KG Construction

Court proceedings contain valuable evidence about human smuggling networks, but this information is often buried within unstructured, jargon-heavy legal documents. While large language models (LLMs) can support knowledge graph construction through automated information extraction, existing approaches rely on general-purpose models that are not tailored to the entity and relationship definitions required in this domain. We introduce FineREX, a streamlined knowledge graph construction pipeline built around a fine-tuned LLM for named entity recognition and relationship extraction (NER-RE). Using a manually annotated dataset of $512$ text chunks, FineREX achieves absolute improvements of 15.50% and 31.46% in entity and relationship F1-score, respectively, compared to a larger general-purpose baseline. These gains translate into higher-quality knowledge graphs, reducing legal noise by nearly half and lowering node duplication on long documents from 17.78% to 11.17%. By eliminating document rewriting and redundant extraction stages, FineREX also reduces end-to-end processing time by 50.0%. Our results demonstrate that domain-specific fine-tuning can substantially outperform larger general-purpose models while improving both the quality and efficiency of knowledge graph construction for illicit network analysis.

We introduce Darshana Graph, a corpus of over 125,000 text records spanning classical Hindu, Buddhist, and Jain philosophical traditions, drawn from public-domain and openly licensed translations of sources including the Bhagavad Gita, Brahma Sutras, principal Upanishads, the Pali Canon, and core Jain texts. Its distinctive contribution lies in a structurally unique subset of roughly 8,500 Hindu and Jain records in which the same root verse or sutra is aligned across eighteen historical commentators representing five schools of Vedanta and other darshanas, enabling direct comparison of how independent interpretive traditions read identical source material. To our knowledge, no publicly available resource provides comparable cross-commentator alignment at this scale. We present two analyses built on this corpus. First, a transparent stylometric comparison requiring no machine learning measures argumentative style through scriptural citation density, explicit refutation rate, and sentence complexity. It finds a moderate negative correlation between citation density and refutation rate, a marked increase in refutation rate across three commentators in a related doctrinal lineage, and measurable genre-level differences within the Pali Canon itself. Second, we describe a constrained large language model pipeline that extracts typed philosophical relationships between concepts using a predefined relation vocabulary and deterministic post-hoc validation. The resulting graph surfaces cross-school disagreement patterns while also revealing important extraction limitations, including cases where an independent embedding-based analysis disagrees with the graph-derived findings. We release the full corpus, extracted relationship graph, and all source code.

Knowledge graphs (KGs) have emerged as a promising solution for integrating and reasoning over complex biomedical and clinical data in healthcare. By representing structured relationships among entities such as diseases, drugs, symptoms, and patient records, KGs provide a semantic backbone for decision-making, prediction, recommendation, and personalized care. Recent advances have demonstrated their utility across diverse medical applications--including clinical decision support systems, disease and treatment outcome prediction, health recommender systems, precision medicine, and medical question answering--where KGs often enhance interpretability, semantic coherence, and patient-specific reasoning. In parallel, a growing body of work focuses on medical KG generation itself, proposing frameworks that construct graphs from EHRs, clinical narratives, biomedical literature, and web resources using ontologies, semantic web technologies, deep-learning-based information extraction, and hybrid neuro-symbolic pipelines. Despite this progress, significant challenges remain, including limited and fragmented knowledge coverage, difficulties in aligning heterogeneous data sources, the fragility of current reasoning and representation-learning methods on dense multi-relational graphs, and unresolved issues related to privacy, bias, and accountability. This survey reviews and categorizes current research on KGs in medicine along both application-oriented and methodology-oriented dimensions, discusses their benefits and technical foundations, and outlines key limitations and open research directions. By analyzing trends, architectures, and evaluation practices, this work aims to guide future developments in KG-driven medical AI systems and support their safe and effective integration into healthcare environments.

Current LLM-based research agents have advanced through agent orchestration, yet largely overlook scientific knowledge orchestration. Existing works often reduce papers to abstracts, surface mentions, and flat \texttt{cites} edges, omitting key entities, claims, evidence, mechanisms, and method lineages essential for scientific reasoning. To this end, we introduce \textbf{Agents-K1}, an end-to-end knowledge orchestration pipeline that converts raw documents into agent-native scientific knowledge graphs. Agents-K1 integrates three components under a unifying theoretical foundation: a multimodal parser whose five-module schema captures entities, multimodal evidence, citations, and typed inter-entity relations across the full paper rather than abstracts alone; a 4B information-extraction backbone trained with GRPO under a rule-based reward; and a graphanything CLI, a tri-source agent interface that unifies web search, multimodal graph retrieval, and cross-document traversal. On top of this, we process 2.46 million scientific papers across six subjects to produce \textbf{Scholar-KG}, of which we release a one-million-paper subset, and the full Scholar-KG is accessible via the SCP link below. The same pipeline can be extended to general-domain corpora and to schema-conformant data synthesis. Extensive experiments demonstrate that Agents-K1 achieves superior performance in scientific information extraction, knowledge graph construction, and multi-hop scientific reasoning.

Mathematical knowledge is split between bibliographic databases (e.g., MathSciNet, zbMATH Open) and formal proof libraries (e.g., Lean mathlib), preventing unified access between published results and their formalizations. We propose a relational bridge-database that aligns publication metadata with formal artifacts, providing an interoperability layer between mathematical literature and machine-verifiable proofs. We introduce a paper-level formalization score that measures how much of a publication is covered in formal systems. As a feasibility study, we show how such scores can be estimated via cross-document alignment between informal texts and Lean formalizations, enabling large-scale analysis of formalization coverage. This framework is a first step toward integrating bibliographic and formal mathematical ecosystems into scalable, machine-actionable knowledge graphs linking publications to formal proof objects.

Constructing knowledge graphs from 3D simulation scenes is essential for robot task reasoning, but the key bottleneck, grounding scene objects to formal ontology classes, still relies on manually curated dictionaries that are brittle and do not generalize across assets. We investigate whether large language models (LLMs) can automate this grounding step for Universal Scene Description (USD) scenes as a zero-shot, training-free alternative. On a kitchen scene (125 objects) with SOMA-HOME Ontology, LLMs achieve 90-96% exact-match accuracy with descriptive names and 49-89% with abbreviated names, substantially outperforming dictionary and embedding baselines. Under fully opaque names, context-augmented prompting recovers up to 48%. Feature ablation reveals that LLMs primarily exploit semantic cues in the scene graph (sibling names and parent paths); anonymizing these cues reduces accuracy to 0-6%, while geometry alone yields only 4-17%.

Linking FDA-approved medical devices to their underlying United States Patent and Trademark Office (USPTO) patents enables critical applications such as recall root-cause analysis, M&A-driven IP discovery, and technology trajectory mapping. However, this cross-domain entity linking task remains unexplored due to severe semantic gaps: FDA documents focus on clinical outcomes, while patents describe technical mechanisms, yielding minimal lexical overlap. We formalize medical device-patent linking as a challenging cross-domain entity linking problem characterized by label scarcity and domain shifts. Using cardiovascular devices as a high-impact, representative domain featuring diverse technologies, high recall rates, and abundant disclosures, we construct a benchmark with 434 devices, 698K patents, and 585 high-fidelity expert-verified pairs. To address these challenges, we propose Bridge-MedDevKG, a coarse-to-fine framework that integrates (1) MedDevOnto, a domain-specific ontology that anchors device concepts via three-tier UMLS normalization; (2) Multi-signal candidate generation fusing company affiliation, semantic similarity, and ontology-weighted entity overlap; and (3) Heterogeneous reranking with multi-signal scoring and XGBoost classification on hard negatives. Our approach achieves a conservative lower-bound recall of 91.6% on the gold standard with 50.9% noise reduction, substantially outperforming LLM baselines under comparable evaluation. The resulting MedDevKG provides 6.8M high-confidence links, laying a scalable foundation for regulatory-IP integration across medical specialties.

Scientific workflows increasingly generate structured JSON data that is easy to exchange but difficult to interpret consistently across systems due to lacking semantic interoperability. While JSON Schema ensures structural validation, it provides no native support for Linked Data semantics. This paper presents an RDF Authoring View extending the open-source JSON Schema editor MetaConfigurator, enabling researchers to transform existing JSON, YAML, or CSV data into RDF using AI-assisted RML mappings, refine triples, execute SPARQL queries, visualize knowledge graphs, and export RDF serializations within a single integrated web interface. This workflow is supported by ontology-aware IRI auto-completion, bidirectional synchronization between JSON-LD text views and RDF triple tables, and AI-assisted SPARQL query generation from natural language hints. We demonstrate the workflow using laboratory data from metal-organic framework (MOF) synthesis experiments. Protocol data describing reagents, procedure steps, and quantities is converted from JSON to ontology-based JSON-LD via RML mappings. We then refine the semantic representation, query relationships between experimental conditions and outcomes, and explore the resulting knowledge graph interactively. This integrated environment bridges conventional structured data management with Semantic Web technologies while preserving experimental context and lowering technical barriers through AI assistance.

Real-world data spans tables, documents, and semi-structured files with implicit semantics. Querying this data requires integrating evidence across inconsistent schemas and formats, yet existing approaches either demand costly manual engineering or bypass structure entirely. We present a system that automatically discovers an executable schema from raw multi-source data and uses it as a shared contract for knowledge graph construction and query-time retrieval. A closed-world field catalog constrains LLM-based schema discovery to attested fields; deterministic structural analysis infers identity keys, foreign keys, and source hierarchy; and the resulting schema drives extraction, deduplication, and cross-source linking into a provenance-aware knowledge graph. At query time the schema -- optionally extended via a monotonic protocol -- conditions a multi-tool agent routing retrieval across structured lookup, graph traversal, and vector search, returning grounded answers with traceable citations. In controlled zero-shot comparisons using the same LLM, data, and evaluation harness, the system improves over retrieval-only and decomposition-based baselines across four QA benchmarks, with ablations showing that schema-conditioned routing, structural intelligence, and schema-guided construction each contribute to the gains.

Through digital humanities research and scale-up historical data analysis, a significant amount of traditional historical text is converted into structured knowledge graphs. This paper provides a high-level architecture that combines bidirectional encoder representations of transformers (BERT) and graph neural networks (GNN) to extract the entities and relationships from various types of historical texts. The texts of traditional history resolve linguistic ambiguities, references limited by context, and a lack of established grammatical norms in a systematic way. This study develops a new image retrieval system based on FastRQNet and pre-trained vision-language model Vilt-qaformer+RoBInet in accordance with the aforementioned recommendations. The experiments make full use of a comprehensive collection of municipal records, parliamentary documents, and historical correspondence. When compared to conventional rule-based techniques and other popular deep-learning baselines, the joint BERT-GNN system obtains greater Precision, Recall, and F1-score (Table 2). Complex nested structures and implicit reference issues can be handled by this structure with sufficient accuracy and thoroughness when creating knowledge graphs. The aforementioned experiments show that combining relational graph learning algorithms with context-sensitive semantic representation techniques can automatically extract historical data to add accumulated wisdom to the knowledge repository.

Systematic characterization of drug-disease relationships is essential for drug discovery and repurposing, yet is hindered by the heterogeneity and rapid growth of biomedical literature. Existing datasets rely on labor-intensive curation and are often incomplete, while LLM-only approaches suffer from hallucination and weak evidence grounding. We introduce UniD$^3$, a unified framework that integrates Large Language Models with Knowledge Graph-enhanced Retrieval-Augmented Generation (KG-RAG) to extract, organize, and validate drug-disease knowledge across Drug-Disease Matching (DDM), Drug Effectiveness Assessment (DEA), and Drug-Target Analysis (DTA). UniD$^3$ processes 157,849 PubMed articles with Llama 3.3-70B and constructs knowledge graphs via a dual-stage strategy combining paper-level extraction with KG-level consolidation centered on drug and disease entities. These graphs support KG-RAG-based generation of structured datasets, evaluated through external benchmarks, fuzzy matching with curated resources, and clinician review. UniD$^3$ produces six knowledge graphs and large-scale datasets, including 28,915 DDM, 15,042 DEA, and over 4,000 DTA QA pairs. External validation shows strong performance (F1: 0.85-0.87 for DDM/DEA; 0.82 for DTA), with clinician review confirming high reliability (AUROC = 0.90). KG-RAG-augmented models outperform standalone LLMs, and the UniD$^3$ chatbot enables interpretable, citation-supported exploration of drug-disease relationships. UniD$^3$ provides a scalable, extensible framework for transforming unstructured biomedical literature into high-quality, structured drug-disease knowledge, supporting AI-driven discovery, repurposing, and precision medicine.

Retrieval-Augmented Generation (RAG) has become an essential method for mitigating hallucinations in Large Language Models (LLMs) by leveraging external knowledge. Although effective for simple queries, traditional RAG struggles with large-scale, unstructured corpora where information is highly fragmented. Graph-based RAG (GraphRAG) incorporates knowledge graphs to capture structural relationships, enabling more comprehensive retrieval for complex reasoning. However, existing GraphRAG methods rely on isolated, fragment-level extraction for graph construction, lacking a global perspective on the whole corpus. As a result, these methods frequently lead to thematically inconsistent, logically conflicting, and structurally fragmented graphs that degrade retrieval performance. In this paper, we propose MemGraphRAG, a novel framework that introduces a memory-based multi-agent system to ensure high-quality graph construction. Specifically, MemGraphRAG employs a collaborative society of agents supported by shared memory, which provides a unified global context throughout the extraction process. This mechanism allows agents to dynamically resolve logical conflicts and maintain structural connectivity throughout the corpus. Furthermore, we propose a memory-aware hierarchical retrieval algorithm tailored for the constructed graph. Extensive experiments on multiple benchmarks demonstrate that MemGraphRAG outperforms the state-of-the-art baseline models with comparable efficiency. Our code is available at https://github.com/XMUDeepLIT/MemGraphRAG.

Knowledge graphs over corpora of inter-referencing documents - scholarly papers, legal opinions, policy briefs - encode the topology of reference but not its stance. The standard representation collapses a rich evaluative relation into an untyped edge, losing the very content that supports community-level queries about how one document is received by another. We propose the claim network: a representational pattern in which each cross-document reference is reified as a typed claim, carrying source, target, claim text, and a four-class stance label grounded in the citation-intent literature. We give a construction pipeline applicable to any corpus of scholarly inter-referencing documents and instantiate it on a corpus of 127 papers in 3D point cloud semantic segmentation, producing a network of 8,260 typed claims. Three downstream task families demonstrate what the network enables: retrieval signal augmentation, aggregated-stance summarisation, and topological analytics. Head-to-head evaluation against standard Retrieval-Augmented Generation (RAG) baselines shows that the gain over flat retrieval is the gain from the right intermediate representation rather than the wrong one.

Question answering (QA) is a core challenge in AI, particularly for complex queries requiring multi-hop reasoning across documents, or symbolic operations like aggregation or exhaustive listing. Retrieval-augmented generation has become the dominant approach to QA, with recent graph-based variants addressing part of these issues by organizing knowledge to better support compositional questions. However, most textual graph-based RAG methods still lack the structure needed for symbolic operations useful to answer complex questions reliably. This motivates symbolic graph-based approaches, which extract knowledge graphs (KGs) whose relations are logic predicates that enable SQL-like querying. Yet these pipelines typically use LLMs for KG extraction, which can introduce consistency issues, where extracted facts may violate commonsense ontology constraints. We propose a neuro-symbolic framework for ontology-grounded KG construction combining open-domain extraction, embedding-based canonicalization of types and predicates, and targeted LLM-based correction of ontology violations. By deferring corrections to a post-extraction stage, our method avoids repeated LLM calls, substantially reducing token usage while improving KG consistency and preserving downstream QA quality. Finally, we show that the extracted KGs are well suited for symbolic querying by measuring the occurrence of SPARQL graph patterns.

Financial and economic research often relies on structured supply-chain disclosures and commercial databases. In China, supplier--customer disclosure is typically limited to major partners of listed firms, leaving unlisted firms and long-tail inter-firm links poorly captured in structured data. Public web evidence can partly complement this gap through corporate, government, and trade-media disclosures; however, full-text web mining at scale is costly because pages are often inaccessible or expensive to process with large language models (LLMs). We propose a snippet-driven method for constructing a supply chain knowledge graph (SCKG), with firms as nodes and inter-firm relationships as edges. Web search snippets are query-biased summaries returned with search results. We use them as a scalable first-pass evidence layer for LLM-based relationship extraction. We evaluate the pipeline in terms of extraction efficiency and coverage. For extraction efficiency, exhaustive full-text chunking discovers 19.8$\times$ more unique relationships than snippets, but requires 251.2$\times$ more input tokens and yields higher redundancy. For coverage, we use 130,685 Chinese firms as search seeds, covering Shanghai/Shenzhen-listed firms and large unlisted firms as of 2024. In the listed-firm subset, the resulting SCKG covers 7.2$\times$ more firms and 9.3$\times$ more relationships than the CSMAR disclosure-based benchmark, while revealing heavy-tailed degree patterns. Retained provenance metadata make the SCKG an auditable complement to disclosure-based databases.

Key knowledge for steel-industry volatile organic compounds (VOCs) governance is scattered across unstructured scientific literature, making it difficult to integrate process, pollutant, and control-technology evidence and increasing the risk of hallucination when general large language models (LLMs) answer low-frequency industrial questions. Here we developed Chat-ISV, a knowledge graph (KG) enhanced multi-agent Q&A system that parses a curated steel-industry VOCs literature corpus, constructs a Neo4j KG with 27180 nodes and 81779 semantic edges, and combines prompt-constrained extraction, chunk-centered topology optimization, multi-agent routing, source-backtracking retrieval, local literature retrieval, open-domain knowledge access, and interactive subgraph visualization. Benchmark tests and 400 expert blind evaluations showed that topology optimization reduced isolated nodes from 57% to 4.08% and that Chat-ISV achieved high factual reliability, with 96.93% precision, 72.63% recall, an F1-score of 0.830, and a mean score of 1.69/2.00. By converting fragmented environmental-engineering literature into traceable, queryable, and decision-support-oriented knowledge, Chat-ISV establishes a scalable environmental-informatics paradigm for reliable LLM deployment and intelligent pollution-control decision support in specialized industrial domains.

LLM-based multi-agent systems have been widely adopted for knowledge retrieval and report generation, synthesizing known information through web search and textual reasoning. However, many critical information tasks in supply chains are not simple one-shot queries: they are structural inference problems requiring multi-hop reasoning across complex, fragmented web resources. Questions such as \textit{``Which Tesla components use lithium from Australian mines?''} have no answer in any single document; answers must be computationally synthesized through the autonomous construction and analysis of dynamic knowledge graphs assembled from fragmented, heterogeneous sources. Moreover, such discovery processes must be uncertainty-aware: decisions depend not only on answers but on calibrated confidence in their reliability, traceable to source quality and reasoning consistency. To address this capability gap, we propose \textit{Helicase}, an autonomous multi-agent LLM system for uncertainty-guided supply chain knowledge graph construction. \textit{Helicase} decomposes high-level supply-chain queries into executable investigation plans, coordinates specialized web-search, reasoning, and coding agents through iterative verification loops, and incrementally constructs query-specific supply chain knowledge graphs with per-fact uncertainty annotations. Its three-layer uncertainty framework tracks uncertainty at the action, trajectory, and memory layers, enabling both structural inference and calibrated confidence assessment. To evaluate autonomous reasoning across the full complexity spectrum, we introduce SCQA (Supply Chain Query Assessment), a benchmark of 80 supply chain queries organized into four quadrants spanning single-hop to multi-hop inference under both high and low data visibility.

Synthetic data offers a promising solution to two persistent barriers in supply chain analytics: data scarcity and data privacy. However, for synthetic data to support operational simulation and decision-making, it must do more than reproduce the statistical distributions of real records, and also preserve the \emph{operational logic} that governs supply chain processes, including the temporal orderings, mathematical dependencies, hierarchical taxonomies, and conditional rules that make a record operationally plausible. We consider this logic as the ``physics'' of supply chain data. Existing tabular generative models are primarily optimized for distributional fidelity and downstream predictive utility, and therefore often generate records that appear statistically realistic but violate fundamental operational constraints. This paper introduces \textbf{\textit{TabKG}}, a knowledge-graph-guided framework for logically consistent synthetic supply chain tabular data generation. TabKG constructs a \textbf{\textit{Column Relationship Knowledge Graph (CR-KG)}} to represent data operational dependencies. It uses a multi-LLM ensemble with majority voting to propose candidate relationships from column metadata, validates these relationships against real data to remove hallucinated or unsupported edges, and then uses the validated CR-KG to guide generation. Specifically, TabKG compresses the original table into independent columns, generates these columns using a latent diffusion model, and deterministically reconstructs dependent columns according to the validated relationships, enforcing logical consistency by construction with respect to the discovered operational rules.

Biomedical knowledge graphs (KGs) treat disease associations as static facts, but temporal information is crucial for clinical reasoning, e.g., a symptom diagnostic of one disease at age 3 may imply a different disease at age 13. Existing KGs such as PrimeKG, Hetionet, and iKraph do not encode when a finding becomes clinically relevant over the course of a disease. This limits their usefulness for longitudinal clinical reasoning and retrieval augmentation. We introduce ChronoMedKG, a temporal biomedical knowledge graph that contains 460,497 evidence-linked triples (filtered from 13M raw extractions) covering 13,431 diseases. Each association is tied to temporal components like onset window or progression stage, which are backed by PMID-traceable evidence and a multi-signal credibility score. The graph is constructed through a disease-autonomous multi-agent pipeline in which multiple frontier LLMs independently extract knowledge from PubMed and PMC literature. Only those relations are kept that are supported by multi-model consensus, survive credibility filtering, as well as ontology alignment. ChronoMedKG scored 92.7% agreement against Orphadata and adds temporal grounding for 6,250 diseases absent from HPOA, Orphadata, and Phenopackets, including 1,657 Orphanet-coded rare diseases. We further introduce ChronoTQA, a benchmark of 3,341 questions across eight task types (six temporal plus two static controls), with a 12-question supplementary probe. Frontier LLMs lose roughly 30 points moving from static to temporal questions; ChronoMedKG retrieval rescues 47-65% of their long-tail failures, against 17-29% for HPOA-RAG. As such, ChronoMedKG provides a crucial temporal axis for retrieval-augmented clinical systems that was previously absent.

Integrating new data into knowledge graphs (KG) typically involves different tasks that are executed within workflows or pipelines There are many possible pipelines for a specific integration problem but there is not yet a general approach to evaluate the overall quality and performance of such pipelines to be able to determine the best choices. We therefore propose a new benchmark KGI-Bench to evaluate integration pipelines that ingest different kinds of input data into an existing KG. We evaluate pipelines by analyzing their output, i.e., the updated KG, with the three complementary quality metrics coverage, correctness and consistency. We also provide benchmark datasets (seed KG, overlapping input data of three formats, reference KG as a ground truth) for the movie domain. To demonstrate the applicability and usefulness of the proposed benchmark, we comparatively evaluate 12 pipelines and analyze their behavior across different input data formats and design choices.

An extraction schema should not reduce knowledge graph fidelity. On statistical CSV, however, it can. We study country-by-year time-series matrices, a common layout on open-data portals. In this setting, serialization format and schema constraints interact super-additively. Their joint effect exceeds the sum of independent effects by up to +1.180 (2x2 factorial, 6 datasets). Bootstrap 95% CIs are strictly positive on 4/6 datasets, with strongest evidence on wide Type-II matrices. More critically, a schema applied to a mismatched format can trigger catastrophic mismatch. Fact coverage falls below the unconstrained baseline on 4/6 datasets through entity inflation or extraction refusal. We call this observed pattern format-constraint coupling. Probing and token ablation support a surface-form anchoring explanation centred on column-name references. Controlled variants across format-schema pairings, GraphRAG hosts, and LLM families show the same direction within the measured scope; one LLM family shows only partial activation. The observation also has a diagnostic consequence. Three standard retrieval modes largely mask construction quality (delta <= 1pp), whereas direct graph access exposes gaps up to +47.6pp (p < 0.0001). To support fidelity-aware evaluation, we release CSVFidelity-Bench. It contains 15 datasets, 11 Type-II matrices, 4 Type-III tables, and 1,892 Gold Standard facts across 6 domains.

The exponential growth of global academic output has confronted researchers and AI agents with an unprecedented information explosion,'' where fragmented and unstructured knowledge organization impedes deep interdisciplinary integration. Current academic retrieval tools predominantly rely on superficial keyword matching or vector-space semantic retrieval, which lack the topological reasoning capabilities required to navigate complex logical connections. Agentic deep-research-based frameworks are often prone to logical hallucinations and consuming high inference costs. To bridge this gap, in this report, we introduce SciAtlas, a large-scale, multi-disciplinary, heterogeneous academic resource knowledge graph designed as a panoramic scientific evolution network. By integrating over 43M papers from 26 disciplines, and a total of 157M entities and 3B triplets, SciAtlas provides a structured topological cognitive substrate that dismantles disciplinary barriers and furnishes AI agents with a global perspective. Furthermore, we develop a neuro-symbolic retrieval algorithm featuring tri-path collaborative recall and graph reranking, achieving a seamless transition from simple semantic matching to deterministic association discovery. We also present key application directions of SciAtlas, including literature review, automated research trend synthesis, idea positioning, and academic trajectory exploration, to demonstrate that SciAtlas can serve as an effective cognitive map'' to empower the full loop of automated scientific research while significantly reducing reasoning costs. We have released the interfaces for KG retrieval and various downstream tasks in our GitHub repo.

Generating Knowledge Graphs (KGs) remains one of the most time-consuming and labor-intensive tasks for knowledge engineers, as they need to identify semantic equivalences between input data sources and ontology terms. While declarative solutions (e.g., RML, SPARQL-Anything) have helped to generalize this process, aligning input schema elements with ontology terms still involves intricate transformations and requires considerable manual effort. With the advent of Large Language Models (LLMs), there is growing interest in leveraging their capabilities to assist KG engineers. Although some studies have explored using LLMs to automate KG construction, there is still no standardized framework for assessing how effectively they establish correspondences between data schemes and ontology concepts. Therefore, in this paper, we propose BLINKG, a benchmark designed to evaluate the mapping capabilities of LLMs in constructing KGs from heterogeneous data sources. The benchmark includes a set of scenarios with increasing complexity, based on real-world use cases. We conduct an extensive experimental evaluation of several stateof-the-art LLMs using BLINK and observe that they already offer promising solutions. However, their performance remains limited in complex scenarios. Thanks to this benchmark, we can already assess the current capabilities of LLMs for KG construction. Additionally, we define a set of requirements for achieving (semi)automated (LLM-driven) KG construction, opening new research lines in this area.

Accurate vessel estimated-time-of-arrival forecasts are critical for port operations and decarbonization, yet global-scale travel-time prediction remains difficult without costly contextual data. Herein, I present a methodology for constructing a historical maritime knowledge graph using only Automatic Identification System (AIS) data. First, segmented trajectories are extracted from noisy AIS data using a Gaussian-mixture-model-based preprocessing pipeline. The graph is then constructed by iteratively processing the trajectories and storing speed distributions stratified by vessel type, time of travel, and direction of travel; the resulting global graph comprises 5,433 geohash-3 nodes and 12,334 edges. The graph can be queried to retrieve travel-time predictions between any two location via a hierarchical, priority-based system that uses historical statistics with principled fallback. On a temporally held-out test set, median RMSE is 22.75 min (segment-level) and 30.90 min (trajectory-level), with 69.1% of trajectories within 20% of actual arrival time. On a second external test set, median RMSE is 27.36 min (segment-level) and 37.46 min (trajectory-level), with 62.1% of trajectories within 20%. These results corroborate the promise of our method, enabling global travel-time prediction and providing a strong foundation for just-in-time arrival planning and emissions reduction.

The preservation and interpretation of cultural heritage increasingly rely on digital technologies, among which Knowledge Graphs (KGs) stand out for their ability to structure vast amounts of data. However, the construction and expansion of these KGs often face challenges due to the diverse and complex nature of cultural heritage information. In this paper, we propose a novel approach for extending KG resources in the domain of cultural heritage, which we applied to French data. First, we introduce a new knowledge graph in the domain of French cultural heritage, WJoconde, which is distinguished by its multimodality as it integrates both textual and image information of the entities. We further introduce three variants of WJoconde to facilitate downstream research, such as Knowledge Graph Completion (KGC). We also built a comprehensive benchmark for KGC methods on our dataset. Second, we propose a new framework for extending cultural heritage KGs using multi-modal approaches leveraging Large Language Models (LLMs) and Vision-Language Models (VLMs), which includes automated data extraction from unstructured resources combined with a special validation pipeline for grounding the output of both models, to further extend WJoconde. Our results show that by integrating the rich text and image information in cultural heritage data, we can efficiently enhance KGs with high reliability. We open-source all code and benchmark datasets with text and images, as well as the original data with an interactive access point

Existing LLM-driven knowledge graph (KG) construction methods predominantly employ stateless batch processing pipelines, exhibiting structural deficiencies in cross-chunk semantic relation capture, entity disambiguation, and construction process interpretability. These limitations undermine KG quality, retrieval precision, and deployment trust in high-stakes domains. We propose RAGA (Reading And Graph-building Agent), an LLM-based autonomous KG construction and retrieval fusion framework. RAGA provides an atomic toolset supporting full KG lifecycle CRUD operations and embeds a Read-Search-Verify-Construct cognitive constraint into a ReAct tool loop. A KG-vector synchronization mechanism enables hybrid symbolic-vector retrieval, while evidence-anchored verification links every knowledge entry to its source text for auditable provenance. Preliminary experiments on a subset of the QASPER scientific QA dataset indicate that RAGA's fusion retrieval outperforms zero-shot baselines, with KG integration providing measurable gains in both answer and evidence quality. The framework design and experimental baseline serve as a reference for agent-driven autonomous KG construction.

Security knowledge graphs can provide computable external memory for security agents, but constructing them from long-form cyber threat intelligence (CTI) remains difficult: LLMs often lack grounded security-domain knowledge, and end-to-end document-to-graph training is hard to supervise with cheap, stable rewards. We present GRID (Graph Representation of Intelligence Data), an end-to-end framework for security text knowledge graph construction. GRID first builds security-domain supervision from CTI articles by creating traceable article-graph alignments through graph extraction and knowledge-graph-conditioned text revision. It then turns document-to-graph learning into a scripted task bank combining four-option multi-select questions with triple-level regex matching targets, yielding more stable task-specific rewards than repeatedly scoring full graph outputs with an LLM judge. Using this supervision pipeline, we train two Qwen3-4B-Instruct-2507-based 4B extractors: a primary Task-bank Reward model and a secondary End2End Reward model with LLM-as-judge precision/recall rewards. On 249 CTI articles from GRID, CASIE, CTINexus, MalKG, and SecureNLP, the Task-bank Reward model with the ontology-guided GRID extraction pipeline reaches 84.62% source-averaged precision, 64.91% source-averaged recall, and 68.53% Avg F1, achieving the best source-averaged recall and near-top Avg F1 with lower token usage and deployment cost. The End2End Reward model reaches 76.91% precision, 53.85% recall, and 58.06% Avg F1. Further analyses show that task-bank rewards can be built once offline and reused across later post-training runs, outperforming online End2End LLM-as-judge reward and weaker alternatives such as Choice-only Reward and End2End SFT without RL.

Metacognition-the ability to monitor one's own knowledge state, spot gaps, and autonomously fill them--remains largely absent from modern AI. Here, we present MetaKGEnrich, a fully automated pipeline that endows large language model (LLM) applications with self-directed knowledge repair. The system (i) builds knowledge graphs from a seed query, (ii) detects sparse regions via seven graph metrics, (iii) has GPT-4o generate targeted questions, (iv) retrieves web evidence with Tavily and ingests it into Neo4j, and (v) re-answers the query with GraphRAG for GPT-4 to evaluate improvement. Tested on 30 queries from each of three widely-used datasets: Google Research Natural Questions, MS MARCO, and Hot-potQA. MetaKGEnrich improved answer quality in 80% of HotpotQA questions, 87% of Google Research Natural Questions and 83% of MS MARCO questions, while preserving well-supported regions. This proof of concept demonstrates how topological self-diagnosis plus targeted retrieval can advance AI toward humanlike metacognitive learning.

Law enforcement reports contain structured fields and written narratives. However, many incident facts that are needed for review, police training, and investigations are in natural language and require manual reading. We propose a framework using symbolic methods for converting narratives into evidence-linked facts. Our objective is to measure the value of narratives to recover incident details only from the unstructured text and build temporal graphs with time cues and domain axioms. We achieve this by redacting personal identifiers, semantic parsing, predicate mapping to ontology, and reasoning. We evaluate the symbolic approach on 450 property crime reports and a short human review. Of the extracted events from the system, 54.1% had a confidence score of at least 0.80 and 93.7% were mapped through the PropBank--VerbNet--WordNet semantic path. 100% agreement was reached on incident initiation, stolen items, and temporal cues and lower agreement for forced entry interpretation.

Cybersecurity Knowledge Graphs (CKGs) unify diverse Cyber Threat Intelligence (CTI) sources into structured, queryable formats, offering scalable solutions for automating proactive and real-time security responses. Their increasing adoption has significantly enhanced the workflow and decision-making efficiency of security professionals. However, constructing CKGs requires extracting entity-relation triples from unstructured CTI reports, a task hindered by complex report structure, domain-specific language, and semantic ambiguity. As a result, existing pipeline-based approaches often suffer from error propagation, reducing extraction accuracy and limiting generalizability. This paper introduces the Context-aware Threat Intelligence Knowledge Graph (CTiKG) framework, a pipeline architecture designed to accurately extract and classify threat entities and their relationships from CTI reports. CTiKG incorporates hybrid NLP models that leverage SecureBERT+ contextual embeddings and expert knowledge from a domain ontology to reduce misclassifications and mitigate cascading errors. Experiments on the DNRTI-AUG-STIX2 dataset, which comprises 21 entity types aligned with STIX 2.1, demonstrate significant improvements over state-of-the-art baselines, yielding 3-4% gains in NER and up to 8% in RE performance, based on precision, recall, and F1-score. Additional validation on DNRTI and STUCCO benchmarks confirms the framework's robustness and practical applicability. All datasets, including the curated DNRTI-AUG-STIX2, are released on GitHub to foster reproducibility and further research.