector calibration are derived separately. The effects of both perturbations are assessed using statistical utility measures and a downstream machine-learning-based utility check. The results show that differentially private perturbation can be integrated into EEG processing workflows, but the selected mechanism, privacy parameters, and sensitivity calibration strongly influence data utility. The study highlights the practical privacy-utility trade-off in DP-based EEG feature anonymization and the challenges of preserving downstream utility in small and imbalanced clinical EEG datasets.

P300 brain-computer interface (BCI) spellers can provide hands-free communication for people with severe motor impairments. Modern pipelines combine multiple individually promising components, often assuming that 'more-is-better'. We tested this assumption using a four-component full-factorial experiment varying the inclusion of Euclidean Alignment (EA), xDAWN spatial filtering, subject calibration, and language model priors on a public P300 dataset. Performance was evaluated using accuracy, repetitions, and information transfer rate (ITR) with mixed-effects models. Results show that the value of components is conditional rather than additive. Calibration was the strongest singular contributor, while EA compensated for its absence in zero-calibration settings. Adding independently useful components could also reduce performance, revealing component anti-synergy. Contrary to conventional wisdom, LM support was not universally beneficial: its effect depends strongly on the strength of the underlying EEG pipeline, while results from a larger LM showed a similar pattern. Together, these findings challenge maximal 'all-on' pipeline design and highlight the value of selecting spatial and language-support components according to the quality of available EEG evidence.

Non-invasive speech decoding remains constrained by the low signal-to-noise ratio of neural recordings, which makes fine-grained reconstruction of phonemes or individual words difficult. Motivated by neuroscientific evidence that high-level semantic representations are distributed across cortical regions and evolve over slower temporal scales, we hypothesize that semantic content may provide a more suitable target for non-invasive decoding than low-level acoustic or lexical features. We introduce Brain2Semantics2Text, a method that reconstructs text through an intermediate semantic embedding space. Our model maps sentence-level MEG responses into a semantic manifold and then inverts the predicted embeddings into natural language. This semantic bottleneck enables recovery of high-level meaning without word-level alignment. We describe the core principles of the approach, its implementation, and the strategies used to mitigate the challenges of learning a reliable neural-to-semantic mapping. Finally, we compare against prior non-invasive Brain2Text methods and show improved sentence-level results.

Electroencephalography (EEG)-based motor-imagery brain-computer interfaces (MI-BCIs) vary across subjects and sessions, complicating personalization from limited calibration data. Federated learning can exploit shared representations without centralizing raw EEG, but existing federated MI studies largely assume regular synchronization. We introduce NEXUS-MI, a gateway-coordinated federated personalization framework that treats synchronization as a coupled learning-and-communication control problem. Raw EEG and classifier heads remain local, while an edge coordinator maintains the shared backbone. We evaluate NEXUS-MI through offline replay using BCI Competition IV Dataset 2a (BCICIV-2a; 9 subjects, 4 classes) and OpenBMI (54 subjects, 2 classes). Session 1 supports backbone learning, and Session 2 provides limited-calibration personalization and held-out testing. An ideal-link reference and six heterogeneous-link policies characterize gateway participation, buffering, stale-update admission, and backbone-download control. The principal comparison holds delayed-update handling fixed while contrasting non-adaptive and communication-aware synchronization. Paired subject-level comparisons use Holm adjustment, and robustness across five matched realizations is assessed by hierarchical bootstrap. Communication-aware coordination reduced server-to-client backbone traffic by approximately 42% on both datasets, while cohort-level accuracy differences were small and realization-dependent. Cohort averages also concealed subject-level vulnerability, with losses reaching approximately 12 percentage points on BCICIV-2a relative to the ideal-link reference. These findings establish gateway synchronization as an explicit design variable in federated MI personalization and motivate joint evaluation of personalized accuracy, communication cost, update freshness, and subject-level reliability.

Source-level analysis of interictal epileptiform discharges (IEDs) is relevant to presurgical evaluation and treatment planning because it helps characterize where epileptiform activity is likely to arise. Beyond detecting whether an IED is present, this setting requires assigning IED-positive activity to clinically meaningful brain-region categories. This setting is challenging because source-region evidence in short electroencephalography (EEG) windows can be subtle, partial, and affected by subject variability, class imbalance, and imperfect multimodal context. We present EEGBind, an EEG-centric multimodal binding framework for five-class source-level IED classification. EEGBind treats EEG as the primary modality and binds synchronized video-context features around an EEG-centric representation. Instead of relying on early or overly strong multimodal fusion, which may perturb the source-sensitive EEG representation, EEGBind uses video context as auxiliary evidence for robust classification. A view-consistent repair stage is further used to improve hidden-set robustness while preserving the learned source-class boundary. On the NeuroMM 2026 Grand Challenge Track 3 NMM-Source-IED benchmark, EEGBind achieves 0.8395 on weighted-F1 and outperforms strong competitors. These results support EEG-centric multimodal binding as a practical strategy for source-level IED classification. The open-source code is available at https://github.com/HKUSTGZ-ML4Health-Lab/NeuroMM2026_IED_Detection.

Dense self-attention treats all token pairs as equally plausible before learning, an interaction-isotropic prior that can be mismatched to structured signals. For structured, low signal-to-noise ratio (SNR) signals such as EEG, dependencies are organized along the electrode and time axes, and this uniform prior exposes each token to many irrelevant interactions. We introduce Adaptive Anisotropic Attention (AAA), which splits attention into two paths: a temporal path, where each token attends to the tokens of its own electrode across time, and a spatial path, where it attends to the tokens of the other electrodes at the same time step. A small gate predicts, for every token, a convex combination of the two path outputs: two non-negative weights that sum to one. On six EEG downstream tasks, the resulting model, AXON (AXis-factorized Operator Network), improves mean balanced accuracy over a dense baseline under both linear probing and full fine-tuning. We show that both paths (temporal and spatial) are necessary and that the weighted sum beats a hard choice of one path; most of the benefit comes from the gate learning a different temporal/spatial balance at each layer of the network. Controlled audio spectrogram experiments show that axis factorization transfers beyond EEG. These results suggest that aligning attention with the natural axes of structured signals provides a useful inductive bias.

Despite strong performance on held-out electroencephalography (EEG) data, seizure detectors may fail under real-world acquisition variability, artifacts, and adversarial inputs. We introduce RobustSeiz, an open-source, model-agnostic framework that provides a standardized, reproducible protocol for stress-testing and comparing seizure detectors under controlled, clinically motivated distribution shifts before deployment. We standardize four public scalp-EEG corpora (CHB-MIT, TUSZ, Siena, and SeizeIT1) into BIDS-EEG trees and evaluate subject-independent detectors on held-out splits. Environment, noise, and adversarial transforms are swept over predefined hyperparameter grids. Each run reports sample- and event-level sensitivity, precision, F1, false positives per 24 h, Lead and Lag onset timing, and Monte Carlo dropout predictive agreement. RobustSeiz includes a Dockerized GPU pipeline, experiment registry, and full-evaluation and research-subset modes. We demonstrate the framework with a contemporary seizure detector on TUSZ across the complete implemented shift grid; an AWGN analysis illustrates how perturbation severity changes detection quality, onset timing, and predictive agreement. RobustSeiz provides a shared benchmarking standard for evaluating seizure-detector robustness under realistic clinical stressors, extending pre-deployment assessment beyond clean-data accuracy.

The ambition of the 2025 PNPL competition (Landau et al., 2025) was to launch a multi-year curriculum for non-invasive speech decoding. Designed to progress from foundational tasks toward the linguistic complexity required for a practical brain-computer interface (BCI), it set the stage with speech detection and phoneme classification tasks. Winning submissions reached F1-macro scores of 95.6% and 73.6% on the respective tasks (Elvers et al., 2026), highly significant advances. This success was built on the LibriBrain dataset (Özdogan et al., 2025), the largest within-subject MEG dataset recorded at the time with ${\sim}50$ hours of data for one subject. However, while within-subject scale drives strong decoding performance, a practical BCI must generalise to new users from minutes of data, not hours. The 2026 PNPL competition responds to this challenge with LibriBrain100 (Mantegna et al., 2026), an extended LibriBrain dataset with 32 additional subjects (${\sim}40$ minutes each) plus even more within-subject data (${\sim}80$ hours). Advancing the curriculum of tasks to focus on word classification, two complementary tracks are presented in this competition: the Deep track targets within-subject word classification at scale, aiming at the best possible performance; the Broad track targets cross-subject generalisation, progressively reducing the amount of subject-specific fine-tuning data from ${\sim}40$ to ${\sim}20$ to ${\sim}10$ minutes, a duration that falls within a clinically feasible range and brings us a step closer to a non-invasive BCI capable of restoring communication to people living with profound paralysis.

Electroencephalography (EEG) is a non-invasive technique for measuring neural activity and has been widely used in neuroscience applications. Recent advances in EEG foundation models have enabled strong performance across diverse neural decoding tasks. However, no single foundation model consistently performs best across datasets or individual EEG instances, while instance-level model selection remains largely unexplored. To address this limitation, we formulate EEG foundation model selection as an instance-level Algorithm Selection (AS) problem. We propose \textbf{EEG-AS}, an instance-level algorithm selection framework that characterizes each EEG instance using inference-available latent EEG embeddings, handcrafted neurophysiological features, and an anchor foundation model. During training, EEG-AS learns to reconstruct unavailable foundation-model behaviors from privileged prediction tokens conditioned on an anchor foundation model, while during inference it estimates these behaviors without executing the entire model portfolio, enabling efficient selection from seven EEG foundation models. Experiments on seven public EEG benchmarks demonstrate that EEG-AS substantially narrows the gap between the Single Best Solver (SBS) and the oracle upper bound for each instance. These results highlight the effectiveness of instance-level AS for adaptive deployment of EEG foundation models.

Probing studies have established that syntactic information is decodable in early and middle transformer layers, but what happens to that information in later layers remains poorly understood. We apply a cross-layer generalisation analysis to three Greek-tuned large language models evaluated on tightly controlled minimal pairs: object-relative constructions in Modern Greek, where canonical (Subject-Verb-Object; SVO) and non-canonical (Verb-Subject-Object; VSO) orders differ only in within-clause word order, while preserving propositional meaning. When a probe trained on late layers (20-31) is tested on each early layer individually, it produces below-chance transfer (cluster-corrected, p<0.01), classifying 99.3% of non-canonical sentences as canonical. Probe coefficients reverse sign around layer 22, indicating a directional recoding toward the canonical form rather than simple information loss. These findings characterise a representational format change in late transformer layers that goes beyond the well-established decline in syntactic decodability, and they generate a directly testable prediction for human EEG and MEG decoding studies using the same stimuli. Code and stimuli are publicly available on OSF.

Wearable EEG systems may expose sensitive information beyond their intended health function, creating substantial risks to neuroprivacy. In this work, we show that commonly used EEG features can reveal participant identity and demographic attributes in addition to supporting the intended cognitive task. Wearable EEG is increasingly being explored for cognitive monitoring, neurological assessment, and longitudinal digital-health applications, yet many systems assume that transmitting compact spectral or spatial features instead of raw EEG provides sufficient privacy protection. Using EEGMAT as a motivating case study, we find that compact EEG features achieve a balanced accuracy of 0.788 for cognitive-state classification while enabling gender, age, and subject-identity inference with balanced accuracies of 0.858, 0.789, and 0.692, respectively. We further show that privacy-aware representation learning preserves task performance at 0.781 while reducing these inference accuracies to 0.563, 0.467, and 0.206. These findings motivate purpose-limited representations and explicit privacy auditing in wearable neurohealth systems.

Motor imagery (MI) electroencephalography (EEG) decoding could support post-stroke rehabilitation, but models developed on healthy cohorts may not transfer reliably to pathological EEG. We evaluated whether Low-Rank Adaptation (LoRA) can efficiently adapt three pretrained EEG foundation models (i.e., LaBraM-base, REVE-base, and REVE-large) for binary left- versus right-hand MI decoding. Frozen-backbone head-only baselines and LoRA adaptation were evaluated using subject-wise five-fold cross-validation on the PhysioNet EEG Motor Movement/Imagery Dataset and a binary subset of the UET175 dataset comprising 30 stroke participants. On EEGMMIDB, LoRA increased accuracy to 0.822 for LaBraM-base and 0.957 for REVE-base. On UET175, all head-only models performed near chance. With LoRA, LaBraM-base remained near chance (0.499$\pm$0.009), whereas REVE-base reached 0.847$\pm$0.194 and outperformed REVE-large (0.806$\pm$0.178), indicating that increased model capacity alone did not improve stroke-domain adaptation. The strongest stroke configuration, REVE-base LoRA, was further evaluated using within-cohort leave-one-subject-out cross-validation (LOOCV), showing 0.952 mean accuracy, but subject-wise accuracy ranged from 0.586 to 1.000, revealing a small low-performing tail. Zero-shot transfer from EEGMMIDB to UET175 remained near chance (0.464$\pm$0.072). These findings show that healthy-benchmark performance does not ensure transfer to stroke EEG. Translation of EEG foundation models to pseudo-online or real-time rehabilitation BCIs should therefore include target-domain adaptation and subject-level assessment of temporal informativeness, spatial sensitivity, and physiological discriminability.

We present OLIVE, a framework for adapting a foundation model to provide real-time assistance in temporally demanding, high-stakes, and dynamic tasks. We show that passive EEG, fused online with behavioral evidence, can meaningfully extend the number of targets users detect and engage beyond their unaided action bandwidth. OLIVE learns from both explicit behavioral signals (the targets the user shoots down in an XR first-person shooter game) and implicit physiological signals (fixation-locked EEG) to provide timely guidance, continuously adapting a frozen vision-language model's inference on which items are task-relevant by jointly estimating per-source reliability without manual labels or offline training. Through three user studies, including two live deployments of an assistive agent driven by OLIVE in XR, we show that OLIVE Pareto-dominates prior test-time adaptation frameworks, achieving the highest convergence rate at comparable convergence speed. Combining implicit physiological and explicit behavioral signals, the OLIVE agent produces the largest and most reliable within-session improvement to a user's ability to detect and engage targets, largely independent of the individual's skill. When the target switches silently, the agent that uses both behavioral and physiological signals reconverges significantly faster than the behavior-only agent (1.27 times faster on average, p = .008), restoring trustworthy guidance at the moment the task changes, precisely when reliable assistance matters most.

Dexterous human-machine interaction requires intuitive and expressive interfaces that can be efficiently deployed on constrained edge devices. Flexible material-based neuromotor interfaces hold considerable promise, as they decode human movement intention into natural control. Although emerging flexible electronic skins enable wearable high-fidelity data acquisition, practical deployment inevitably involves trade-offs between computational resources and portability. We present a data-centric paradigm where physiological features yield fundamental separability, providing sufficient discriminative cues for recognition. A wireless, high-bandwidth system developed for collecting various electrophysiological signals, when integrated with muscle-specific electrodes, forms a surface electromyography-based interface. Exploiting highly separable data, a 2,210-parameter model achieves 94.36% accuracy across 34 gestures and can be rapidly deployed on edge devices, establishing a new thousand-parameter benchmark for dexterous decoding. The underlying data-algorithm interactions in the data-centric paradigm are further clarified, demonstrating its feasibility in real-world scenarios. This study provides a principled and validated pathway for practical deployment of reliable neuromotor interfaces.

Electroencephalography (EEG) is a promising, non-invasive, and cost-effective modality for Alzheimer's disease (AD) detection, but deep learning methods are limited by small and imbalanced clinical datasets. Generative augmentation offers a solution, yet existing approaches rely on inefficient class-specific models or fail to capture complex spatial and temporal brain dynamics. To address this, we propose GraM-Diff, a unified classifier-guided Graph-Mamba diffusion framework for EEG synthesis. It embeds Graph Convolutional Networks within a diffusion U-Net to model inter-electrode connectivity and Bidirectional Mamba state-space blocks for linear-complexity long-range temporal modeling. Latent-space classifier guidance lets a single model generate both healthy and pathological EEG within a shared representation, avoiding fragmented per-cohort pipelines. Across four EEG-based AD benchmarks, synthetic augmentation improves classification, yields superior Context-FID and correlation scores over strong generative baselines, and enhances robustness in data-scarce settings.

Motor imagery (MI) brain--computer interfaces (BCIs) have emerged as a promising approach for establishing flexible communication pathways between the human brain and external devices , particularly for individuals affected by stroke or neurodegenerative disorders. Reliable decoding of motor-imagery electroencephalography (MI-EEG) remains challenging because EEG recordings contain substantial noise and exhibit complex, weakly informative relationships with the underlying brain activity. Although deep learning provides an effective means of learning representations directly from EEG signals, its application to MI-EEG feature learning remains comparatively limited. This study introduces a hybrid deep-learning architecture that integrates a convolutional neural network (CNN) with a bidirectional long short-term memory (bi-LSTM) network. The CNN is used to learn high-level spatial and temporal representations directly from raw MI-EEG recordings, whereas the bi-LSTM models temporal dependencies and relationships among the extracted features. The proposed approach is evaluated using both a publicly available dataset and a privately acquired dataset obtained with an EEG acquisition system. The experimental results indicate that the CNN&bi-LSTM architecture provides robust performance for both two- and three-class motor-imagery classification and demonstrates promising subject-independent decoding capability across the evaluated methods.

Electroencephalography (EEG) decoding models often generalize poorly across datasets and subjects due to domain shifts in acquisition protocols and individual neurophysiology. We propose EEG-PRIME, a two-stage EEG foundation model for cross-dataset multi-task decoding. EEG-PRIME combines masked pretraining with prototype-aligned instruction tuning to enable instruction-aware and subject-invariant decoding across diverse BCI paradigms. During pretraining, an EEG encoder learns transferable representations through masked reconstruction with frequency-cutoff spectral augmentation. During instruction tuning, EEG-PRIME incorporates task-semantic, dataset-specific, and subject-invariant conditioning. The resulting conditioning signal modulates the Q-Former through Layer-wise Query Modulation, while frozen text embeddings of class labels serve as prototypes for cosine-similarity-based prediction across heterogeneous label spaces. Experiments on sixteen datasets covering motor imagery, emotion recognition, ADHD detection, covert speech, and mental workload show consistent improvements over state-of-the-art baselines and prior EEG foundation models under cross-subject settings. On two additional held-out datasets, EEG-PRIME achieves balanced accuracy comparable to within-session calibration models without target-domain optimization, calibration, or linear probing, demonstrating promising zero-shot transfer capability.

Sleep stage classification is important for the diagnosis and management of sleep disorders, yet most automatic staging studies evaluate models against a single reference hypnogram despite known inter-scorer variability. This study investigates whether multi-scored datasets can be used to construct more reliable reference labels from the collective behavior of multiple experts. We use the publicly available DOD-H and DOD-O datasets. EEG (C3-M2) and chin EMG signals were segmented into 30-s epochs, and 30 features were extracted from each modality, yielding 60 features for EEG+EMG. We propose a learning-based hypnogram (LBH) that models the stage-specific behavior of each scorer using confusion matrices derived from machine-learning models. After column normalization, these matrices estimate the probability of each true sleep stage given each scorer's label; probabilities are aggregated across scorers to assign the final label for each epoch. LBH was evaluated with random forest, support vector machine, and multilayer perceptron classifiers under EEG-only and EEG+EMG settings, and compared with the dataset hypnogram (DH) and best-scorer hypnogram (BSH). LBH consistently improved overall performance. The best results were obtained with random forest and EEG+EMG, reaching 86.07% accuracy, 85.46% precision, and 85.29% F1-score on DOD-H, and 86.04% accuracy, 85.21% precision, and 84.70% F1-score on DOD-O. These findings suggest that personalized scorer modeling can improve reference hypnogram construction without discarding information from individual experts.

Identifying individual learning styles optimizes pedagogical efficacy. While traditional questionnaires are structured, behavioral tracking methods require prolonged interaction log accumulation. To overcome these temporal constraints, this paper proposes an objective Electroencephalography (EEG) approach evaluating Phase Locking Value (PLV) connectivity against localized features across the Active-Reflective (AR) and Verbal-Visual (VV) Felder-Silverman dimensions. EEG signals were recorded from 28 participants during Raven's Advanced Progressive Matrices tasks. Support Vector Machine classification used Leave-One-Subject-Out Cross-Validation (LOSO-CV) alongside a 70:30 intra-subject split. The VV dimension achieved 70.00% subject-level accuracy driven by distinct fronto-occipital polarization. Conversely, the AR dimension yielded lower cross-subject generalizability (55.56%) due to overlapping executive networks and a "Systematic Neural Inversion" phenomenon, where stable individual connectivity signatures operated diametrically opposed to global boundaries (up to 20-0 voting margins). Ultimately, these outcomes demonstrate that rigid "one-size-fits-all" classifiers are bounded by biological diversity, emphasizing the need for future adaptive feature transformation techniques to bridge the cross-subject generalization gap.

Recent advances in EEG foundation models have demonstrated the potential of large-scale pretraining to enable generalizable neural decoding across subjects, recording environments, and datasets. However, dominant pretraining paradigms face key challenges: masked autoencoding tends to prioritize low-level signal reconstruction over task-relevant semantics, while autoregressive modeling creates a mismatch between continuous neural dynamics and discrete token spaces. To address these challenges, new strategies are needed to effectively align continuous EEG representations with natural-language semantics and enable their integration with large language models. Accordingly, we propose Brain Latent Predictive Model (BLPM), an EEG-language foundation model that reformulates heterogeneous EEG decoding tasks as a continuous semantic embedding prediction problem. BLPM introduces a Continuous EEG Latent Predictive (CELP) encoder that learns transferable representations through latent target prediction. Building on these representations, a Multi-Query Semantic Decomposition (MQSD) module extracts task-relevant information and aligns continuous EEG representations with textual semantics within a shared latent space according to their semantic relationships. Experiments across multiple benchmarks demonstrate consistent generalization performance across diverse tasks, establishing continuous latent semantic prediction as an effective paradigm for EEG-language foundation models.

Mixed emotions represent a clinically relevant but still underexplored target for automatic emotion recognition. EEG provides millisecond-level access to neural activity, yet most EEG pipelines analyze the signal through a single temporal window, thereby fixing the temporal structure available to the model. This study introduces a multi-scale temporal framework for EEG-based emotion recognition. The EEG waveform is decomposed into windows of one or several durations, processed by a shared attention-based encoder, and integrated through a dynamic fusion module that assigns sample-specific weights across temporal scales. The framework is evaluated under a subject-independent protocol in binary and three-class settings, with the three-class task including the mixed affective category. The best results are 65.22% for the two-class task and 45.43% for the three-class task. Both are obtained with three-scale dynamic-fusion configurations and remain substantially above the full-signal baseline. The best-performing temporal scales differ between the two tasks. Dynamic fusion outperforms concatenation in the highest-scoring two-class configuration and slightly exceeds it in the highest-scoring three-class configuration, although these multi-scale settings require substantially more computation than the full-signal baseline.

This work investigates whether Electroencephalograph (EEG) foundation models (EFMs) can be made faster and locally deployable without sacrificing accuracy. EEG foundation models are a major trend, offering strong general-purpose representations. However, their computational burden grows quadratically with input length, hindering deployment on resource-constrained scenario, particularly for real-time clinical monitoring. EEG's low SNR further suggests many of these tokens are redundant and compressible with little accuracy cost. We propose ZIPBrain, a novel redundancy-aware EEG token pooling module that leverages this low-SNR characteristic to reduce token count. Given a token sequence, ZIPBrain partitions tokens into redundant and unique groups, then merges each redundant token with its most similar counterpart in the unique group. Furthermore, ZIPBrain serves as a training-free, plug-and-play module that seamlessly integrates into standard Transformer encoders with negligible computational overhead. Extensive experiments across multiple EEG foundation models show ZIPBrain's strong versatility, achieving 1.3%-10.5% average improvement over baselines, while reducing wall-clock inference time by 32.7% (up to 41.8% with CUDA Graph) compared to the original EEG foundation models.

Electroencephalography (EEG) based Brain-Computer Interfaces (BCIs) often require unsupervised domain adaptation (UDA) to generalize across subjects and sessions. While Riemannian alignment methods like the Riemannian Centering Transformation (RCT) are effective for handling covariate shifts, they implicitly assume balanced class priors. However, in realistic online BCI scenarios, the label distributions vary dynamically (label shift), causing standard alignment techniques to geometrically misalign the target data distributions. In this work, we propose OSPDIM (Online SPD manifold information maximization), a source-free online UDA framework designed to address label shifts on the Riemannian manifold. OSPDIM introduces a manifold-constrained bias parameter into the tangent space mapping, which is optimized via information maximization to correct the geometric skew caused by imbalanced data streams. Unlike offline methods relying on global batch statistics, OSPDIM estimates and corrects geometric bias on-the-fly. Simulations on 2D SPD matrices visually demonstrate that OSPDIM successfully rectifies the misalignment where standard centering fails. Extensive experiments on multiple motor imagery datasets show that OSPDIM significantly outperforms standard Riemannian baselines, particularly in challenging online adaptation scenarios with severe class imbalance, offering a robust solution for practical, plug-and-play BCI systems.

Decoding continuous motor trajectories from neural activity is essential for developing practical brain-computer interfaces (BCIs). However, current neural decoders are constrained by the limited scale and heterogeneity of neural recordings. In contrast, behavioral data can be collected more readily and at substantially larger scale from humans, animals, simulations, and robotic systems. Here, we introduce NeuroPB, a framework that scales neural decoding by transferring knowledge from pretrained behavioral representations. NeuroPB first pretrains a motor encoder on large-scale motor behavior data and then aligns neural activity with the resulting behavioral representation space using a limited set of paired neural-behavioral recordings. A neural encoder and lightweight motor decoder are subsequently optimized to reconstruct continuous movement from the aligned neural representations. Across multiple macaque motor datasets, behavioral pretraining improves trajectory decoding, including an 11% $R^2$ increase on center-out and 8% on random-target compared with training the motor encoder from scratch. Notably, pretraining on robotic trajectories achieves performance comparable to pretraining on macaque trajectories, demonstrating that transferable kinematic structure is shared across biological and artificial models. Moreover, decoding performance improves as the scale and diversity of robotic pretraining data increase, when the amount of neural data is fixed. Pretraining also enhances generalization across recording sessions, subjects, and motor tasks, with only 10% calibration needed to match training from scratch. Overall, these results establish behavioral pretraining as a scalable source for neural decoding and provide a promising route toward high-performance and calibration-efficient BCIs under limited neural data.

Electroencephalography (EEG) analysis extends beyond assigning predefined labels to recordings; it requires workflows connecting natural-language instructions, signal processing, quantitative evidence, and scientific interpretation. We term this capability \emph{comprehensive EEG understanding}. Existing evaluations, however, primarily target isolated decoding tasks or system-specific demonstrations, leaving the competence of large language models (LLMs) insufficiently quantified. We introduce \benchmarkname{}, a unified benchmark for comprehensive, instruction-conditioned EEG understanding. It comprises four subsets---Foundational Analysis, Sleep Assessment, Neurocognitive Assessment, and Physiological Integration---covering 17 datasets, \numcases{} tasks, and over \numinstances{} real-data instances. Given an instruction and EEG recordings with optional physiological signals, a system must perform the analysis and produce a scientifically grounded report and, when required, artifacts. Outputs are assessed through numerical, categorical, set, sequence, semantic, and artifact validation. We evaluate \nummodels{} representative LLMs across more than 100K executions under two paradigms: autonomous code execution with CodeAct and structured agentic analysis with BrainAgent. Results vary substantially across models, subsets, difficulty levels, and execution paradigms, showing that EEG competence depends on the model and its operationalization. \benchmarkname{} provides a reproducible testbed for advancing LLM-based EEG understanding. The code and benchmark will be released soon, with evaluation results continuously updated.

Atrial fibrillation (AF) is the most common sustained cardiac arrhythmia and is associated with increased risks of stroke, heart failure, and mortality. Recent ECG foundation models offer transferable representations for automated AF detection. However, their relative effectiveness remains unclear because existing studies use different datasets, preprocessing procedures, classifiers, and validation protocols. This study presents FOUND-AF, a unified, leakage-controlled, and deployment-oriented benchmarking framework that evaluates the quality of pretrained ECG representations under identical experimental conditions. Nine publicly available foundation models from five families, including HuBERT-ECG, CLEF, ST-MEM, ECG-JEPA, and ECGFounder, were evaluated across four heterogeneous ECG datasets, namely AFDB, CinC2017, CPSC2021, and LTAFDB. All models were used as frozen feature extractors with standardized preprocessing, model-native resampling, a fixed XGBoost classifier, and recording-level grouped cross-validation. The evaluation included classification metrics, receiver operating characteristic analysis, paired recording-level bootstrap comparisons with Holm correction, embedding-space visualization, and computational efficiency profiling. The ECGFounder model consistently achieved the strongest overall performance across datasets while offering a favorable trade-off between accuracy, model size, inference time, and memory usage. FOUND-AF therefore provides a reproducible framework for selecting ECG foundation models and demonstrates that compact, clinically pretrained encoders can support robust and computationally efficient AF detection across heterogeneous acquisition settings.

Imagined handwriting offers a temporally rich paradigm for non-invasive neural decoding, yet reliable recognition across unseen participants remains difficult because scalp EEG is noisy and internally generated stroke sequences vary across individuals. The Multimodal Brain-Computer Interface Grand Challenge provides synchronized EEG and fNIRS for four-class subject-independent handwriting-trajectory classification. We propose FRED, a task-adapted system that models imagined handwriting as a multi-second motor sequence and trains a compact multi-scale temporal network on three complementary EEG frequency views. With three seeds per view, cross-band members produce substantially less-correlated errors than same-band replicas, yielding a clean nine-member ensemble accuracy of 0.8076/0.7242/0.7492 on the public/private/overall test partitions without test-set adaptation or output constraints. The submitted pipeline further incorporates transductive pseudo-label training, three EEG-Conformer members, posterior aggregation, and a paradigm-aware decoder. Because every 12-trial randomization block contains three instances of each class, the final predictions are obtained by Hungarian assignment under the known block quota. On one fixed posterior pool, independent, session-constrained, and block-constrained decoding achieve 0.7600, 0.7758, and 0.7952 overall accuracy, respectively. The complete system reaches 0.8498/0.7718/0.7952, ranking fourth on the private split. A modality audit finds fNIRS-only decoding at chance (0.2511 overall), while adding fNIRS to EEG changes accuracy by only +0.0025. These results identify frequency-diverse temporal EEG modeling and protocol-matched structured inference as the principal sources of performance in this sparse-montage EEG--fNIRS setting. The source code is available at https://github.com/XiuFan719/EEG-fNIRS-fuse-method-for-MM-challenge.

Recent studies have reported clearly identifiable dynamical changes in the high-frequency range of EEG signals recorded during specific stimuli, such as visual or auditory inputs, or in cases of brain disorders like epileptic seizures. In this study, we utilized Dynamic Mode Decomposition (DMD) to extract consistent and persistent dynamical changes in the high-frequency band from the signals of neurologically relevant EEG channels. High-frequency DMD modes were employed as features, composing a feature table. Through post-processing, a random distribution test was performed, revealing that approximately 70% of the samples exhibited consistent high-frequency dynamics within the signal of a specific channel. Furthermore, classification experiments confirmed that the PCA components of the feature table that passed the test formed a consistent pattern that distinguished the alcohol-dependent group from the control group.

Automatic sleep staging is a critical role in sleep disorder diagnosis, sleep quality assessment, and long-term health monitoring; however, existing approaches suffer poor performance on ambiguous and transition-related sleep stages, caused by inadequate modeling of fine-grained intra-epoch structures and complex cross-region spectral dependencies. Traditional epoch-level encoders commonly fail to extract subtle temporal microstructures and intra-epoch cross-region interactions, resulting in unsatisfactory recognition accuracy for hard categories such as the N1 stage. To tackle these drawbacks, we propose SwinSleepNet, a hierarchical context-aware dual-stream framework that separately optimizes intra-epoch representation learning and inter-epoch contextual modeling. Concretely, we characterize each sleep epoch from two complementary perspectives: raw time-domain EEG signal and its time-frequency transformation. The time-domain branch adopts convolutional encoders to capture fine waveform temporal details, and the time-frequency branch uses Swin Transformer to extract local spectro-temporal features, hierarchical multi-scale information and long-range spatial dependencies. The multi-branch extracted features are fused into integrated embeddings, which are optimized by a bidirectional context module to capture cross-epoch temporal dependencies for final sleep stage classification. Comprehensive experiments on Sleep-EDF-20, Sleep-EDF-78 and SHHS datasets verify that our method achieves competitive overall performance, and exhibits stronger robustness and stability on difficult N1 stages and transitional epochs. The results prove that optimized intra-epoch representation learning based on hierarchical architecture greatly benefits automatic sleep staging tasks.

Closed-loop lower-limb exoskeleton control via Electroencephalography (EEG) remains limited by motion artifacts, low signal-to-noise ratio, and binary gait formulations that fail to capture full cortical gait complexity. We propose a 2-block Brain-Computer Interface (BCI) architecture: a trainable session-specific Feature Extraction Block with real-time artifact suppression and multi-domain feature extraction, coupled with a Decoder Block built on a novel Polynomial Time-Varying Layer (PolyTVL)+LSTM for four-state gait classification (Stand, Initiate, Execute, Terminate). Ablation confirmed v01 (PolyTVL+LSTM) outperformed all variants (validation MCC: 0.435, gap: 0.187), with consistent EEG feature discriminability across ROIs and sub-bands (p<0.05). Closed-loop deployment with v01 achieved 55.3% (Rex-assisted) and 52.7% (volitional) gait initiation success, with a mean prediction time of 70.5~ms (+/-41.5), validating real-time feasibility in this pilot study.

Brain-computer interfaces (BCIs) have been widely used in motor rehabilitation, disease diagnosis, and other neural engineering scenarios. However, conventional neural signal decoding algorithms often suffer from limited generalizability and high adaptation costs, motivating recent interest in BCI foundation models. Existing approaches still struggle to jointly achieve general transferability, accurate decoding, and efficient downstream adaptation. We present STEAM, a hierarchical transfer framework that reconciles general-purpose representation learning with paradigm-specific specialization in EEG foundation models. The framework is instantiated as a dual-branch spatio-temporal encoder in which a shared soft mixture-of-experts (SSMoE) module aligns the spatial and temporal branches, allowing complementary representations to exchange information through a compact set of soft slots. Across seven downstream datasets and fourteen evaluation settings, STEAM attains the best average rank among the compared methods at a competitive inference cost measured in FLOPs. Building upon the Stage-I general initialization, the hierarchical pre-training strategy further specializes the model to a target paradigm without retraining from scratch, yielding consistent gains in paradigm-specific decoding accuracy.

Increasing EEG pretraining data scale or model capacity does not consistently improve downstream performance. We identify a persistent low-frequency bias in representations learned by diverse EEG foundation models, which remains across dataset scales, model capacities, and pretraining objectives. Our analysis links this bias to the interaction between EEG's $1/f^α$-like spectral structure and neural networks' tendency to preferentially learn low-frequency components. In masked autoencoders, the $\ell_2$ reconstruction objective further amplifies this imbalance: under comparable relative reconstruction errors, high-power low-frequency components contribute disproportionately to the loss. To address this issue, we introduce FAME, a frequency-balanced masked autoencoding framework that reconstructs time--frequency activity in predefined EEG bands from masked EEG inputs. FAME independently standardizes the reconstruction targets within each band and assigns equal weight to all band-specific losses, thereby balancing supervision across the EEG spectrum. Evaluated on 41 downstream tasks in OmniEEG-Bench, FAME learns more spectrally balanced representations and achieves state-of-the-art performance on 24 of them. These results underscore the importance of balanced spectral supervision for learning transferable EEG representations.

Achieving robust EEG-based auditory attention switch decoding (AASD) is crucial for intelligent hearing aids. However, its application is limited as EEG non-stationarity complicates sequential decision-making, and insufficient control of potential confounding factors may overestimate performance. Therefore, we propose a state-guided adaptive decision (SGAD) framework that infers attention transition states via causal state detection and dynamically modulates temporal smoothing through state-guided adaptive gating. We further introduce six hierarchical evaluation protocols to assess generalization across audio, speaker, and subject dimensions. Experimental results show that SGAD improves decoding accuracy and stability while maintaining low response latency across evaluation scenarios. Performance variations across protocols further suggest data partition-related biases. Together, these findings advance robust AASD for neuro-steered hearing applications.

Short segments of perceived speech can be retrieved from non-invasive magnetoencephalographic (MEG) recordings by deep networks trained with a CLIP-style objective against wav2vec 2.0 audio embeddings. Yet their weights do not map onto electrophysiological quantities, and it remains unclear which speech properties drive retrieval. We build on a high-performing MEG-to-audio retrieval architecture but redesign both its front end and decoder. Its spatial attention operates on a flattened sensor layout; we replace it with spherical harmonics defined on the three-dimensional MEG helmet geometry. We reduce the subject-specific representation from 270 to 25 branches, add a temporal filter to each branch to match it to a neuronal source in space and time, and make the convolutional decoder shallower. Ocular and cardiac components are removed before training to reduce the risk of stimulus-locked shortcuts. On MEG-MASC, the model reaches 39.75 +/- 0.34% Top-1 accuracy among 1005 candidates across six trained solutions, with about 20 times fewer decoder parameters. Its weights map to source space, recovering generators consistent with the speech-perception network, while left-lateralized branches carry higher-frequency rhythmic components not evident on the right. Paired MEG occlusion shows that 15 of 19 stimulus features contribute, with the largest effects for silence, sound intensity, vowels, and acoustic onsets. Random word lists behave oppositely: substituting narrative MEG into them improves retrieval, indicating that activity without narrative structure carries less recoverable information than activity during coherent speech. The wav2vec target can be reduced to about twelve learned feature dimensions without loss of accuracy, whereas strong temporal compression causes a clear loss. Together, source mapping and input interventions reveal what drives retrieval.

Automated sleep staging assigns discrete stage labels to successive time epochs throughout an overnight recording; conventionally each window spans at least 30 seconds, reflecting the minimum temporal resolution of the clinical scoring standard. Wearable photoplethysmography (PPG) has attracted sustained interest as an ambulatory alternative to laboratory-based polysomnography, which relies on electroencephalography (EEG) and other recording modalities that are impractical outside clinical environments. Yet PPG-based staging trails EEG-based methods by a substantial margin, and we argue this gap largely reflects a mismatch between signal and task. Within a stable stage, PPG's inter-stage feature differences are more subtle than those in EEG; yet at stage boundaries, PPG's principal cardiovascular features, heart rate variability and pulse morphology, shift sharply within seconds. The conventional practice of assigning one label to each 30-second epoch therefore suppresses feature that is concentrated near boundaries. We address this gap in two steps. First, we develop a label expansion pipeline based on Hidden Semi-Markov Models that converts coarse epoch labels into sec-level annotations. To assess whether these expanded labels are reliable enough for downstream supervision, we validate them on a separate expert-reviewed dataset and through an auxiliary sleep-wake task whose labels are independent of the expansion pipeline. Second, we use the resulting sec-level supervision on MESA to improve conventional four-class epoch-level staging across four architecturally diverse baselines by 3.7--5.7,pp in accuracy against the original epoch labels, with supplementary zero-shot evaluation on CFS showing that the transfer benefit persists under cohort and annotation-protocol shift.

Fragile X Syndrome (FXS) is a neurodevelopmental disorder caused by reduced expression of fragile X mental retardation protein (FMRP), leading to disrupted synaptic plasticity, cortical hyperexcitability, and impaired network synchronization. Electroencephalography (EEG) provides a noninvasive window into these mechanisms and consistently reveals abnormalities in alpha (8 to 12 Hz) and gamma (30 to 100 Hz) oscillations that relate to inhibitory control, sensory processing, and cognition. This paper proposes a multi representation deep learning framework for automated characterization of FXS EEG phenotypes by integrating convolutional neural networks (CNNs), long short-term memory (LSTM) networks, and recurrence plot (RP) analysis. Band limited EEG signals are decomposed into alpha and gamma components and transformed into complementary representations, including temporal feature sequences, time frequency maps, and RP images encoding the nonlinear recurrence structure. CNN modules learn discriminative spatial-spectral and dynamical textures from image based representations, while LSTM modules model temporal modulation of oscillatory activity; a hybrid CNN LSTM architecture jointly captures spatial, temporal, and nonlinear dependencies. Subject-independent evaluation demonstrates that the hybrid model outperforms single modality baselines, with gamma features providing strong discriminative power and alpha gamma integration yielding the best overall performance. These findings support deep learning with nonlinear representations as a scalable approach for EEG biomarker development in FXS, with potential utility for diagnosis, stratification, and treatment monitoring in translational settings.

Decoders of anesthetic state from cortical activity fail across drug classes, most notoriously ketamine, but reported accuracy cannot say whether the neural representation or only the decision threshold has failed; we separate the two in a controlled preparation with ground-truth labels. We decoded awake versus anesthetized from mouse electrocorticography (the 250-Hz-bandlimited local field potential, sampled at 1875 Hz) under leave-one-anesthetic-out evaluation across five mechanistically distinct anesthetics (isoflurane, dexmedetomidine, ketamine, propofol, and midazolam), comparing a spatially blind band-power decoder, covariance/Riemannian representations, and Riemannian domain adaptation, with all statistics at the session level and mouse-level cluster bootstrapping for the ketamine fold. The representation transfers: band-power ranks awake versus anesthetized at a session AUROC of at least 0.96 on every held-out drug, ketamine included (0.980, cluster confidence interval 0.821 to 1.000). The failure is confined to the threshold: across three representations the ketamine ranking is near-invariant while its balanced accuracy swings from chance to high, and a permutation test is significant for ranking (p = 0.0025) but not for fixed-threshold accuracy (p = 0.3795). Riemannian domain adaptation is net-negative. A causal, label-free threshold anchored to the subject's own pre-induction baseline fixes ketamine (balanced accuracy 0.50 to 0.85) and dominates domain adaptation. Because the ketamine test sessions come from three mice that also contribute training drugs, this is within-subject cross-drug transfer; we do not claim population-level transfer across subjects. In cross-drug state decoding the actionable failure is calibration, not representation.

Electroencephalography (EEG) foundation models aim to learn reusable representations from large-scale unlabeled recordings. A common pretraining strategy is masked waveform reconstruction, but applying supervision directly to noisy EEG may encourage models to recover predictable background activity, acquisition effects, and artifacts rather than neural structure that transfers across tasks. This raises a central question: what should an EEG foundation model predict to learn transferable representations? We introduce EEG-JEPA a structured latent-prediction framework for EEG foundation modeling. Rather than reconstructing masked voltage samples, a masked context encoder and predictor infer contextual latent states produced by an exponential-moving-average target encoder that observes the complete input. EEG-JEPA organizes target design along three complementary dimensions: target content specifies what representation is predicted, target support specifies where prediction occurs over structured electrode--time regions through Neurotopology-Aware Multi-scale Electrode-Temporal Masking (N-MET), and target depth specifies at which encoder layers supervision is applied. Together, these designs shift EEG pretraining from recovering missing measurements to inferring latent states from structured electrode--time context. We evaluate EEG-JEPA through controlled objective comparisons, frozen multitask transfer, and full fine-tuning. Under the same backbone, pretraining corpus, and training duration, EEG-JEPA improves the 14-task frozen macro balanced accuracy from 40.49% to 50.42% over CBraMod-style masked waveform reconstruction. Multi-source continuation further raises this result to 52.94%, the highest average among the EEG foundation models evaluated on EEG-FM-Bench. Under protocol-matched full fine-tuning, EEG-JEPA also improves the nine-task average balanced accuracy from 68.98% to 70.65%.

Federated learning enables multiple institutions to collaboratively train a shared model without exchanging their raw data. However, individual model updates are data-dependent and may reveal information about clients' local training data. This paper presents a privacy-preserving federated learning framework for clinical EEG data that uses masking-based secure aggregation as its core protection mechanism. The framework combines graph-based communication, threshold secret sharing, dropout recovery, local update clipping, an optional Bloom filter-based privacy-preserving record-linkage initialization module, and auxiliary-notary-based verifiability. It supports semi-honest and malicious aggregation settings and is implemented using the Flower federated learning framework. The secure aggregation variants are evaluated in a simulated cross-silo healthcare setting using TUH EEG-derived data under different client configurations. Under the stated assumptions, the secure variants hide individual updates from the aggregation server. The results show that these variants remain compatible with federated model training, although malicious-setting safeguards and lightweight consistency-checking mechanisms introduce additional computation, communication, and round-duration overhead. Among the proposed secure configurations, the base semi-honest variant incurs the lowest overhead; the malicious-server variants add protocol-consistency and authenticity safeguards, and the auxiliary-notary variants add lightweight aggregate-consistency checking.

Foundation models offer a promising paradigm for Electroencephalography (EEG) analysis, leveraging generalizable representations from vast unlabeled datasets. Yet, Transformer-based architectures face a critical bottleneck: global attention mechanisms couple the attention memory state to the signal duration, causing memory overflow during continuous monitoring. To address this, we introduce S-CEReBrO (Streaming CEReBrO), an evolution of the CEReBrO architecture designed for continuous monitoring. Our novel Windowed Alternating Attention mechanism factorizes attention computation into fixed-size spatiotemporal windows, so that under streaming, only the active window remains resident and the attention state is bounded independently of signal duration. Empirical scaling analysis shows that windowed alternating attention can process signals 100X longer than full self-attention and 3X longer than low-rank linear attention. Compared to low-rank linear attention on long contexts, windowed alternating attention requires 55% of the memory while increasing inference throughput by 2.1X. Pre-trained on >25,000 hours of recordings from >12,000 subjects, S-CEReBrO achieves state-of-the-art performance on 7 of 11 downstream tasks, with up to 60% fewer parameters. This work represents a significant step toward the realization of efficient, generalizable, and continuous EEG monitoring. An accompanying code repository is available. An accompanying code repository is available.

As populations age, cognitive decline from mild cognitive impairment (MCI) to dementia is a defining health challenge of the coming decades, yet routine assessment often misses its earliest signs. This article critically synthesizes recent technological advances for detecting and managing cognitive impairment in older adults, spanning neurophysiological signals (chiefly electroencephalography, EEG), structural and molecular neuroimaging (MRI and amyloid/tau PET), blood-based biomarkers, and digital markers, integrated through artificial intelligence (AI), machine learning (ML), and deep learning (DL). Beyond summarizing, it contributes a cross-disciplinary taxonomy, a methodological-rigor lens foregrounding subject- and site-independent validation, an integrative early-detection framework linking tiered screening to intervention, and comparison tables of detection methods, interventions, and risk and protective factors. EEG markers (alpha/theta changes, P300 latency) and deep models (CNNs, LSTM/BiLSTM, transformers, self-supervised EEG foundation models) report strong accuracy, yet many rest on small, single-site datasets unlikely to survive rigorous external validation. Elsewhere, gains are tangible: plasma p-tau217 has reached clinical utility, with the first blood test cleared to aid Alzheimer's diagnosis in 2025; anti-amyloid therapies (lecanemab, donanemab) are approved despite modest, contested benefits; and multidomain lifestyle prevention has matured. Wearable, remote, speech, and virtual-reality tools enable continuous, ecologically valid monitoring, and multimodal fusion improves sensitivity and specificity. Barriers remain: standardization, explainability, data privacy, and equitable, externally validated deployment. The field's near-term promise lies in trustworthy, multimodal, longitudinally validated systems linking early detection to actionable, personalized care.

We introduce ZUNA1.1, a 380M-parameter diffusion autoencoder for flexible EEG signal reconstruction. ZUNA1.1 is capable of reconstructing variable length sequences of up to 30s, with an arbitrary number of EEG channels at arbitrary scalp locations, and can reconstruct arbitrary temporal intervals within channels in addition to reconstructing entire channels. We demonstrate that ZUNA1.1 performs at least on par with our earlier ZUNA1 model, while being far more flexible and capable of handling a wide range of reconstruction tasks. ZUNA1.1 continues to substantially outperform standard EEG denoising and reconstruction methods such as spherical spline interpolation, which is ubiquitously deployed in the MNE package. The ZUNA1.1 model is released open source under the permissive Apache 2.0 license.

Most existing seizure detection algorithms require extensive pre-processing of the data and rely on heuristic or currently unexplainable machine learning approaches. These approaches often struggle with balancing detection sensitivity and specificity in the presence of variable seizure morphologies, interictal epileptiform discharges, and artefacts. Here, we consider an alternative approach: our seizure detection algorithm, which is based on the concept of critical transitions and overcomes the aforementioned limitations. Specifically, we perform a receiver-operating-characteristic analysis to quantify the performance of our algorithm in terms of its agreement with expert annotations of seizure onset and offset times in the voltage recordings of seizure activity in epileptic rodents with different seizure morphologies. We demonstrate how performance depends on algorithm parameters and varies across different rodent recording sessions. We determine the optimal set of algorithm parameters for each recording session, with near expert-level performance achieved in most cases. Finally, we derive a single general set of algorithm parameters applicable across all recording sessions. The algorithm maintains its high performance in this general setting, demonstrating its versatility, robustness across varying seizure morphologies, and potential to complement machine learning algorithms.

EEG-based disease diagnosis requires one prediction per subject, yet common pipelines segment recordings into short instances, inherit the subject label for every instance, and train instance-level classifiers. This assumes that all instances provide equally reliable diagnostic evidence. Multiple instance learning (MIL) avoids inherited labels by treating each subject as a bag. However, EEG datasets contain far fewer subjects than instances, which can limit the quality of the representations learned by end-to-end MIL. We propose BridgeMIL, a two-stage framework that decouples instance representation learning from subject-level supervision. Stage 1 pretrains the encoder without inherited instance labels by aligning temporally nearby windows and independently sampled within-subject sub-bags. Variance and covariance regularization prevent collapse and reduce redundancy without negative pairs. Stage 2 transfers the encoder to an attention-based MIL aggregator, applies supervision only to subject predictions, and limits representation drift through feature retention. Across three EEG disease datasets and five representative backbones, BridgeMIL attains the highest mean accuracy in 14 of 15 dataset-backbone settings and an overall mean accuracy of 76.57%, 4.28 percentage points higher than the strongest baseline. Further analyses reveal substantial variation in inherited-label reliability across instances, greater performance sensitivity to subject scarcity than to instance scarcity, and a more structured representation space with distinct subject-wise clusters and improved separation between diagnostic classes. Together, these findings underscore the importance of aligning supervision with the subject-level prediction objective while learning from abundant EEG instances without assigning disease labels to individual instances.

EEG foundation models pretrained on thousands of hours have shown large gains over task-specific networks for motor imagery, seizure detection, sleep staging, and emotion recognition, but their transfer to speech decoding - arguably the most demanding non-invasive BCI application - remains untested. We present the first systematic benchmark of EEG foundation models against strong convolutional baselines for speech decoding, using two corpora: UGR-MINDVOICE (overt and covert Iberian Spanish) and BCI Competition 2020 Track 3 (imagined speech). We compare two foundation models (LaBraM, EEGMamba) against three established baselines (EEGNet, ShallowFBCSPNet, EEGConformer) under a unified preprocessing and fine-tuning protocol. Large-scale EEG pretraining yields no consistent advantage over a 16K-parameter CNN on speech tasks, indicating that current general-purpose EEG pretraining does not yet transfer to speech production and motivating speech-specific foundation models.