Hierarchical Classification

Global video geo-localization aims to infer the geographic location of a video worldwide, evaluating performance across four geographic hierarchies: city, state/province, country, and continent. Existing methods typically employ one-way uniform sampling to process video frames and train independent classifiers for each hierarchy, which leads to the loss of key geographic cues and prediction conflicts between hierarchies, especially for complex multi-shot edited videos. To address these limitations, we propose GeoGAT, which integrates bidirectional temporal sampling with graph attention networks (GATs). Specifically, GeoGAT extracts forward and offset-reversed frame sequences to construct complementary spatiotemporal features. These fused features are then fed into a predefined geographical hierarchy graph, where GATs perform structure-aware message passing, while a dual-constraint mechanism prunes predictions to eliminate cross-hierarchy conflicts. We construct GeoGAT10k, comprising 9,720 multi-shot edited videos from 166 cities worldwide, specifically to benchmark generalization ability on complex video structures. Experimental results on CityGuessr68k and GeoGAT10k demonstrate that GeoGAT eliminates hierarchical conflicts entirely and achieves state-of-the-art performance across all four geographic hierarchies. On CityGuessr68k, GeoGAT outperforms the strongest baseline, evaluated under both classification and retrieval protocols, by 2.6 percentage points at the city level. On the more challenging GeoGAT10k with multi-shot edited videos, the accuracy improvement exceeds 24 percentage points, validating strong generalization to complex real-world scenarios.

Tironian notes are generally regarded as the first Latin shorthand system and are notable for their large, fine-grained symbol inventory. Their high visual similarity and large class set make manual reading time-consuming, leaving manuscripts that contain Tironian notes inaccessible to many researchers. Automatic recognition is also challenging because models must distinguish subtle differences in stroke shape and sign structure while realistic training data remain scarce. However, standard flat classifiers do not explicitly use visual or structural relations between related signs. This paper investigates whether structural relationships between Tironian notes can support automatic recognition. We use the Supertextus Notarum Tironianarum (SNT) by Martin Hellmann, which provides idealized sign forms and a hierarchical organization of Tironian notes. We compare flat ResNet18, ConvNeXt, Shifted Window Transformer (Swin), and Vision Transformer (ViT) classifiers with Hierarchical Deep Convolutional Neural Network (HD-CNN)-style coarse-to-fine models and hierarchy-aware routing models based on visual class cleaning and similarity-based re-clustering. The models are evaluated on handwritten samples and manuscript-domain samples from Vergilius Turonensis, both with and without limited few-shot adaptation to the manuscript domain. The results show that the relative performance of flat and hierarchical models depends on adaptation. On Vergilius Turonensis, HD-CNN achieves the best non-adapted Top-1 result with 45.43%, while flat classification reaches the best Top-1 result after few-shot adaptation with 82.09%. Overall, the results indicate that hierarchical structure can support Tironian note recognition, especially under non-adapted conditions.

Bone-marrow cytology is inherently structured: each cell belongs to a hematopoietic lineage, and many cell types lie on ordered maturation trajectories. Standard flat classifiers ignore this structure, treating a mild same-lineage confusion the same as a severe cross-lineage mistake and predicting only discrete labels. We propose HemaHier, an ordinal-hierarchical prediction head for a frozen or lightly adapted cytology foundation model. Its central component is a chain-conditioned maturity score that reads a single maturity value under a per-chain query, supervised only on biologically valid healthy chains, while dysplastic and off-chain cell types remain classes but are excluded from maturity supervision. Fine and lineage predictions are coupled through a shared posterior that guarantees hierarchical consistency, and a staged objective first stabilizes recognition, then adds lineage and maturity supervision. On three bone-marrow datasets under a shared ontology, HemaHier achieves competitive recognition while reducing biologically severe errors and adding a within-lineage maturity ordering that flat classifiers lack. Code is available at https://github.com/xmindflow/HemaHier.

Many synthetic-image detectors produce accurate predictions but offer limited insight into how those decisions are formed. This paper introduces Hierarchical Channel Stacking (HCS), a compact framework for AI-generated image detection that converts intermediate CNN activations into a structured 60-dimensional representation organized across three progressively deeper backbone stages. HCS uses per-channel Level-1 classifiers and a Level-2 aggregator to produce image-level predictions while preserving explicit hierarchical structure for analysis. On a benchmark spanning GAN and diffusion generators, HCS achieves 86.7% accuracy and 86.7% macro-F1 on the held-out test set. Stage ablation shows that the full three-stage system outperforms reduced single-stage and two-stage variants, indicating that the hierarchy carries complementary predictive information. Stage-level contribution analysis further shows that, in the analyzed detector setting, fake GAN and fake diffusion images exhibit distinct stage-level contribution profiles. These results position HCS not simply as a compact detector, but as a structured framework for studying how synthetic-image detectors assemble evidence across representation levels.

Federated learning enables privacy-preserving collaboration across distributed devices without centralizing local data. However, clients may differ not only in data distributions but also in domain knowledge and annotation capabilities. In this paper, we introduce label granularity skew, a new form of statistical heterogeneity in federated hierarchical classification, in which clients provide taxonomy-consistent labels at different levels of detail within a shared class hierarchy. To model this heterogeneity, we generate client-specific local label hierarchies using a probabilistic relational neighbor classifier and construct a WordNet-guided hierarchy via silhouette score-based coarsening. Our analysis shows that strongly coupled hierarchical models are sensitive to incomplete supervision, while the conditional softmax classifier is more robust. Based on this insight, we propose Branch-wise Decoupled Fine-Tuning (BDFT) and its federated version, FedBDFT, which fine-tune branch-wise classifiers and aggregate them through federated optimization. Experiments on CIFAR-100, TinyImageNet, and ImageNet show that FedBDFT substantially improves robustness under severe label granularity skew, with average gains of 27.9% and 56.4% at skewness levels of 0.6 and 0.9, respectively. Zero-shot results further indicate that FedBDFT better preserves hierarchical representations for unseen fine-grained classes. These findings demonstrate its effectiveness for federated hierarchical classification with heterogeneous label granularities.

The increasing specialization of scientific research challenges existing classification systems, which provide effective representations of broad disciplines and research topics but often fail to capture the fine-grained conceptual structure of contemporary science. Author keywords offer greater specificity, but their fragmentation, redundancy, and terminological variability limit their use as stable units of knowledge organization. We introduce SCALE (Scientific Concept Aggregation via LLMs and Embeddings), a framework that extends the OpenAlex taxonomy with a new level of scientific Concepts below Topics. Rather than treating keywords as isolated descriptors, SCALE organizes semantically related terms into coherent and interpretable conceptual units and integrates them within the existing disciplinary hierarchy. The framework combines scientific text embeddings, large language models, and graph-based community detection to construct this additional layer at scale. The resulting taxonomy enables scientific literature to be read through an intermediate conceptual level between broad research topics and individual documents. This perspective provides a more detailed representation of how scientific knowledge is structured, specialized, and connected across disciplines. By transforming heterogeneous author terminology into reusable hierarchical units, SCALE offers a foundation for fine-grained scholarly classification, scientometric analysis, research monitoring, and future ontology development.

A closed-set detector for autonomous driving must assign every object one of a fixed set of labels. On an object outside that set (a horse-drawn carriage, road debris, livestock on a rural road) it can only force a confident but wrong specific label or drop the object. Prior work in this series replaced the flat label set with a hierarchical taxonomy and a runtime abstraction rule, but evaluated it only on the boxes a closed detector already produces. This paper takes the layer open-world: we place taxonomic abstraction on top of class-agnostic region proposals so objects the closed detector never boxes can still be classified or flagged; we report a feasibility study of three open-world signals (class-agnostic segmentation, appearance-based out-of-distribution scoring, monocular depth) that shows why no single 2D cue suffices and how they compose; and we run the evaluation the earlier papers could not, a ground-truth leave-classes-out benchmark on real annotated objects. Holding out seven COCO classes and classifying their 235 ground-truth crops, a flat closed head emits a confident wrong specific label 100% of the time (37% of them in the wrong super-category, e.g. an animal named as a vehicle), whereas the hierarchical layer emits zero confident wrong specific labels and safely handles 94% of the objects (a correct super-category, or an explicit UNKNOWN OBSTACLE). We are explicit that this is a safety result, not a specificity one: the correct super-category is recovered only 26% of the time and the remaining 69% are conservatively flagged unknown. The contribution is an open-world perception layer that never makes a confident categorical mistake on an out-of-vocabulary object, together with an honest account of its cost.

Accurate chest X-ray interpretation is inherently hierarchical. Clinical decisions depend not only on what abnormality is present but where it is situated, requiring reasoning from broad anatomical systems down to specific pathological findings. Yet existing automated systems largely treat this as a flat classification problem, failing to capture inter-level dependencies or enforce coherence between coarse and fine predictions. We propose CHASE (Classification with Hierarchical Analysis and Structured Enforcement), a unified single-stage framework that mirrors radiologists' coarse-to-fine reasoning through a clinically driven three-level taxonomy of 9 anatomical regions, 17 sub-regions, and 28 pathological findings. CHASE jointly optimizes multi-level supervision, cross-level probability alignment, and a hierarchy-violation penalty within a shared Vision Transformer backbone. This ensures that fine-grained findings are anatomically supported by their coarser-level context rather than predicted in isolation. Experiments demonstrate that CHASE outperforms flat and hierarchical baselines across all levels while achieving superior probabilistic hierarchy consistency, with level-wise attention maps confirming anatomically grounded predictions. Code is available at: https://github.com/yejix-ai/CHASE.

Declining insect populations make reliable biodiversity monitoring increasingly urgent, yet monitoring of insect biodiversity is hampered by a lack of standardised data and by costly and time-consuming manual identification by expert entomologists. Deep learning-based image classifiers, processing data from automated non-lethal camera traps, have the potential to transform and scale insect biodiversity monitoring. However, challenges remain in acquiring expert-annotated datasets, developing model architectures that generalise well across diverse taxonomic levels and training models on highly imbalanced data. Hierarchical data also benefits from designing models that default to higher-confidence, coarser-level predictions, when uncertain about finer taxonomic levels. In this paper we address these challenges with a deep learning-based hierarchical classification model. First, we present a manually curated, long-tailed dataset of around one million images of insects, extracted from 1,801 camera-trap video recordings and annotated with a five-level, 34-class hierarchy. Further, we adapt a hierarchical classification model architecture to a five-level variable-depth hierarchy, with class-balanced weighting. Our model improves on non-hierarchical classifiers by leveraging biological taxonomy to extract granularity-specific visual features and makes hierarchy-consistent predictions to the deepest taxonomic level that meets a confidence threshold (T = 0.6). Our model achieved a per-level accuracy of 80-99% on test data, across five levels of hierarchy. Furthermore ...

Many fine-grained recognition tasks contain hierarchical labels such as order, family and species. Although this supervision should be beneficial, jointly optimising all levels often leads to unstable training because coarse and fine classifiers impose inconsistent gradients on the shared backbone. This hierarchical gradient conflict prevents the model from learning a coherent coarse-to-fine representation. In this paper, we propose FlexiGrad, a simple and parameter-free method that regulates gradient interactions during backpropagation. FlexiGrad removes only the harmful conflicting component when tasks disagree and reinforces the shared direction when they partially agree through a smooth hierarchy-aware weighting function. This produces stable optimisation and preserves both global structure and fine-grained discriminative cues. FlexiGrad integrates into existing architectures without modification while improves multi-granularity accuracy on CUB-200-2011, FGVC-Aircraft and Stanford Cars. The code will be available at PRIS-CV/FlexiGrad.

Lung ultrasound (LUS) is a bedside tool for assessing pulmonary edema in patients at risk due to heart failure or impaired kidney function. However, automated LUS analysis remains challenging because of speckle noise, imaging artifacts, and operator-dependent acquisition variability. In this work, we present a deep learning framework for multi-class LUS video classification that explores two components: hierarchy-aware training, and anatomy-guided learning. Starting from a strong baseline, we introduce hierarchical training strategies and then introduce pleural line mask supervision to guide model attention toward anatomically relevant regions. We study four clinically relevant classes--healthy, B-lines, consolidations, and mixed B-lines with consolidations--using an open-access dataset of 1,886 videos from 219 patients, evaluated with patient-level five-fold cross-validation. Results show that hierarchy-aware training improves pathological separation relative to flat classification, while mask-guided attention supervision achieves the highest mean macro-F1 of 65.7% and produces more localized attention patterns. Transfer experiments on the external COVID-BLUeS dataset further show competitive and parameter-efficient adaptation while preserving pleural-focused attention behavior. These findings suggest that combining clinically structured objectives with anatomy-guided supervision is a practical approach to robust, interpretable LUS video analysis. Code and model implementations are available at https://github.com/Alya-Almsouti/LUS-video-classification.

We propose and evaluate three hierarchical ensemble setups for zebrafish phenotype classification from embryo images. In all setups, stage 1 uses a single four-class classifier to assign images to one of the exclusive phenotypes: Normal, Chorion, Dead, or Other. Images classified as Other are then processed in stage 2, where the ensemble design differs across setups: a single multi-label classifier, two specialized multi-label classifiers, or an ensemble of binary classifiers. We compare these setups using three backbone architectures: ResNet18, ViT, and ConvNeXt. Overall, ConvNeXt achieves the best performance across setups, while the specialized hierarchical ensemble in setup 2 provides the best balance in terms of F1-score. The results show that the proposed specialised hierarchical ensembles are effective for zebrafish phenotype recognition, and suggest that ConvNeXt is particularly useful backbone model.

Classifying cybersecurity vulnerabilities using the Common Weakness Enumeration (CWE) taxonomy is challenging due to extreme class imbalance and strong hierarchical dependencies among weakness categories. Although oversampling techniques such as Synthetic Minority Oversampling Technique (SMOTE) and Adaptive Synthetic Sampling (ADASYN) are widely adopted to mitigate class imbalance, their effectiveness for hierarchical CWE text classification remains largely unexplored. This paper proposes a Hierarchy-Aware RoBERTa framework that explicitly incorporates CWE structural information through learnable parent-class embeddings, preserving taxonomic consistency. Our experiments demonstrate that synthetic interpolation in high-dimensional embedding spaces violates the inherent parent-child constraints of the CWE hierarchy, offering only marginal benefits for classical ML models while consistently degrading deep learning architectures. Evaluated on a CWE Research Concept dataset, the proposed model achieves a weighted F1-score of 0.76 without data augmentation, outperforming all baselines with notable gains on minority classes, including the Class category whose F1-score improved from 0.40 to 0.60 over the BERT baseline. Our results suggest that hierarchy-aware representation learning is a more principled alternative to oversampling for structured vulnerability classification.

Tasks such as customs tariff classification, export control categorization, and standards-based equipment coding require assigning an input instance to a fine-grained class under an explicit regulatory hierarchy. Unlike standard text classification, the correct label in these tasks is not determined by semantic similarity alone, but by rule-defined boundaries, threshold conditions, exclusion clauses, definitions, and local exceptions. As a result, two highly similar inputs may require different labels, while a retrieved passage that appears relevant may still be inapplicable under the governing rules. Existing flat classifiers, hierarchical text classification methods, and retrieval-augmented LLM systems are not designed to jointly enforce hierarchical validity, rule consistency, and fine-grained boundary reasoning. In this paper, we formulate this setting as regulation-driven fine-grained hierarchical classification, where an external instance must be assigned to a fine-grained class through a valid path in a regulatory hierarchy and supported by auditable evidence. We construct four benchmark datasets from representative regulation-intensive scenarios and validate the annotations through an expert-in-the-loop process. We further propose a constraint-aware hierarchical search framework that converts regulatory documents into a searchable tree, retrieves only valid local candidate nodes, and uses structured regulatory fields with evidence snippets to guide each next-hop decision. Experiments show that our method achieves the best mean accuracy on all four datasets and provides interpretable decision paths, with the largest gains on cases involving fine-grained neighboring categories and rule-based boundary conditions.

Clinical code prediction maps unstructured discharge summaries to ICD-10-CM leaf codes in a large, sparse, and deeply hierarchical label space. Most systems treat the task as flat multi-label classification, scoring codes independently and providing limited training signal for rare labels. We propose a graph-constrained traversal policy that formulates ICD prediction as a finite-horizon decision process over a pruned code hierarchy. A single language model descends the graph level by level, selecting valid child nodes until billable leaf codes are reached. This converts extreme multi-label prediction into sparse, hierarchy-aware subset decisions while guaranteeing structurally valid outputs. On MIMIC-IV discharge summaries, our best supervised policy, SFT-1+, achieves 0.709 micro-F1 on a curated 50-code subset and 0.527 micro-F1 on the full 15,761-code space, outperforming flat baselines including CAML, LAAT, and PLM-ICD. In the full setting, SFT-1+ improves over the strongest flat baseline by 0.044 micro-F1 and 0.157 macro-F1, suggesting that graph-constrained decomposition mitigates the rare-code bottleneck. A controlled factorial study evaluates architecture, training algorithm, and data budget. Across both scales, one shared policy matches a three-specialist cascade while avoiding its context-window overflow on 28-32% of full-space test notes. Increasing supervised trajectory data is the only intervention that consistently improves performance, while GRPO reinforcement learning provides no benefit over supervised continuation with matched data. These results show that simple graph-constrained policy learning can outperform more complex flat, cascaded, and reinforcement-learning alternatives for extreme clinical code prediction.

Assigning Common Weakness Enumeration (CWE) categories to Common Vulnerabilities and Exposures (CVE) records remains an important but largely manual step in vulnerability analysis. We study this task as a text classification problem and compare two modelling choices: a \emph{multi-class} formulation that predicts a single CWE per CVE and a \emph{multi-label} formulation that allows multiple assignments. Three transformer encoders (BERT Base, SecureBERT, and CySecBERT) are evaluated on three nested label spaces (83, 47, and 25 classes). Multi-class training achieves higher macro-F1 across all settings, although the gap to multi-label narrows from 21 to 2 percentage points as the label space shrinks. Post-hoc threshold optimisation on the multi-label side closes this gap on the 25-class setting. Confusion analysis shows that the dominant misclassification patterns follow the CWE hierarchy and are shared across all three encoders (Pearson $r > 0.92$), which suggests that the error structure is driven more by taxonomy design than by encoder choice. A hierarchy-relaxed evaluation that forgives within-family confusions raises macro-F1 from ${\sim}$81% to ${\sim}$90%, indicating that strict metrics understate branch-level classifier quality. CySecBERT achieves the strongest results overall, with statistically significant gains concentrated in the multi-label setting.

Accurate and efficient classification of thoracic diseases in chest X-ray (CXR) images is crucial for timely diagnosis and treatment. However, the presence of multiple pathologies with overlapping visual characteristics poses significant challenges for automated classification systems. In this study, we propose two novel hierarchical multi-label classification techniques, namely the loss-based and logit-based methods, to address these challenges by leveraging the hierarchical relationships among different thoracic pathologies. The loss-based technique integrates hierarchical information directly into the optimization process, while the logit-based method adjusts the predicted probabilities of each class based on its parent class in the disease taxonomy. We evaluate the performance of both techniques using three large-scale CXR datasets: CheXpert (224,316 CXRs), PADCHEST (160,000 CXRs), and NIH (112,120 CXRs). The experimental results demonstrate significant improvements in accuracy, AUC, and F1 scores compared to the baseline method across various pathologies. The logit-based and loss-based methods improve accuracy by 12% and 11%, AUC by 13% and 10%, and F1 scores by 24% and 12%, respectively compared to the baseline. These results represent a substantial improvement over the baseline method. Furthermore, we conduct a comprehensive statistical analysis to validate the robustness and reliability of the proposed techniques. The integration of domain-specific hierarchical knowledge not only enhances the classification performance but also provides a more interpretable output for clinical decision support. Our findings highlight the potential of hierarchical multi-label classification in advancing computer-aided diagnosis systems for chest radiography.

FaceMesh2HPO is a framework for classifying facial phenotypic descriptors aligned with the Human Phenotype Ontology (HPO) to support clinical diagnosis. Using annotations from 124 clinicians across 10 disorders (107 HPO terms) combined with non-syndromic controls, we generated 3D facial meshes (478 landmarks) from 2D images and trained a hierarchical PointNet-based pipeline with cascading classification and feature elimination. The best models, incorporating 3D meshes, facial outline, and demographic metadata, achieved AUROCs between ~0.55 and ~0.89, with higher performance at parent nodes than leaf terms. External validation showed variable generalizability across disorders. Results demonstrate that hierarchical modeling of 3D facial geometry enables interpretable, ontology-linked phenotype classification, though performance on rare leaf terms remains limited. Improved data diversity and feature selection strategies are needed to enhance robustness and clinical utility.

We present the AI Wizards submission to EXIST 2026 for multimodal sexism identification in memes. The task is composed of three, increasingly harder subtasks. We model them hierarchically as conditional soft-label prediction over empirical annotator distributions. Our system maps fixed Gemini Embedding 2 vision-language representations through a lightweight Gated MLP trained with KL divergence and homoscedastic uncertainty weighting. Our submissions ranked first on Task 2.3 and fourth on Tasks 2.1 and 2.2 on the official Soft-Soft leaderboards. The code is available at https://github.com/NLP-AI-Wizards/EXIST-2026

This technical report describes our system for Task 1 of the DCASE 2026 Challenge, which aims to classify heterogeneous audio recordings according to the Broad Sound Taxonomy (BST). The task requires both accurate second-level prediction and consistency with the top-level taxonomy. Our system is built on CLAP-based audio-text representations and is improved along three strategies: expanding the training set with a filtered subset of BSD35k, enhancing acoustic modeling with feature-specific branches, and refining predictions using hierarchy-aware classifiers and KNN-based post-processing. Among the acoustic features considered, the log-STFT branch provides the strongest single-model performance. With KNN-based post-processing, our best single system achieves a hierarchical F1 score (Hier. F1) of 80.84% on the BSD10k-v1.2 set under the same evaluation protocol as the baseline. We further construct ensemble systems by combining models with complementary acoustic features and classification heads, achieving Hier. F1 scores of 81.25% and 81.18%, respectively.

Modern time-domain surveys such as the Zwicky Transient Facility (ZTF) generate hundreds of thousands of alerts each night, making real-time decisions for follow-up observations a central challenge in time-domain astronomy. Robust early classification is crucial for making informed decisions, but is hindered by sparse light curves and degeneracies between classes. In this work, we leverage multimodality to substantially improve real-time classification and demonstrate the practicality of our approach by deploying our model on the ZTF alert stream. Building on the Online Ranked Astrophysical CLass Estimator (ORACLE), we introduce the ORACLE-2 models, which combine light curves, metadata, and images for real-time hierarchical classification. Using both real and simulated datasets, we show that incorporating additional modalities consistently improves classification performance. On observations from ZTF's Bright Transient Survey, our best-performing model, ORACLE-2 Omni, achieves a macro F1 score of 0.73 -- an improvement of up to 11% over models using light curves and metadata alone, and up to 40% over light-curve-only models, with the strongest gains realized at early times. To demonstrate applicability to the Legacy Survey of Space and Time, which will increase alert volume by more than an order of magnitude, we train a light curve + metadata variant on the simulated ELAsTiCC dataset. This model achieves a macro F1 score of 0.88, an improvement of up to 13% over the light-curve-only variant, matching the performance of other state-of-the-art models. Finally, we quantify the trade-offs between performance and throughput, identifying regimes where multimodal approaches offer the greatest benefit. These results show that combining multiple modalities improves early-time classification, enabling more effective triage of high-volume alert streams for current and future time-domain surveys.

As computing education expands beyond traditional programming into operational domains such as systems administration and command-line environments, existing pedagogical frameworks struggle to capture a dimension that is critical in these contexts: the real-world consequences of learner actions. Existing cognitive taxonomies classify learning objectives by mental operations but do not account for system impact, leaving a critical gap in command-line education where conceptually simple commands can have severe consequences. This work presents CogTax, a four-level cognitive taxonomy that integrates two dimensions: cognitive complexity, derived from Bloom's Revised Taxonomy, and operational impact, which distinguishes observational, reversible, structural, and administrative operations. The four progressive levels range from safe read-only inspection to advanced system management requiring integration of multiple abstract models. Then, the taxonomy level is defined as the maximum of these dimensions, ensuring that both conceptual understanding and operational awareness are addressed. CogTax gives instructors a principled framework for sequencing course material and calibrating assessment difficulty, and gives students an explicit reference for self-assessment and gap identification. To demonstrate that taxonomy levels are automatically assignable, making the framework scalable without manual expert annotation, a classifier that combines syntactic representations derived from abstract syntax trees with semantic embeddings is trained. Evaluated on 585 expert-annotated Linux/bash commands, this combined approach achieves 89% accuracy, outperforming either representation alone, and demonstrates cross-language extensibility through structural equivalences across command languages.

Whole slide image (WSI) analysis is central to computational pathology, with multiple instance learning (MIL) emerging as the standard pipeline for slide-level diagnosis. However, conventional approaches formulate WSI diagnosis as a flat classification task over discrete labels, contradicting the inherently hierarchical, coarse-to-fine nature of clinical reasoning. Although recent hierarchical classifiers and vision-language models (VLMs) have sought to address this structural gap, they either fail to capture semantic continuity between related diagnoses or suffer from unconstrained text generation that produces taxonomic hallucinations and parent-child label violations. To address these limitations, we propose TaxoMIL, a taxonomy-constrained framework that reformulates WSI diagnosis as a multi-granularity text generation task. TaxoMIL utilizes a dual-head Transformer decoder to generate coarse- and fine-level diagnostic text, and introduces taxonomy-guided objectives that explicitly structure the label embedding space and strictly ground slide-level visual representations within the clinical taxonomy. Extensive experiments across three diverse WSI datasets demonstrate that TaxoMIL consistently outperforms state-of-the-art MIL classifiers and VLM-based generative methods, yielding accurate and hierarchy-aware diagnostic predictions. The code is released at https://github.com/QuIIL/TaxoMIL

Automated classification of marine species from underwater imagery is essential for scalable ocean biodiversity monitoring and conservation policy. Existing approaches struggle with severe domain shift across collection platforms, fine-grained visual similarity between closely related species, and uneven annotation granularity, where many specimens can only be identified to genus or a coarser taxonomic rank. We present a taxonomy-aware deep learning framework that aligns both the training loss and the inference rule with the hierarchical structure of biological classification, combining a taxonomy-weighted loss, minimum-risk Bayesian inference, multi-scale feature encoding, and independent per-rank classification heads. Evaluated on the FathomNet 2025 dataset1 (79 marine classes across seven taxonomic ranks), the system achieves a mean taxonomic distance of 1.581, within 3% of the 1st-place solution (1.535), with the largest gains from metric-aligned inference and simple, decoupled components that generalize better than learned dependencies under distribution shift.

Multimodal contrastive learning has enabled zero-shot visual classification by aligning images with textual categories. However, in hierarchically structured label spaces, existing methods often produce predictions that are inconsistent across taxonomic levels. For example, a model may predict a fine-grained category whose parent category contradicts its simultaneously predicted higher-level label. By analysis, the issue originates from false negative labels when contrastive comparison involves multiple taxonomic levels. To this end, we propose to restrict contrastive comparisons to categories within the same taxonomic level. In addition, we adopt a group-balanced design, ensuring each taxonomic level receives adequate optimization. As a result, the proposed framework improves both hierarchical consistency and classification accuracy from coarse to fine granularity. We train our model with TreeOfLife-10M based on BioCLIP and evaluate it across multiple hierarchical classification benchmarks, where the model demonstrates significantly improved hierarchical consistency in both Euclidean and hyperbolic spaces. Notably, on iNaturalist 2021 (iNat21), our method improves average accuracy across levels by 30.47% over the baseline, highlighting its effectiveness for hierarchical zero-shot classification.

The open-source ecosystem on GitHub lacks a systematic hierarchical taxonomy of software repositories. GitHub Topics, the dominant organizational mechanism, is flat, inconsistent, and covers only 67% of projects. We present ATLAS, the first framework that automatically constructs a hierarchical taxonomy for software repositories and classifies projects into it end-to-end. By combining LLM global knowledge with real repository distributions, ATLAS proposes meaningful splitting dimensions and iteratively corrects those that fail to accommodate real projects. A Designer Agent proposes splitting dimensions while a Classifier Agent assigns repositories; a self-corrective refinement loop uses classification failures to drive dimension revision through escalating strategies. We evaluate ATLAS on 54,387 GitHub repositories against six baselines spanning four paradigms, two downstream tasks, and three model families. On a stratified 2,001-repository benchmark, ATLAS achieves a Taxonomy Quality F-score (TQF) of 83.13%, outperforming the best baseline by 15 percentage points (on the full 54k corpus the approximate TQF is 73.0%, a gap driven by Path Granularity's all-or-nothing scoring on longer paths rather than lower classification accuracy). It is the only method to simultaneously achieve high structural quality and high practical applicability. On downstream tasks, ATLAS enables alternative discovery with P@1 = 85.71%, surpassing even human-curated lists (62.34%), and achieves the highest P@1 for repository retrieval. The taxonomy further reveals structural ecosystem trends that are difficult to obtain from flat tags or similarity methods: the shift from libraries to AI/ML applications (now 61% of newly community-adopted projects) becomes visible only through hierarchical, type-based categorization. An interactive taxonomy explorer is available at https://atlas-taxonomy.netlify.app/

Accurate Harmonized Tariff Schedule (HTS) code classification is essential for customs clearance, duty assessment, trade statistics, and regulatory compliance in maritime logistics. However, exact HTS classification remains challenging because product descriptions are often short, incomplete, or ambiguous, while correct classification depends on hierarchical tariff structures, legal notes, and jurisdiction-specific rules. This paper proposes an agentic large language model (LLM) framework for Canadian 10-digit HTS code classification in smart-port and maritime logistics environments. The framework integrates multi-agent information retrieval, semantic retrieval over official tariff documents, evidence-grounded reasoning, consensus-based validation, element-wise voting across hierarchical code components, confidence estimation, and human-in-the-loop escalation. We evaluate the framework on a private dataset of 3,300 domain-expert-labeled product records collected from logistics and delivery contexts. Experimental results show that exact 10-digit classification remains difficult even for advanced LLMs, with performance decreasing from coarse chapter-level prediction to fine-grained tariff and statistical suffix assignment. These findings demonstrate the need for evidence-grounded, uncertainty-aware, and human-centered classification workflows rather than fully autonomous single-step prediction. The proposed framework supports more interpretable, accountable, and compliance-oriented HTS classification for maritime logistics and smart-port operations. Our code is available at https://github.com/Analytics-Everywhere-Lab/hts.

In hierarchical reasoning, failures often originate at intermediate decision points where the agent commits to a wrong branch without recognizing that it lacks critical information. Rather than treating clarification as an external uncertainty trigger, we propose ACTION-RATING, a formulation that places it inside the agent's action space on a shared ordinal scale with navigation, so that asking competes directly with acting at every decision point and help-seeking becomes observable at intermediate states. Two structurally distinct information-seeking modes emerge from the agent's own ratings: mandatory (no viable branch) and opportunistic (residual uncertainty despite a leading candidate). On Harmonized Tariff Schedule classification (30,000-node taxonomy, three benchmarks, 9~LLMs across 4 families), we observe a regime shift from mandatory to opportunistic clarification, with Information-Seeking Effectiveness (ISE), a local diagnostic defined as the fraction of help interactions followed by a correct next navigation step (not a final-task metric), rising from 50% to 74%. Three diagnostic contrasts fail to reproduce this structure. A separability test shows that the information-seeking pattern (mode split, ISE ranking) persists when answer quality is degraded (-18.8% accuracy), supporting an empirical separation between where an agent seeks help and the quality of the help it receives. Under the controlled answer channel, accuracy gains reach +16.2% at 10-digit; we read this as an upper bound on what better localization could unlock, not a deployment estimate.

While machine learning (ML) architectures have evolved rapidly to account for complex data, loss functions like cross-entropy remain mostly structure-agnostic in many real-world applications. However, the "class-symmetric" nature of these standard losses fundamentally limits the ability of ML models to exploit structural relationships between classes, particularly when facing structured noise. We propose Conveyance, a new classification approach and associated loss function tailored to structured class spaces. It allows users to encode graph-like relations between classes without having to define complex joint distributions or manually tune utility matrices. Technically, our loss function operates by maximizing two separate margins over distinct class partitions, while preserving formal properties such as monotonicity and partial convexity. We demonstrate the versatility and effectiveness of our method by applying it to hierarchical classification, ordinal regression, and multiple instance learning. Across these tasks, Conveyance either matches or exceeds the performance of specialized baselines, thereby offering a unified solution for structured class spaces.

Multimodal emotion recognition aims to integrate text, audio, and video sources to understand human affective states. Although multimodal large language models excel at multimodal reasoning, they typically treat emotion categories as independent labels, ignoring the rich hierarchical taxonomy of human psychology. Moreover, lacking external contextual knowledge makes them highly susceptible to over-interpreting noisy cues, further complicating fine-grained emotion classification. To address these issues, we propose \textbf{HyperEmo-RAG}, a retrieval-augmented generation framework that leverages a structured emotional knowledge base. Our framework introduces two key innovations. 1) Hierarchical hyperbolic grounding. Recognizing the inherent hierarchical tree structure of emotion taxonomies, we jointly embed hierarchical emotion labels and multimodal samples into a continuous hyperbolic space (Poincaré ball) and design a hierarchical beam-search deliberation process that progressively retrieves samples from coarse to fine-grained levels. 2) Structured evidence injection. Based on the retrieved evidence, we construct an evidence graph and inject the structured knowledge as explicit cognitive context into the LLM through a Tree-Aware Attention mechanism and an EmotionGraphFormer, preserving the integrity of graph-structured information. Experiments on multiple datasets demonstrate that HyperEmo-RAG significantly outperforms existing methods.