Heterogeneous GNNs

GNN: Graph Neural Network

Momentum

2 papers in the last four weeks, against 1 the four weeks before. 0.0% of all new papers.

Jul 13Week of Sep 28

Latest papers 47

Oct 6, 2026cs.AI

Shared-Roadmap Generation and Evaluator for Multi-Agent Path Planning Using Heterogeneous Graph Neural Network

Multi-agent path planning (MAPP) in continuous environments often relies on roadmaps to balance safety and search efficiency. However, traditional roadmap generation methods, such as lattice grids or standard sampling-based approaches, frequently face a trade-off between graph density and the likelihood of finding feasible, high-quality solutions. In this paper, we propose a scalable heterogeneous Graph Neural Network (GNN) framework for the automated generation and evaluation of shared multi-agent roadmaps. Our model covers the representation of waypoints, agent locations, and task locations as distinct nodes in a heterogeneous graph, allowing it to reason over global connectivity and inter-agent interactions. By training on occupation density maps aggregated and collected from expert solver trajectories, the GNN learns to identify critical points of interest and prune redundant nodes and edges. This process produces a compact, coordination-aware roadmap that is invariant to task permutations and is reusable for multi-agent pick and delivery tasks. Experimental results demonstrate that our framework can reduce planning effort and can potentially find better solutions, reaching at least 40% reduction in runtime and in graph size for dense roadmaps.
Sep 28, 2026cs.LG

Temporal Heterogeneous Graph Pretraining for Relational Deep Learning

Relational deep learning models database rows and foreign-key links as a heterogeneous graph for prediction from record attributes and relational context. These graphs contain two distinct temporal signals: record age changes with the prediction cutoff, while intervals between observed records remain fixed. Prior work often treats time as a single signal or studies temporal representation and pretraining separately. We investigate how explicitly encoding both signals affects temporal pretraining for downstream tasks. Our framework combines Multi-scale Time Encoding, which captures record age using learnable time scales and type-specific projections, with Rotary Time Encoding, which represents signed inter-record intervals through rotary transformations during graph propagation. We pair these encodings with three self-supervised objectives: historical relation recovery, horizon-aware future relation activity prediction, and temporal subgraph contrast. All inputs respect their observation cutoffs. Pretraining proceeds in two stages: subgraph contrast first learns neighborhood representations, followed by refinement through either relation recovery or future activity prediction. We evaluate on five RelBench datasets across 11 classification and regression tasks using heterogeneous GNN and graph Transformer backbones. With both encodings, the best evaluated staged schedules improve over supervised training with the same encodings by 3.02% and 1.06% on the two backbones, respectively, and over controls without pretraining or either encoding by 3.24% and 2.37%.
Sep 15, 2026eess.SY

Unified Heterogeneous Graph Neural Network solver for Power Flow, Optimal Power Flow and State Estimation

Power Flow (PF), Optimal Power Flow (OPF), and State Estimation (SE) are fundamental problems in power system analysis, but solving them is computationally expensive. Graph Neural Networks (GNNs) have been proposed as fast surrogates, yet existing solvers are trained for a single problem at a time, producing narrow models that must be rebuilt for each new task. We propose a more general approach: a single Heterogeneous Residual Gated Graph Convolutional Network that solves all three problems with one shared backbone. Rather than learning one mapping, the model learns a reusable representation of how the network behaves, from which PF, OPF, and SE can each be estimated. Trained jointly on the three problems across diverse topologies and loading conditions, and evaluated on the IEEE 14-bus and 118-bus systems, the shared model matches the accuracy of task-specific GNN solvers and stays robust on unseen loading levels and topologies. These results show that a single model can capture the basic operation of a power network and serve several analysis tasks at once, a first step toward a foundation model for power systems.
Aug 13, 2026cs.LG

EGRL: Edge generation-guided relation-aware learning for RNA-protein interaction prediction

RNA-Protein Interactions (RPIs) are critical for regulating cellular functions. While traditional wet-lab experiments for RPI detection are costly and time-consuming, Deep Learning (DL) methods provide an efficient computational alternative for RPI Prediction (RPIP). In particular, Graph Neural Networks (GNNs) are promising, as they naturally model RPI networks. However, existing GNN-based methods often rely on homogeneous graphs or predefined meta-paths, which limit their ability to handle data sparsity and to generalize to cold-start scenarios involving unknown molecules. To address these limitations, we propose Edge Generation-guided Relation-aware Learning (EGRL), a novel framework with several key components: implicit meta-path learning to capture relational semantics without handcrafted paths; a multi-relation-aware attention mechanism for adaptive fusion of interaction patterns; a graph generator that predicts potential ("soft") edges to support cold-start nodes; and a multi-feature fusion predictor for final interaction scoring. EGRL is jointly trained with a primary task loss and an auxiliary generator loss. Comprehensive evaluations on four benchmark datasets demonstrate that EGRL achieves competitive overall performance. More importantly, it exhibits superior generalization in cold-start settings, achieving an Area Under the Receiver Operating Characteristic curve (AUROC) of 0.867 and an Area Under the Precision-Recall curve (AUPR) of 0.861 on unknown molecules, corresponding to improvements of 8.6% in AUROC and 5.0% in AUPR over prior state-of-the-art methods. The code will be released soon.
Aug 5, 2026cs.LG

MiGHT-EHR: A Multi-task Graph Transformer for Heterogeneous Temporal Electronic Health Records

Learning from Electronic Health Records (EHRs) has gained significant attention due to its potential to improve clinical prediction. However, effective learning remains challenging because EHRs encode heterogeneous, temporally ordered clinical interactions. In particular, EHRs contain: (i) heterogeneous clinical entities, including patients, visits, diagnoses, prescriptions, and procedures, together with their heterogeneous interactions, (ii) longitudinal patient trajectories across hospital visits and (iii) shared statistical dependencies across related clinical prediction tasks. Existing EHR learning methods capture only a subset of these properties. To bridge this gap, we propose Multi-task Graph transformer for Heterogeneous Temporal EHRs (MiGHT-EHR), which jointly models all three within a unified representation learning method. MiGHT-EHR constructs a heterogeneous graph from EHRs in which nodes represent clinical entities and edges connect statistically associated entities identified via normalized point-wise mutual information. Across MIMIC-III and MIMIC-IV datasets, MiGHT-EHR outperforms state-of-the-art methods on average across four tasks: drug recommendation, prediction of length-of-stay, mortality, and readmission, with particularly strong improvements in mortality and readmission prediction. Furthermore, a post-hoc analysis of the learned representations reveals that patient neighborhoods are organized by clinical outcomes, salient medical concepts are recoverable as linear directions in the representation space, and task probabilities are well calibrated. Collectively, these findings demonstrate that MiGHT-EHR representations support diverse prediction tasks while preserving clinically interpretable structure.
Aug 1, 2026cs.LG

CT-HEG: A Bidirectional, Timestamp-Attributed Event Graph for ICU In-Hospital Mortality Prediction - An Architectural Ablation Study

Accurate ICU mortality prediction requires modeling irregular clinical observations across heterogeneous entity types. Existing sequence models handle irregular sampling but ignore typed relational structure; existing graph models assume fixed-interval inputs. We introduce the Continuous-Time Heterogeneous EHR Graph (CT-HEG) schema and evaluate which architectural choices drive predictive performance. CT-HEG encodes each ICU stay as a typed, timestamped graph with three node types (visit, vital, lab_event) and 2D edge attributes (t_hours/48, value_norm) encoding timing and value without imputation. We instantiate CT-HEG as CHIRP-Net, a four-layer heterogeneous GATv2Conv network, evaluated on MIMIC-IV v3.1 (31,142 ICU stays, LOS>=48h, 13.4% mortality) with five seeds and bootstrapped confidence intervals, against logistic regression, mTAND, a Transformer, and GRU-D, plus an ablation study. CHIRP-Net achieved 5-seed mean AUROC 0.8449+/-0.0071 (AUPRC 0.4958+/-0.0209); the ensemble achieved AUROC 0.8618 (95% CI: 0.8485-0.8745). Removing reverse edges disconnected observation nodes from the visit readout, cutting AUROC by 0.1968+/-0.0073. Time-attentive edge features contributed 0.0247+/-0.0093 AUROC. Collapsing heterogeneous edge types into one relation (7x fewer parameters) outperformed the full model on all seeds. Post-calibration ECE was 0.0307. Temporal and demographic subgroup analyses were explored but not reported here, pending follow-up work. Bidirectional connectivity was necessary for the model to use its inputs at all, and CT-HEG was reasonably well calibrated after validation-fitted temperature scaling. These results support CT-HEG for irregular EHR data, while external validation, a pre-specified temporal evaluation, and a demographic fairness audit remain necessary before any claim of robustness. Code: https://github.com/nasiruddinstudents-ctrl/chirp-net-mimic-iv.
Jul 28, 2026cs.AI

TRWH: A Text-Driven Random Walk Heterogeneous GNN for Semantic-Aware Sparse Recommendation

Graph Neural Networks (GNNs) and Large Language Models (LLMs) have each advanced recommendation systems by modeling structural and semantic signals, respectively. However, integrating their complementary strengths remains challenging, particularly in sparse settings where maintaining semantic precision is critical. We propose TRWH (Text-driven Random Walk Heterogeneous Graph Neural Network), a novel framework that fuses LLM-generated textual profiles with heterogeneous graph structures through strategic random walk augmentation. TRWH consists of three core components: (1) Embedding Creation, which produces user and item representations using both Word2Vec and LLM-based profiling; (2) a Heterogeneous Graph Neural Network (HeteroGNN) that propagates information across multi-relational edges; and (3) Random Walk-based Path Construction, which enriches sparse graphs with second-order user-user and item-item links. Experiments on the Amazon-2023 Fashion (2M users, 825K items) and Beauty (631K users, 112K items) datasets demonstrate that TRWH achieves substantial performance gains over state-of-the-art methods, including 80.0% RMSE and 52.6% MAE reductions on Fashion, and 25.7% and 10.8% improvements on Beauty. Notably, while random walks improve performance with traditional embeddings, they can dilute the nuanced representations learned by LLMs, underscoring the importance of adaptive integration strategies.
Jul 25, 2026cs.LG

ParasGB: A Graph Benchmark Suite for Parasitic Estimation on AMS Circuits

As chip manufacturing processes advance to deep submicron nodes, parasitic interconnect effects increasingly dominate the performance of analog and mixed-signal (AMS) circuits and often lead to costly layout iterations. This makes early-stage estimation of parasitic capacitance and resistance important for parasitic-aware design exploration before full physical implementation. However, progress on GNN-based parasitic modeling has been hindered by the lack of public, high-fidelity RC benchmarks that support reproducible evaluation. To address this gap, we introduce ParasGB, the first open-source benchmark suite for pre-layout parasitic parameter prediction on circuit graphs. ParasGB provides large-scale, heterogeneous RC networks extracted with commercial EDA tools from tape-out-proven designs, together with a unified evaluation protocol covering node-level ground capacitance, edge-level resistance, and edge-level coupling capacitance. Within this framework, we benchmark diverse GNN architectures using a standardized training pipeline and expose challenges such as extreme label imbalance, long-tailed parasitic distributions, and strong structural heterogeneity. By establishing a physically grounded and standardized benchmark for early-stage parasitic prediction, ParasGB provides an open platform for reproducible research on circuit graph learning and parasitic-aware model development. All datasets, preprocessing scripts, and configurations are publicly available in our code repository https://github.com/ShenShan123/ParasGB.git.
Jul 22, 2026cs.LG

Cardinality-Decomposed Loss: Matching Training Objectives to Relation Structure in Heterogeneous Recommendation Graphs

Graph Neural Networks trained on heterogenous bipartite graphs form a common basis in recommendation systems. These graphs often express relations that vary in cardinality, for example, user-item preferences are one-to-many and user-attribute features are one-to-one. Traditionally, a unique loss function is applied for all of the network components which is often Bayesian Personalized Ranking (BPR). While BPR works well for the recommendation task, we find that it causes attribute embeddings to collapse to near-random geometry -- a silent failure that leaves standard ranking metrics largely unaffected and therefore invisible to conventional evaluation. This in turn pollutes user node embeddings, which are shaped by both edge types simultaneously, hurting downstream tasks like personalization, segmentation, etc. Here we propose a Cardinality-Decomposed Loss (CDL) that combines both Cross Entropy (CE) and BPR to enable the model to collectively optimize for relations across cardinalities. We confirm this CE-BPR conflict by showing the two losses compete in the shared encoder's parameter space. We evaluate CDL on five datasets spanning two structural configurations -- one-to-one attributes on user nodes (MovieLens-1M, Last.fm-360K, PayPal Audience Factory, BookCrossing) and on item nodes (Yelp) -- and find that CDL consistently improves discriminability in attribute embeddings. We also show that ranking (NDCG) improves when attributes carry meaningful preference signal, but conflicts with it when the correlation is weak. We use a lambda parameter to navigate this trade-off, and a lambda-sweep reveals that dataset behavior is governed by two graph properties -- semantic alignment and topology leakage. Semantic alignment measures whether the attribute predicts preferences, while topology leakage measures whether the graph's connectivity already encodes it.
Jul 21, 2026cs.AI

Sequential Learner Modeling Using Multi-Relational Graph Convolutional Networks

User modeling is a critical task in a variety of personalized systems. Recognizing their effectiveness in learning from graph-structured data, Graph Neural Networks (GNNs), particularly Graph Convolutional Networks (GCNs), are increasingly employed for user modeling. However, existing approaches typically treat different relation types in a graph as homogeneous, limiting their ability to capture richer semantics and construct more informative user models. While multi-relational GNNs (MR-GNNs) have been adopted for representation learning and recommendation, their application for user modeling remains unexplored. Moreover, existing GNN-based user modeling approaches ignore the user interaction sequence. To address these research gaps, in this work we propose MR-ConceptGCN, a novel fully unsupervised approach focused on concept-based sequential learner modeling using multi-relational GCNs (MR-GCNs). MR-ConceptGCN effecively combines Personal Knowledge Graphs (PKGs), MR-GCNs, and the pre-trained language model SBERT to obtain enhanced relation- and semantic-aware representations of the PKG items. The enriched embeddings of the knowledge concepts that a learner did not understand when interacting with learning materials in CourseMapper are then used to construct a sequential learner model that combines long-term and short-term learner interactions. We report the results of an online user study (n = 31), demonstrating the benefits of MR-ConceptGCN in terms of several important user-centric aspects including accuracy, usefulness, diversity, and satisfaction with an educational recommender system.
Jul 7, 2026cs.LG

Canopy: A Heterograph Foundation Model for Metabolic Engineering

Designing microbial strains that produce high-value chemicals at commercially viable titers remains a central challenge in metabolic engineering. Existing computational approaches either rely on stoichiometric constraint-based models that cannot learn from experimental data, or apply tabular machine learning to hand-crafted features that discard the relational structure of biological knowledge. We present Canopy, a heterogeneous graph foundation model that integrates ten public and proprietary data sources into a unified knowledge graph (KG) of 6.9M nodes across 13 types and 34 edge types, covering genes, proteins, metabolites, reactions, pathways, strains, and fermentation experiments. Node features are encoded through domain-specific foundation models (ESM-2 for protein sequences, MoLFormer for chemical SMILES, and PubMedBERT for biomedical text), yielding a multi-modal representation within a single graph. We pretrain a Heterogeneous Graph Transformer (HGT) augmented with SignNet positional encodings, Jumping Knowledge aggregation, and virtual nodes using four self-supervised objectives (link prediction, masked node modelling, distance prediction, and contrastive experiment clustering), balanced via learned homoscedastic uncertainty weighting. On the downstream task of fermentation titer prediction, frozen Canopy embeddings achieve R2=0.41R^{2} = 0.41 with a lightweight probe, outperforming tabular baselines (best R2=0.24R^{2} = 0.24) and homogeneous GNN variants.
Jul 3, 2026cs.CR

LLM-Enhanced Hierarchical Heterogeneous Graph Representation Learning for Malicious Python Package Detection

Malicious Python packages have become a major threat to software supply chain ecosystems due to the widespread adoption of open-source repositories such as PyPI. Existing learning-based detection methods struggle to capture the hierarchical organization and heterogeneous interactions among different program entities. Although Large Language Models (LLMs) have demonstrated strong capabilities in code understanding and semantic reasoning, they are rarely integrated with structural program representations for fine-grained malicious behavior analysis. In this paper, we propose an LLM-enhanced hierarchical heterogeneous graph representation learning framework for malicious Python package detection. The framework constructs a hierarchical heterogeneous code graph that explicitly models heterogeneous code entities and different types of structural dependencies. LLMs are further leveraged to infer function-level semantic roles, introducing an additional layer of semantic heterogeneity. Based on this graph, we develop a hierarchical heterogeneous graph neural network that performs type-aware message passing over different node and edge categories, effectively modeling malicious behavior propagation for accurate package-level classification. The framework also incorporates a function-level attribution mechanism which, combined with LLM reasoning, automatically identifies suspicious functions and localizes fine-grained malicious behaviors without human expert intervention. Extensive experiments on real-world datasets show that our framework consistently outperforms traditional machine learning methods, graph-based detectors, and state-of-the-art LLMs across packages with varying sizes and dependency complexities, while providing accurate, robust, and interpretable malicious behavior localization.
Jul 3, 2026cs.LG

Heterogeneous Graph Condensation via Role-Aware Clustering

Heterogeneous Graph Neural Networks (HGNNs) have exhibited remarkable efficacy in modeling complex systems with multiple types of nodes and relations, yet their training on large-scale heterogeneous graphs remains computationally prohibitive. Although graph condensation methods can effectively improve learning efficiency on large-scale graphs, existing condensation processes are mainly designed for homogeneous graphs and typically rely on computationally expensive gradient matching or bilevel optimization paradigms, rendering them impractical for heterogeneous settings. To address these limitations, we propose HGC-RC, a simple yet effective role-aware heterogeneous graph condensation framework. Specifically, HGC-RC first extracts semantically enhanced node embeddings via lightweight propagation. It then introduces a role-aware hybrid clustering strategy consisting of class-partitioned clustering for labeled target nodes to preserve class distributions and unsupervised type-wise clustering for non-target nodes to retain critical cross-type connectivity. Finally, a compact heterogeneous graph is efficiently reconstructed based on the resulting cluster assignments. Extensive experiments demonstrate that HGC-RC outperforms state-of-the-art baselines, offering a practical pathway to accelerate HGNN training on large-scale heterogeneous graphs without sacrificing task performance
Jul 2, 2026cs.AI

Spatial Support Matters: Geometry-Aware Graph Fusion for Rainfall Field Reconstruction

Fine-scale rainfall reconstruction is critical for urban flood modeling, but real rainfall sensing systems observe the field through incompatible spatial supports: gauges measure points, microwave links measure paths, and radar/satellite products measure gridded areas. These differences in measurement support impose geometrically distinct constraints on the rainfall field, yet existing heterogeneous graph approaches reconcile such sources in feature space, giving each its own embedding while discarding the geometry of its support. We propose a geometry-aware multi-support heterogeneous graph neural network that represents each observation according to its support type (0D point, 1D line, or 2D grid) as a distinct node layer, and fuses them through cross-support message passing into a point-support prediction layer from which the field is reconstructed. An inductive masked-node formulation decouples prediction resolution from sensing resolution, allowing the same trained model to reconstruct the field at user-defined target locations or display grids. On Singapore data, the proposed method reduces RMSE by 23.2% over the classical interpolation baseline, inverse-distance weighting, and consistently outperforms other neural architectures such as convolutional fusion and support-agnostic heterogeneous graph baselines. A generalization study using data from Sydney, Australia lets us characterize when multi-support fusion helps: the available skill appears to depend on gauge spacing relative to the spatial correlation length of the field, so fusion delivers the largest gains where the field is under-sampled relative to its correlation length and little when it is already resolved. Code and models will be open-sourced upon paper acceptance.
Jun 28, 2026cs.LG

Blackknife: Hard-Label Query-Limited Black-Box Attacks on Heterogeneous Graph Neural Networks

Heterogeneous graph neural networks (HGNNs) have achieved strong performance in modeling complex graph-structured data with multiple node and relation types. However, their robustness under realistic black-box adversarial settings remains insufficiently explored. Existing attacks on HGNNs usually assume access to model gradients, soft prediction scores, or the complete graph structure, which is often unavailable when HGNN-based services are deployed as closed systems. In this paper, we propose Blackknife, a hard-label, query-limited, and structure-limited black-box evasion attack framework for heterogeneous graph neural networks. Blackknife assumes no access to the victim model architecture, parameters, gradients, logits, confidence scores, or the full graph structure. Instead, it only relies on locally observable one-hop heterogeneous structures and a small number of hard-label queries. To generate effective perturbations under these strict constraints, Blackknife first constructs a local relation-aware surrogate model from observable heterogeneous neighborhoods. It then relaxes discrete edge addition and deletion operations into continuous soft weights and optimizes them through projected gradient descent. Finally, the optimized perturbations are discretized into relation-preserving structural rewiring operations and verified using limited hard-label feedback from the victim model. Extensive experiments on three benchmark heterogeneous graph datasets, including ACM, DBLP, and IMDB, demonstrate that Blackknife consistently achieves strong attack success rates against representative HGNN models. The results further show that Blackknife remains effective under topology-based defense strategies, revealing the vulnerability of HGNNs to local structure-limited black-box attacks.
Jun 26, 2026cs.LG

GNBAN: Graph Neural Basis Attention Networks for Long-Horizon Forecasting over Large Entity Sets

Demand forecasting at the bottom of a retail hierarchy requires predicting tens of thousands of correlated long-horizon series across products, stores, and regions. Modern systems must scale across massive catalogs, capture shared demand dynamics, and remain interpretable enough to be trusted. Classical statistical methods need a separate model per series and are hard to manage at scale; deep autoregressive models struggle as the joint state grows to tens of thousands of dimensions; and recent graph-based forecasters, while capturing cross-entity dependencies, often produce opaque long-horizon forecasts. We propose GNBAN (Graph Neural Basis Attention Network), an end-to-end architecture combining heterogeneous graph representation learning with an interpretable basis-decomposition head. Retail data are represented directly as a heterogeneous graph derived from the relational schema, so a single model serves the entire catalog. Rather than predicting the horizon directly, GNBAN decomposes each forecast into trend, seasonal, and generic components. Its key innovation is a per-basis attention mechanism: each basis function keeps its own learnable query and retrieves information independently from the entity's historical neighborhood, letting different bases specialize to distinct temporal patterns while preserving interpretability. On two large-scale benchmarks, M5 Walmart and Favorita Grocery Sales, evaluated under matched protocols, GNBAN improves volume-weighted WRMSSE by roughly 4-5% over a matched graph baseline. Qualitative analysis shows the learned decomposition exposes trend, seasonal, and residual demand drivers without post-hoc explanation methods. These results demonstrate that scalable relational forecasting and interpretable forecast decomposition can be achieved together in a unified graph-based framework.
Jun 25, 2026cs.LG

hia-gat: A Heterogeneous Interaction-Aware Graph Attention Network For Frame-Level Traffic Conflict Risk Prediction On Freeways

This paper formulates frame-level freeway risk assessment as a multi-agent scene graph-level binary classification problem, where each video or trajectory frame is labeled risky if any TTC- or PET-based conflict violates a specified severity threshold. We construct a relation-aware graph per frame with vehicles as nodes and two interaction types as edges: same-lane (longitudinal) and adjacent-lane (lateral), augmented with physics-informed edge features aligned to rear-end and lane-change conflict mechanisms. Building on a structured benchmarking suite of non-graph models and graph baselines, we propose HIA-GAT, a dual-stream heterogeneous graph attention network that processes longitudinal and lateral interactions through dedicated attention pathways and fuses them via a conflict-type-aware gating mechanism with event-level gate supervision derived from SSM conflict attribution. Experiments on the NGSIM I-80 and US-101 freeway datasets across nine TTC and PET threshold configurations show that HIA-GAT achieves the best average risk-ranking performance (AUC 0.835 on I-80 and 0.867 on US-101), with the largest gains on PET-only (lane-change) settings where relational structure is essential. Beyond accuracy, the learned gate provides interpretable per-vehicle attribution of dominant conflict type, supporting actionable, real-time freeway safety monitoring. We show that graph structure is critical for modeling lateral conflict risk, while longitudinal risk can often be captured by non-relational aggregation.
Jun 18, 2026cs.LG

Physics-Guided Dual-Stream Heterogeneous Graph Neural Network for Predicting Full-Field Structural Response of Stiffened Panels

Iterative design and optimization of large, complex structures require fast and accurate prediction of stress, displacement, and other fields. Finite element analysis (FEA) is computationally expensive for this task. Existing neural network surrogates often struggle with varying topologies and complex boundary conditions. This study proposes the novel Dual-Stream Heterogeneous Graph Neural Network (DS-HGNN) for full-field stress and displacement prediction in thin-walled structures, demonstrated on box beams made of stiffened panels. DS-HGNN operates on panel-level heterogeneous graph representations and introduces physics-guided edge states initialized from edge types, spatial information, and boundary kinematics. These states are updated through dual-stream message passing that separates longitudinal and transverse structural information while allowing cross-stream exchange. Geometry and loading effects are incorporated through Feature-wise Linear Modulation (FiLM)-conditioned 1-D spectral convolutions, and physical fields are reconstructed using a spectral-bypass low-rank readout. The model is evaluated on stiffened panel datasets with different geometries, boundary kinematics, loading conditions, and material nonlinear responses. DS-HGNN achieves the lowest stress and displacement RMSE compared with six benchmark heterogeneous graph neural network models. It also reaches comparable accuracy to the strongest benchmark models using 19%-38% fewer training samples. A targeted evaluation further shows that DS-HGNN captures yield and post-yield stress features.
Jun 17, 2026cs.LG

ChronoSurv: A Clinical Pathway-Guided Graph Framework for Multimodal Survival Analysis

Accurate survival prediction is essential for personalized treatment planning in head and neck cancer, yet remains challenging due to the heterogeneous and high-dimensional nature of multimodal clinical data. While deep survival models have improved predictive performance over classical statistical approaches, existing methods typically rely on static fusion strategies or temporally agnostic modeling, limiting their ability to capture structured clinical workflows. In this work, we propose ChronoSurv, a heterogeneous hierarchical directed graph framework for multimodal survival analysis. ChronoSurv represents patient care as a progression-aware clinical trajectory using directed graphs aligned with key diagnostic steps. A hierarchical topology incorporates fine-grained, coarse, and global representations, further supporting flexible adaptation to missing modalities, while heterogeneous message passing models complex and asymmetric relationships across modalities and clinical steps. Experimental results on two public datasets demonstrate that ChronoSurv achieves state-of-the-art discriminative performance while maintaining statistically reliable calibration. Comprehensive ablation studies further confirm the contribution of each architectural component, highlighting the potential of trajectory-aware graph modeling for multimodal survival prediction.
Jun 16, 2026cs.LG

TMR-GGNN: Credit Card Fraud Detection based on Time-Aware Multi-Relational Guided Graph Neural Network

In recent years, credit card fraud detection has faced significant challenges due to highly imbalanced data, evolving fraud patterns, and complex relational structures among transaction entities. To address these issues, this research proposes a novel framework called Timeaware Multi Relational Guided Graph Neural Network (TMR GGNN). Particularly, the proposed TMR GGNN extends the encoder decoder Graph Neural Network GNN architecture by modeling heterogeneous interactions across customers, merchants, devices, and IPs over temporal windows. Subsequently, the proposed TMR GGNN approach constructs a dynamic, multi relational graph and incorporates a time aware relational attention mechanism within the encoder to adaptively weigh the transaction relevance based on temporal proximity and semantic context. Consequently, the decoder employs a contrastive learning module to distinguish between real and synthesized transaction patterns, while improving the models generalization of rare fraud cases. Additionally, to effectively manage severe class imbalances and emphasize discriminative learning, a composite loss function combining Information Noise Contrastive Estimation (InfoNCE) based contrastive loss with Focal Loss is introduced. This integration assists in improving fraud identification while mitigating false negatives.
Jun 15, 2026cs.LG

TCHG: Tri-Trust Conditioned Heterogeneous Graph Learning for Reliable Dynamic Trust Prediction

Trust prediction infers latent user-user trust relations and provides important support for social recommendation, fake-review and manipulation detection, and risk identification. Graph neural networks have become a prominent approach to trust prediction because of their ability to learn network structures and complex trust dependencies. However, existing methods often rely on a unified representation of trust signals and do not disentangle heterogeneous trust evidence into separate evidence channels, failing to exploit the distinct roles that different evidence channels should play during trust modeling. To address this gap, this paper argues that trust evidence should not be treated as an undifferentiated input, but should be decomposed and used as functional control factors over graph propagation. We propose TCHG, a tri-trust conditioned heterogeneous graph learning framework that decomposes trust evidence into three channels and assigns them distinct functional roles in propagation: entity reliability governs message admission, interaction-behavior reliability modulates propagation strength, and contextual trust adjusts the propagation mode through context-conditioned operator selection. Since the three evidence channels evolve at different temporal scales, TCHG maintains independent temporal states with non-uniform decay rates to prevent rapidly changing contextual signals from overwriting slowly accumulated entity reliability. It further predicts trust probability and calibrates the output probability, improving predictive confidence under sparse or conflicting evidence. Extensive experiments on multiple public trust datasets show that TCHG achieves effective and reliable trust prediction compared with representative trust prediction and heterogeneous graph baselines.
Jun 15, 2026cs.LG

Multi-Modal Spatio-Temporal Graph Neural Network with Mixture of Experts for Soil Organic Carbon Prediction

Top-soil organic carbon (SOC) prediction is fundamental to agricultural sustainability, land use policy and fertilization planning. Existing approaches face two limitations: they pair hand-crafted covariates with classical ML or single-modal deep models that miss rich spectral and temporal information, and grid-based architectures ignore the irregular spatial structure of field measurements. We introduce SpTGNN, a multi-modal spatio-temporal graph neural network addressing both. SpTGNN represents soil measurements as nodes in a heterogeneous graph with three edge types (spatial proximity, spectral similarity, elevation), and applies relational graph attention to learn separate patterns per relation. A fine-tuned TerraMind encoder extracts node features from Sentinel-2, Sentinel-1 and DEM signals, combined with per-sample environmental covariates and learned positional and temporal embeddings. A sparse Mixture-of-Experts module fuses the four streams via top-kk routing. Uncertainty is captured by pairing heteroscedastic regression (aleatoric) with deep ensembles (epistemic), and a Moran's II penalty regularizes spatial autocorrelation. We evaluate on a global SOC corpus split into three regional instances (∼\sim49k samples globally, Africa ∼\sim26k, Europe ∼\sim14k). Our 5-member deep ensemble reports R2=0.762R^2=0.762, RMSE =3.51±0.48=3.51\pm0.48 g/kg and MAPE =22.9%=22.9\% on the Africa test split, improving over a tabular XGBoost baseline; the best single checkpoint reaches validation R2=0.864R^2=0.864. Ablations confirm the heterogeneous graph, MoE fusion and fine-tuned backbone each contribute substantively, and the ensemble UQ stack achieves post-calibration ECE of 0.0310.031 (hybrid) and 0.0260.026 (ββ-NLL). To our knowledge, this is the first framework to unify foundation-model feature extraction, heterogeneous graph attention and decomposed uncertainty quantification for SOC estimation.
Jun 6, 2026eess.AS

Paediatric-HGNN: A Hybrid Heterogeneous Graph Neural Network for Detecting Disfluency in Children's Speech via Multiscale Acoustic Fusion

Automated stuttering detection (ASD) systems struggle with paediatric speech due to high acoustic variability in developing voices and the subtle distinction between pathological stuttering and typical developmental disfluencies. We introduce Paediatric-HGNN, a framework using a Context-aware Part-whole Interaction Network (CaPIN) tailored for paediatric data. Instead of conventional 1D signal modelling, our approach builds a heterogeneous graph capturing hierarchical relationships between lexical units (word nodes) and fine-grained acoustic segments (frame nodes). Trained on curated paediatric corpora (UCLASS and FluencyBank), Paediatric-HGNN achieves 82.4% weighted accuracy and a Typical Disfluency F1-score of 0.386. Modelling hierarchical lexical-acoustic interactions captures developmental "searching" behaviour, offering a more robust and interpretable tool for early clinical intervention.
Jun 6, 2026cs.AI

OSMGraphCLIP: Learning Global Location Representations from OpenStreetMap Graphs

We present OSMGraphCLIP, a CLIP-style geospatial representation model that learns global location embeddings from freely available OpenStreetMap (OSM) data. OSMGraphCLIP represents geographic environments as heterogeneous graphs of typed OSM features, preserving the topological and semantic relationships among roads, buildings, land-use regions, and points of interest. A multi-scale graph encoder captures both fine-grained local structure and broader landscape composition, and supervises a spherical-harmonics location encoder through a contrastive alignment objective. We evaluate OSMGraphCLIP across a diverse suite of downstream geospatial regression and classification tasks spanning climate, ecology, socioeconomic indicators, public health, land cover, biodiversity, and wildfire forecasting, and show that structured OSM data alone supports strong global location representations across domains. OSMGraphCLIP matches or exceeds satellite-based baselines on the majority of benchmarks, with the most pronounced advantage on socioeconomic and public-health tasks, where OSM's explicit semantic annotation of the built environment encodes patterns of human activity that satellite pixels can only capture indirectly. On ecological and environmental tasks, the model remains closely competitive with imagery-based methods despite using no Earth observation data. Qualitative analysis confirms that the learned embeddings organize geographic space coherently, recovering biome boundaries, urban gradients, and tropical--temperate distinctions from map topology alone.
Jun 5, 2026cs.AI

Hierarchical Semantic-Constrained Heterogeneous Graph for Audio-Visual Event Localization

Open-vocabulary audio-visual event localization (OV-AVEL) jointly models audio-visual cues to recognize and temporally localize events, including categories unseen during training. Existing methods primarily learn joint audio-visual representations in Euclidean space, but still face two significant challenges. First, the lack of supervision signals for unseen categories makes it difficult to maintain audio-visual consistency across multiple temporal scales. Second, the lack of hierarchical constraints between segment- and video-level semantics prevents the model from establishing semantic consistency across different levels. To address these challenges, we propose a hierarchical semantic constrained heterogeneous graph (HSCHG) for audio-visual event localization framework. We first construct a heterogeneous hierarchical graph in Euclidean space, which includes audio and visual segment nodes and their corresponding video-level nodes. We use multi-directional temporal edges to capture complete temporal information within each modality. Simultaneously, we employ a dual-threshold filtering gated fusion strategy, introducing cross-modal information only when the alignment confidence is high. Furthermore, we introduce bidirectional semantic constraints between segment- and video-level representations to achieve semantic consistency across different levels. Based on this, we map the multi-level audio-visual representations and text prototypes uniformly into hyperbolic space. We use a hierarchical entailment regularization loss to characterize the hierarchical relationships between videos and segments. Extensive experimental results show that our method outperforms existing methods on the OV-AVEL benchmark. Ablation studies further validate the effectiveness of our method.
Jun 4, 2026cs.CV

HDST-GNN: Heterogeneous Dynamic Spatiotemporal Graph Neural Networks for Multi-Object Tracking in UAV Aerial Imagery

Multi-object tracking (MOT) from UAV imagery presents unique challenges: altitude varies across sequences, objects are small and densely packed, and frequent occlusion causes identity switches. Existing graph-based trackers assume fixed spatial context and treat all objects uniformly, ignoring the heterogeneous lifecycle states of detections, active tracklets, and lost targets. We propose HDST-GNN, a Heterogeneous Dynamic Spatiotemporal Graph Neural Network with three novel contributions. First, Altitude-Adaptive Edge Construction estimates a camera-altitude proxy from mean object area and adjusts the graph connectivity radius accordingly. Second, Heterogeneous Node Representation models detections (Type-D), confirmed tracklets (Type-T), and lost tracklets (Type-L) as distinct node types with dedicated projections and typed edge relations. Third, Occlusion-Gated Temporal Aggregation gates each node's attention contribution by its occlusion confidence, preventing occluded nodes from corrupting neighbour embeddings. HDST-GNN is trained end-to-end with a differentiable Sinkhorn head using joint cross-entropy and triplet loss. On VisDrone2019-MOT with oracle detections, HDST-GNN achieves 94.51% MOTA and 97.24% IDF1, outperforming SORT by +5.0 MOTA points and reducing identity switches by 81%. With real YOLOv8n detections, HDST-GNN reduces identity switches by 49% vs. SORT. Ablation studies confirm the independent contribution of each component.
Jun 2, 2026q-bio.MN

BRIDGE: Biological Evidence Refinement and Heterogeneous Dynamic Gating for Gene Regulatory Networks

Motivation: Gene regulatory network inference from single-cell RNA sequencing (scRNA-seq) data is important for uncovering cell-state-specific transcriptional programs. However, scRNA-seq measurements are sparse and noisy, and experimentally validated TF-target interactions remain limited, making reliable inference challenging. Although graph neural networks have advanced GRN prediction, existing methods often rely on biologically unconstrained graph augmentation, such as random edge perturbation, and insufficiently control information transfer between genes and cells. These limitations may distort regulatory structures and weaken robustness under noisy and weakly supervised settings. Results: To address these issues, we propose an innovative framework named Biological Evidence Refinement and Heterogeneous Dynamic Gating for Gene Regulatory Networks (BRIDGE). BRIDGE extracts gene and cell representations from the expression matrix and its matrix dual, and performs contrastive learning in the gene space and cell space between self and neighbors across the co-expression-refined regulatory view and the original graph. It then applies heterogeneous gated encoding to adaptively regulate information transfer between genes and cells, enabling robust transcription factor-to-target gene prediction. Experiments on benchmark datasets spanning three network types and seven cell types show that BRIDGE achieves state-of-the-art AUROC and AUPRC in most settings. In particular, on Specific networks, BRIDGE improves average AUPRC by 5% over the second-best baseline, GCLink. In cross-cell-type few-shot transfer, BRIDGE consistently outperforms GCLink and GENELink across all six target cell types. A case study on hESC further supports the biological relevance of the predictions, with 9 of the top 10 and 46 of the top 100 novel TF-target interactions validated by ChIPBase.
Jun 2, 2026cs.LG

HiSE: A Lightweight Hierarchical Semantic Explainer for Heterogeneous Graph Neural Networks

Heterogeneous graph neural networks (HGNNs) have demonstrated remarkable performance in modeling complex relational data, however their interpretability in high-stakes applications remains a critical challenge. Existing explanation methods suffer from two major limitations: on the one hand, the generated explanations fail to reflect the inherent semantic hierarchy of HGNNs, resulting in a lack of fidelity to the model's internal decision-making mechanism; on the other hand, feature explanations often rely on complex search or perturbation mechanisms, leading to excessive computational complexity and poor efficiency. To address these issues, we propose HiSE, a lightweight feature-oriented interpretable model for HGNNs. HiSE achieves semantically aware feature explanations through hierarchical semantic modeling: at the semantic level, local surrogate models based on the Least Absolute Shrinkage and Selection Operator (LASSO) are employed to learn sparse feature representations under each semantic view; at the cross-semantic level, the contributions of different semantic views are adaptively characterized via KL divergence to produce a unified explanation. Extensive experiments demonstrate that HiSE outperforms existing methods in terms of fidelity, robustness, and cross-semantic explanation capability, while its lightweight framework incurs low computational overhead, enabling efficient application to large-scale, complex real-world heterogeneous graphs.
May 27, 2026cs.CL

GraphLit: Learning Text-Enriched Dynamic Character Network Representations for Literary Study

Methods to represent literary texts as graphs or sequences of graphs mainly focus on representing character interactions, and often overlook another crucial aspect: the textual context in which characters interact. We introduce Dynamic Heterogeneous Character Networks (DHCNs), which organize long novels into temporally localized heterogeneous graphs that align characters with their textual contexts. We extract around 20,000 DHCNs from Project Gutenberg, and propose GraphLit, a self-supervised learning framework that learns rich literary representations through a masked graph autoencoder objective. Across a wide range of 12 character-related tasks, GraphLit improves over text-only, graph-only and prior hybrid baselines. Ablations over different kinds of dynamic graph structures and architectural elements show that grounding characters in their context is the main performance driver, while explicitly encoding narrative order and character relationships provide task-dependent improvements. Finally, we demonstrate the applicability of DHCNs and GraphLit for literary analysis by studying the link between narrative non-linearity and dynamic social features.
May 26, 2026cs.LG

TED: Related Party Transaction guided Tax Evasion Detection on Heterogeneous Graph

Tax evasion causes severe losses of government revenues and disturbs the economic order of fair competition. To help alleviate this problem, the latest tax evasion detection solutions utilize expert knowledge to extract features and then train classifiers to determine whether a company is suspected of tax evasion. However, existing solutions mainly focus on the statistical features of the company, but fail to exploit the rich interactive information in tax scenarios, which affect the detection performance. In this paper, we first model the tax scenario as a heterogeneous graph and study the tax evasion detection problem under the heterogeneous graph model. To improve the performance of tax evasion detection, a novel graph neural network model is proposed to extract the comprehensive information of heterogeneous graphs. Specifically, we use heterogeneous and complex related party transaction groups to filter low-level noise information. Moreover, a hierarchical attention mechanism is designed to capture the deeper structure and semantic information hidden in the related party transaction group. We apply our method to the real risk management system of the tax bureau, and evaluate it on two human-labeled real-world tax datasets. The results demonstrate that our method significantly outperforms the state-of-the-art in the tax evasion detection task.