Implicit Neural Representations

Coherent, continuous spatial representations are critical for synthesizing physical and perceptual phenomena into a single representational space. Radial basis kernels provide a path forward for this type of distributed representation. In this work, we aim to characterize and analyze common radial basis kernels realizable in the neurally-plausible framework of spatial semantic pointers. Further, we analyze previous radial basis kernel work based on grid cell-like representations and demonstrate that such representations are both capable of and optimal for realizing radial basis kernels.

Reusing the early layers of cohort-trained INRs as initialization for new signals has been shown to accelerate and improve signal fitting, yet it remains unclear which layers of the shared encoder learn transferable representations and what those representations encode. We address both questions for two standard backbones, SIREN and Fourier-feature MLPs (FFMLP). First, sweeping the freeze depth across the shared encoder at test time, we find that the optimum coincides with the layer of highest weight stable rank. Moreover, freezing at this depth matches or improves on the standard fine-tuning recipe across all our experiments. Second, identifying which layer transfers does not characterize what that layer encodes. To address this we adopt sparse autoencoders (SAEs), the dominant tool in mechanistic interpretability, and present the first SAE decomposition of INR activations into sparse dictionary atoms. Interestingly, SIREN and FFMLP achieve comparable cohort-fitting quality, but learn qualitatively different dictionaries. Cohort SIREN's atoms are localized, tiling the coordinate plane such that each atom fires in a confined region independent of cohort content. Cohort FFMLP's atoms are image-spanning, tracing the contours of memorized cohort signals. Single-atom ablations confirm causal use of these dictionaries: a single FFMLP atom out of 4096 can drop PSNR by up to 10.6 dB across the image, while SIREN ablations remain confined to where the atom fires. Together, these results give the first mechanistic account of what transfers in cohort-trained INRs and turn their activations into inspectable dictionary atoms. These tools open a path towards characterizing what INRs encode and towards architectures designed for generalization rather than memorization.

Implicit neural representations (INRs) encode images as neural-network weights, making image classification a problem of weight-space classifiability. A natural geometric hypothesis is that classifier feedback should make image-specific weights cluster by class in the shared-anchor coordinate. We test this hypothesis in the SIREN-based Meta Weight Transformer (MWT) regime, where end-to-end training meta-learns a shared initialization and inner-loop update schedule for fitting image-specific SIRENs. We find that this prediction fails. Exposed weight-space geometry and supervised clustering pressure do not reliably track trained-reader accuracy; clustering can even make local neighborhoods more class-consistent while making the trained reader worse. Crucially, the reader constructs rather than inherits class-aligned geometry: token-flow diagnostics show that class-aligned neighborhoods become strongly predictive of trained-reader accuracy only after late reader interactions, not in the input coordinate. We further identify the native SIREN bias column in the augmented weight token as a low-dimensional, sample-dependent causal readout route for the trained reader; targeted controls rule out generic scalar-column and marginal-distribution artifacts. The diagnosis motivates interventions that strengthen reader routing, add an explicit bias route, or use denser inner-loop fitting; under the lane-specific training conventions used here, route-directed variants often outperform the shared-anchor baseline but interact non-additively. Task-induced INR weights are classifiable not because they form raw geometric clusters, but because their class signal is routed through the reader.

Scientific foundation models are expected to reuse representations under changes in dataset, acquisition protocol, and deployment domain, yet many sequence backbones treat scientific temporal structure as an unconstrained pattern to be fitted. We argue that this misses a central property of natural dynamical systems: neural and atmospheric time series are organized by interacting processes across multiple physical timescales, and failure to preserve this multiscale structure contributes to brittleness under distribution shift. We formalize this failure mode as temporal kernel mismatch, where a model fits in-distribution dynamics with an effective memory policy that is not anchored to the signal's physical timescales, leading to representation drift and degraded transfer. We propose Physics-Informed Multi-Scale Mamba (PIMSM), a state-space architecture that maps spectrum-estimated transition points between frequency regimes (knee frequencies) to scale-specific discretization parameters and anchors them to acquisition time units. On Human Connectome Project fMRI, PIMSM improves robustness and representation stability under severe temporal-context truncation, extreme low-resource transfer, and resting-state-to-task-state generalization. Without modality-specific adaptation, the same architecture also attains the lowest variable-wise MAE across all reported horizons and variables on Weather-5K held-out-station spatial out-of-distribution forecasting. These results support temporal-scale alignment as a practical inductive bias for scientific foundation models that must preserve structure, not only fit correlations, under deployment shift.

Multimodal self-supervised learning (MSSL) has emerged as a key paradigm for pretraining geospatial foundation models. However, existing geospatial MSSL methods are mainly designed for static pairs of modalities, such as satellite imagery, street-view imagery, and text, where learning is driven by aligning observations from the same or nearby locations. This assumption breaks down for human mobility trajectories, which represent continuous movement along paths rather than discrete observations at individual locations. Although trajectories are important for urban understanding through their ability to capture human activity across roads, neighborhoods, and places over time, they remain largely underexplored in current geospatial MSSL frameworks. We present TrajGANR, a novel trajectory-centric geospatial MSSL framework that aligns continuous movement patterns with static, location-based observations. TrajGANR learns a continuous neural representation of trajectories at arbitrary points along each path, which enables fine-grained alignment with nearby street-view images, even when they are not co-located with any trajectory waypoints. We leverage this capability to introduce an MSSL objective that jointly aligns three modalities: trajectories, street-view images, and their geographic locations. We evaluate TrajGANR on four urban mobility and road understanding tasks. Across these tasks, TrajGANR consistently outperforms existing geospatial MSSL frameworks and a trajectory-specific foundation model. Ablation studies further demonstrate that our proposed MSSL objective and the multimodal learning framework are the primary drivers of these improvements, highlighting the importance of fine-grained geospatial alignment over coarser aggregation, as well as geospatial multimodal learning.

Training world models on vast quantities of unlabelled videos is a critical step toward fully autonomous intelligence. However, the prevailing paradigm of encoding raw pixels into opaque latent spaces and relying on heavy decoders for reconstruction leaves these models computationally expensive and uninterpretable. We address this problem by introducing NOVA, a world modelling framework that represents the system state as the weights and biases of an auxiliary coordinate-based implicit neural representation (INR). This structured representation is analytically rendered, which eliminates the decoder bottleneck while conferring compactness, portability, and zero-shot super-resolution. Furthermore, like most latent action models, NOVA can be distilled into a context-dependent video generator via an action-matching objective. Surprisingly, without resorting to auxiliary losses or adversarial objectives, NOVA can disentangle structural scene components such as background, foreground, and inter-frame motion, enabling users to edit either content or dynamics without compromising the other. We validate our framework on several challenging datasets, achieving strong controllable forecasting while operating on a single consumer GPU at $\sim$40M parameters. Ultimately, structured representations like INRs not only enhance our understanding of latent dynamics but also pave the way for immersive and customisable virtual experiences.

Neural representations carry rich geometric structure; but does that structure causally shape behavior? To address this question, we intervene along paths through activation space defined by different geometries, and measure the behavioral trajectories they induce. In particular, we test whether interventions that respect the geometry of activation space will yield behaviors close to those the model exhibits naturally. Concretely, we first fit an activation manifold $M_h$ to representations and a behavior manifold $M_y$ to output probability distributions. We then test the link $M_h \leftrightarrow M_y$ via interventions: we find that steering along $M_h$, which we term manifold steering, yields behavioral trajectories that follow $M_y$, while linear steering -- which assumes a Euclidean geometry -- cuts through off-manifold regions and hence produces unnatural outputs. Moreover, optimizing interventions in activation space to produce paths along $M_y$ recovers activation trajectories that trace the curvature of $M_h$. We demonstrate this bidirectional relationship between the geometry of representation and behavior across tasks and modalities. In language models, we use reasoning tasks with cyclic and sequential geometries as well as in-context learning tasks with more complex graph geometries. In a video world model, we use a task with geometry corresponding to physical dynamics. Overall, our work shows that geometry in neural representation is not merely incidental, but is in fact the proper object for enabling principled control via intervention on internals. This recasts the core problem of steering from finding the right direction to finding the right geometry.

Understanding the neural mechanisms underlying visual computation has long been a central challenge in neuroscience. Recent alignment based approaches have improved the accuracy of decoding visual stimuli from brain activity, yet they provide limited insight into the neural computations that give rise to these improvements. To address this gap, we propose Dual-Tower Image-Neural Alignment (DINA), an interpretable contrastive framework for analyzing population level visual computations in primary visual cortex (V1). DINA jointly trains a biologically motivated dual-tower architecture that aligns visual stimuli and corresponding V1 population responses in a shared latent space at the level of intermediate feature maps, enabling both accurate decoding and direct access to interpretable feature maps. Evaluated on large-scale two-photon calcium imaging data from mouse V1, DINA achieves accurate neural-based decoding while revealing that decoding performance is primarily supported by coarse, low-level visual structure, rather than semantic category information or fine-grained details. Further analysis reveals that alignable feature maps emerge from multiple spatially distributed image regions, capturing both shape and texture cues, and are predominantly reconstructed by sparse subsets of strongly responsive neurons and their functional interactions. Together, these results confirm that, beyond enabling accurate decoding, DINA provides a principled framework for probing the computational mechanisms underlying visual processing in V1.

Implicit neural representations (INRs) have emerged as a powerful paradigm for medical imaging via physics-informed unsupervised learning. Classical INRs optimize an entire network from scratch for each subject, leading to inefficient training and suboptimal imaging quality. Recent initialization-based approaches attempt to inject population priors into pre-trained networks, yet they rely on high-quality images and often suffer from catastrophic forgetting during fine-tuning. We present DisINR, a novel INR framework that explicitly disentangles shared and subject-specific representations. DisINR introduces a shared encoder-decoder pair and subject-specific encoders, whose features are jointly decoded for image reconstruction. By integrating differentiable forward models, it pre-trains the shared modules directly from limited raw measurements, removing the need for pre-acquired high-quality images. During test-time adaptation, only the subject-specific encoder is optimized, while the shared pair remains frozen, effectively preserving learned priors. Extensive evaluations on three representative medical imaging tasks show that DisINR significantly outperforms state-of-the-art INRs in both reconstruction accuracy and efficiency.

Classification of EEG signals using shallow Convolutional Neural Networks (CNNs) is a prevalent and successful approach across a variety of fields. Most of these models use independent one-dimensional (1D) convolutional layers along the spatial and temporal dimensions, which are concatenated without a non-linear activation layer between. In this paper, we investigate an alternative encoding that operates a bi-dimensional (2D) spatiotemporal convolution. While 2D convolutions are numerically identical to two concatenated 1D convolutions along the two dimensions, the impact on learning is still uncertain. We test 1D and 2D CNNs and a CNN+transformer hybrid model in a low-dimensional (3-channel) and a high-dimensional (22-channel) BCI motor imagery classification task. We observe that 2D convolutions significantly reduce training time in high-dimensional tasks while maintaining performance. We investigate the root of this improvement and find no difference in spectral feature importance. However, a clear pattern emerges in representational similarity across models: 1D and 2D models yield vastly different representational geometries. Overall, we suggest an improved model with a 2D convolutional layer for faster training and inference. We also highlight the importance of architecturally-driven encoding when processing complex multivariate signals, as reflected in internal representations rather than purely in performance metrics.

Surface electromyography provides a practical way to infer human movement intention from wearable muscle recordings, but models trained under a single acquisition setting often lose reliability when the user, session, electrode layout, or gesture protocol changes. This paper proposes AEMG, a self-supervised learning approach designed to extract reusable neuromuscular representations from diverse EMG sources. Eight public gesture datasets are first transformed into a shared signal format to reduce discrepancies in channel configuration, sensor topology, and recording protocol. Instead of relying on fixed-length sliding windows, AEMG identifies contraction events from energy variations and represents them as compact neuromuscular tokens, while ordered token groups describe the coordinated activity of multiple muscles during motion. A spatially and temporally conditioned Transformer is then used to encode these token sequences, preserving information about electrode position, activation timing, and sequential structure. For pre-training, the model constructs a discrete library of contraction prototypes through vector-quantized reconstruction and further learns contextual dependencies by recovering masked neuromuscular tokens from surrounding observations. Experiments under leave-one-subject-out and low-label adaptation settings show that the learned representation improves robustness to unseen users and reduces the amount of calibration data required for gesture recognition. These findings suggest that event-level token modeling offers a scalable route toward adaptable and data-efficient EMG-based motor-intent understanding.

Activation-alignment measures such as Representational Similarity Analysis (RSA), Canonical Correlation Analysis (CCA), and Centered Kernel Alignment (CKA) are widely used to compare biological and artificial neural representations. Recent theoretical work interprets many of these methods as assessing agreement between optimal linear readouts over broad families of global tasks. However, agreement at the level of global readouts does not determine how a system uses local stimulus evidence. Specifically, representations may align in activation space yet differ in their sensitivity to small perturbations. To address this challenge, we introduce a complementary framework based on local decodable information, which focuses on a representation's ability, under noise, to discriminate small perturbations within a specified stimulus-coordinate subspace. Building on Fisher information and local representation geometry, we summarize each representation using the expected projected pullback/Fisher metric over that subspace. This formulation induces a second-moment family of local discrimination tasks, for which the resulting operator provides a minimal, complete dataset-level summary of expected discriminability. We compare these regularized signatures using a log-spectral distance on the manifold of symmetric positive definite (SPD) matrices, yielding the Spectral Riemannian Alignment Score (S-RAS) and a uniform multiplicative certificate over the corresponding family of lifted task values. Empirically, this framework enables the recovery of corresponding layers across independently trained artificial neural networks, supports transferable class-conditional probes, reveals controlled dissociations between standard and robust training, and uncovers stimulus-coordinate family effects across mouse visual cortex using the Allen Brain Observatory static gratings dataset.

Collections of interacting AI agents can form coalitions, creating emergent group-level organization that is critical for AI safety and alignment. However, observing agent behavior alone is often insufficient to distinguish genuine informational coupling from spurious similarity, as consequential coalitions may form at the level of internal representations before any overt behavioral change is apparent. Here, we introduce a practical method for detecting coalition structure from the internal neural representations of multi-agent systems. The approach constructs a pairwise mutual-information graph from the hidden states of agents and applies spectral partitioning to identify the most salient coalition boundary. We validate this method in two domains. First, in multi-agent reinforcement learning environments, the method successfully recovers programmed hierarchical and dynamic coalition structures and correctly rejects false positives arising from behavioral coordination without informational coupling. Second, using a large language model, the method identifies coalition structures implied by descriptive prompts, tracks dynamic team reassignments, and reveals a representational hierarchy where explicit labels dominate over conflicting interaction patterns. Across both settings, the recovered partition reveals subgroup organization that a scalar cross-agent mutual-information measure cannot distinguish. The results demonstrate that analyzing hidden-state mutual information through spectral partitioning provides a scalable diagnostic for identifying representational coalitions, offering a valuable tool for monitoring emergent structure in distributed AI systems.

The co-optimization of geometry and physical parameters remains challenging in transient multiphysics systems involving moving boundaries, nonlinear material response, phase transitions, and competing objectives. Existing methods often optimize geometry and physical variables separately, rely on simplified steady-state physics, or require offline data generation and reduced design spaces. Here, we present an end-to-end differentiable co-optimization framework that couples an implicit neural representation of geometry with a JAX-compiled Eulerian multiphysics solver. Geometry is represented as a signed distance field using Fourier-feature-encoded spatial coordinates, while boundary conditions, initial conditions, process controls, and material parameters are optimized within the same differentiable loop. Continuous relaxations represent non-smooth physical transitions while preserving compatibility with reverse-mode automatic differentiation and backpropagation through time. We demonstrate the framework using a transient hamburger-cooking benchmark, selected as an interpretable multiphysics problem rather than a culinary optimization exercise. The benchmark combines conductive and convective heat transfer, latent energy effects, moisture and fat transport, shrinkage-induced geometry evolution, evolving contact boundary conditions, flipping-induced boundary-condition changes, and competing quality objectives. Results show that geometry-only optimization modifies shape to relieve thermal bottlenecks, while joint co-optimization distributes the design response across geometry, material state, process variables, and boundary conditions through gradients propagated over the full transient rollout.

Modeling invasive neural spike data is fundamental to advancing high-performance brain-computer interfaces (BCIs). However, existing approaches face critical challenges, including limited-scale heterogeneous data, cross-domain distribution shift, and the intrinsic spatiotemporal complexity of invasive neural signals. In this work, we propose UniBCI, a unified pretrained model for invasive Brain-Computer Interfaces. The model integrates three key components: (1) a context-conditioned spatio-temporal tokenization (CST) scheme that embeds neural signals together with metadata into a shared representation space; (2) a hierarchical Interval-Area Attention (IAA) mechanism that captures patterns of spike dynamics in slots via linear attention and locality dependencies via sliding-window attention; and (3) a scalable self-supervised masked signals reconstruction objective for learning generalizable neural representations from large-scale unlabeled data. We construct a pretraining corpus spanning multiple species, subjects, brain regions, and behavioral experiment paradigms. These heterogeneous recordings are standardize via our proposed unified normalization and tokenization. Comprehensive experiments demonstrate that UniBCI achieves SOTA performance across diverse downstream tasks while improving generalization. Moreover, the model achieves a strong balance between accuracy and efficiency, with fewer trainable parameters and lower inference latency. These results suggest that UniBCI provides a practical step toward general-purpose neural foundation models, enabling robust, scalable, and transferable representation learning for invasive neural data. The code for this paper is available at: https://anonymous.4open.science/r/UniBCI-C805.

Implicit neural representations (INRs) are increasingly being used as tools to map coordinates to signals, encompassing applications from neural fields to texture compression, shape representations, and beyond. Most INR methods are based on using high-dimensional projections of the initial coordinates through encoders such as grid or positional encoding. Nevertheless, positional encoding is often insufficient and grids, as we show in this paper, require high resolution for being able to learn. In this paper, we demonstrate that positional encoding can be used not only as a high-dimensional embedding but also decomposed as a series of meaningful points. We propose the Positional Encoding Projected Sampling, where we treat the projection of the original coordinate at each frequency as a point of interest. We describe the motion of each point with respect to the frequencies and show that it follows a unique pattern. Finally, we use the unique motion of each point as a basis decomposition for doing learned positional encoding using grids. We prove, using three competitive applications; image representation, texture compression, and signed distance function; that the proposed approach outperforms the current state of the art methods, and often requires 25% less parameters for equivalent reconstruction error or rendering.

Neural networks exhibit a remarkable degree of representational convergence across diverse architectures, training objectives, and even data modalities. This convergence is predictive of alignment with brain representation. A recent hypothesis suggests this arises from learning the underlying structure in the environment in similar ways. However, it is unclear how individual stimuli elicit convergent representations across networks. An image can be perceived in multiple ways and expressed differently using words. Here, we introduce a methodology based on the Generalized Procrustes Algorithm to measure intra-modal representational convergence at the single-stimulus level. We applied this to vision models with distinct training objectives, selecting stimuli based on their degree of alignment (intra-modal dispersion). Crucially, we found that this intra-modal dispersion strongly modulates alignment between vision and language models (cross-modal convergence). Specifically, stimuli with low intra-modal dispersion (high agreement among vision models) elicited significantly higher cross-modal alignment than those with high dispersion, by up to a factor of two (e.g., in pairings of DINOv2 with language models). This effect was robust to stimulus selection criteria and generalized across different pairings of vision and language models. Measuring convergence at the single-stimulus level provides a path toward understanding the sources of convergence and divergence across modalities, and between neural networks and human neural representations.

Neural representations (NRs), such as neural fields and 3D Gaussians, effectively model volumetric data in computed tomography (CT) but suffer from severe artifacts under sparse-view settings. To address this, we propose DiffNR, a novel framework that enhances NR optimization with diffusion priors. At its core is SliceFixer, a single-step diffusion model designed to correct artifacts in degraded slices. We integrate specialized conditioning layers into the network and develop tailored data curation strategies to support model finetuning. During reconstruction, SliceFixer periodically generates pseudo-reference volumes, providing auxiliary 3D perceptual supervision to fix underconstrained regions. Compared to prior methods that embed CT solvers into time-consuming iterative denoising, our repair-and-augment strategy avoids frequent diffusion model queries, leading to better runtime performance. Extensive experiments show that DiffNR improves PSNR by 3.99 dB on average, generalizes well across domains, and maintains efficient optimization.

High-capacity associative memories based on Kernel Logistic Regression (KLR) achieve strong retrieval performance but typically require substantial computational resources. This paper investigates the compressibility of KLR Hopfield networks to clarify the geometric principles underlying their robust representations. We present a geometric interpretation based on spontaneous symmetry breaking and Walsh analysis, and examine it through compression experiments involving quantization and pruning. The experiments reveal a clear asymmetry: the network remains robust under low-precision quantization while exhibiting strong sensitivity to pruning. We interpret this behavior through a "sparse function, dense representation" principle, in which a sparse input mapping is implemented through a dense bimodal parameterization. These findings suggest a practical route toward hardware-efficient kernel associative memories and provide insight into the geometric principles underlying robust representation in neural systems.

The analysis of neural representation has become an integral part of research aiming to better understand the inner workings of neural networks. While there are many different approaches to investigate neural representations, an important line of research has focused on doing so through the lens of intrinsic dimensions (IDs). Although this perspective has provided valuable insights and stimulated substantial follow-up research, important limitations of this approach have remained largely unaddressed. In this paper, we highlight a crucial discrepancy between theory and practice of IDs in neural representations, theoretically and empirically showing that common ID estimators are, in fact, not tracking the true underlying ID of the representation. We contrast this negative result with an investigation of the underlying factors that may drive commonly reported ID-related results on neural representation in the literature. Building on these insights, we offer a new perspective on ID estimation in neural representations.

Reconstructing continuous environmental fields from sparse and irregular observations remains a central challenge in environmental modelling and biodiversity informatics. Many ecological datasets are heterogeneous in space and time, making grid-based approaches difficult to scale or generalise across domains. Here, we evaluate implicit neural representations (INRs) as a coordinate-based modelling framework for learning continuous spatial and spatio-temporal fields directly from coordinate inputs. We analyse their behaviour across three representative modelling scenarios: species distribution reconstruction, phenological dynamics, and morphological segmentation derived from open biodiversity data. Beyond predictive performance, we examine interpolation behaviour, spatial coherence, and computational characteristics relevant for environmental modelling workflows, including scalability, resolution-independent querying, and architectural inductive bias. Results show that neural fields provide stable continuous representations with predictable computational cost, complementing classical smoothers and tree-based approaches. These findings position coordinate-based neural fields as a flexible representation layer that can be integrated into environmental modelling pipelines and exploratory analysis frameworks for large, irregularly sampled datasets.

AlphaGeometry represents a milestone in neuro-symbolic reasoning, yet its architecture faces a log-linear scaling bottleneck within its symbolic deduction engine that limits its efficiency as problem complexity increases. Recent technical reports suggest that current domain-specific languages may be isomorphic as input representations to natural language, interchanging them acts as a performance-invariant transformation, implying that current neural guidance relies on superficial encodings rather than structural understanding. This paper addresses this representation bottleneck by proposing a logic-to-topology encoding designed to reveal the structural invariants of a model's latent space under a transformation of its input space. By leveraging the Logic of Observation, we utilize the duality between provability in observable theories and topologies to propose a logic-to-topology encoder for the input space. We introduce the concept of the "topological dual of a dataset", a transformation that bridges formal logic, topology, and neural processing. This framework serves as a Rosetta Stone for neuro-symbolic AI, providing a principled pathway for the mechanistic interpretability of how models navigate complex discovery paths.

Continuous Spatio-Temporal Video Super-Resolution (C-STVSR) aims to simultaneously enhance the spatial resolution and frame rate of videos by arbitrary scale factors, offering greater flexibility than fixed-scale methods that are constrained by predefined upsampling ratios. In recent years, methods based on Implicit Neural Representations (INR) have made significant progress in C-STVSR by learning continuous mappings from spatio-temporal coordinates to pixel values. However, these methods fundamentally rely on dense pixel-wise grid queries, causing computational cost to scale linearly with the number of interpolated frames and severely limiting inference efficiency. We propose GS-STVSR, an ultra-efficient C-STVSR framework based on 2D Gaussian Splatting (2D-GS) that drives the spatiotemporal evolution of Gaussian kernels through continuous motion modeling, bypassing dense grid queries entirely. We exploit the strong temporal stability of covariance parameters for lightweight intermediate fitting, design an optical flow-guided motion module to derive Gaussian position and color at arbitrary time steps, introduce a Covariance resampling alignment module to prevent covariance drift, and propose an adaptive offset window for large-scale motion. Extensive experiments on Vid4, GoPro, and Adobe240 show that GS-STVSR achieves state-of-the-art quality across all benchmarks. Moreover, its inference time remains nearly constant at conventional temporal scales (X2--X8) and delivers over X3 speedup at extreme scales X32, demonstrating strong practical applicability.

Recent studies reveal striking representational alignment between artificial neural networks (ANNs) and biological brains, leading to proposals that all sufficiently capable systems converge on universal representations of reality. Here, we argue that this claim of Universality is premature. We introduce the Umwelt Representation Hypothesis (URH), proposing that alignment arises not from convergence toward a single global optimum, but from overlap in ecological constraints under which systems develop. We review empirical evidence showing that representational differences between species, individuals, and ANNs are systematic and adaptive, which is difficult to reconcile with Universality. Finally, we reframe ANN model comparison as a method for mapping clusters of alignment in ecological constraint space rather than searching for a single optimal world model.

A central question in computational neuroscience is whether the learning rule used to train a neural network determines how well its internal representations align with those of the human visual cortex. We present a systematic comparison of four learning rules (backpropagation (BP), feedback alignment (FA), predictive coding (PC), and spike-timing-dependent plasticity (STDP)) applied to identical convolutional architectures and evaluated against human fMRI data from the THINGS-fMRI dataset (720 stimuli, 3 subjects) using Representational Similarity Analysis (RSA). All models process stimuli at 224 x 224 resolution; results are averaged across 5 random seeds. Crucially, we include an untrained random-weights baseline that reveals the dominant role of architecture. At V1/V2, the untrained baseline exceeds backpropagation (rho = 0.076 vs. rho = 0.034; Delta-rho = +0.044, p < 0.001), and STDP achieves the highest V1 alignment among trained rules (rho = 0.064). At LOC, only BP reliably exceeds the random baseline (rho = 0.012 vs. -0.005, p < 0.001). At IT, all five conditions converge (rho = 0.008-0.014) with no significant pairwise differences among trained rules (p > 0.05, FDR-corrected). FA consistently produces the lowest alignment at V1, V2, and LOC (rho = 0.012 at V1, below all other conditions). Partial RSA confirms all effects survive pixel-similarity control. Seed variability is small relative to between-rule differences at V1/V2. These results demonstrate that early visual alignment is architecture-driven, learning rules differentiate only at intermediate areas, and all rules converge at the highest levels of the hierarchy.

Addressing the issues of severe noise and high frequency structural degradation in visible images under low-light conditions, this paper proposes a Near Infrared (NIR) aided low light image restoration method based on Frequency Decoupled Implicit Neural Representation (FDINR). Based on the statistical prior of RGB-NIR cross-modal frequency correlations, specifically that low-frequency RGB signals are more reliable, whereas high frequency NIR signals exhibit higher correlation, we explicitly decompose images into distinct frequency components via multi-scale wavelet transforms and construct a dual-branch implicit neural representation framework. Within this framework, we design a cross modal differentiated frequency supervision mechanism, leveraging low light RGB to guide the reconstruction of low frequency luminance and color, and utilizing high-SNR NIR signals to constrain the generation of high frequency texture details, thereby achieving complementary advantages in the frequency domain. Furthermore, an uncertainty-based adaptive weighting loss function is introduced to automatically balance the contributions of different frequency tasks, solving the problems of color distortion and artifacts caused by rigid fusion in the spatial domain common in traditional methods. Experimental results demonstrate that FD-INR not only effectively restores image luminance consistency and structural details but also, benefitting from its implicit continuous representation, outperforms existing methods in arbitrary-resolution reconstruction tasks, significantly enhancing the reliability of low light perception.

We introduce the Tan-HWG framework (Hebbian-Wasserstein-Geometry), a geometric theory of Hebbian plasticity in which memory states are modeled as probability measures evolving through Wasserstein minimizing movements. Hebbian learning rules are formalized as Hebbian energies satisfying a sequential stability condition, ensuring well-posed fiberwise JKO updates, optimal-transport realizations, and an energy descent inequality. This variational structure induces a fundamental separation between internal and observable dynamics. Internal memory states evolve along Wasserstein geodesics in a latent curved space, while observable quantities, such as effective synaptic weights, arise through geometric projection maps into external spaces. Simplicial projections recover classical affine schemes (including exponential moving averages and mirror descent), while revealing synaptic competition and pruning as geometric consequences of mass redistribution. Hilbertian projections provide a geometric account of phase alignment and multi-scale coherence. Classical neural networks appear as flat projections of this curved dynamics, while the framework naturally accommodates richer distributional representations, including structural weights and embedding memories, and their spectral extensions in complex internal spaces. Under mild Lipschitz regularity assumptions, including a quasi-stationary "sleep-mode" regime, we establish the existence of continuous-time limit curves. This yields a variational formulation of memory consolidation as a perturbed Wasserstein gradient flow. The framework thus provides a unified geometric foundation for synaptic plasticity, representation dynamics, and context-dependent computation.

Implicit neural representations (INRs) mark a fundamental shift in signal modeling, moving from discrete sampled data to continuous functional representations. By parameterizing signals as neural networks, INRs provide a unified framework for representing images, audio, video, 3D geometry, and beyond as continuous functions of their coordinates. This functional viewpoint enables signal operations such as differentiation to be carried out analytically through automatic differentiation rather than through discrete approximations. In this article, we examine the evolution of INRs from a signal processing perspective, emphasizing spectral behavior, sampling theory, and multiscale representation. We trace the progression from standard coordinate based networks, which exhibit a spectral bias toward low frequency components, to more advanced designs that reshape the approximation space through specialized activations, including periodic, localized, and adaptive functions. We also discuss structured representations, such as hierarchical decompositions and hash grid encodings, that improve spatial adaptivity and computational efficiency. We further highlight the utility of INRs across a broad range of applications, including inverse problems in medical and radar imaging, compression, and 3D scene representation. By interpreting INRs as learned signal models whose approximation spaces adapt to the underlying data, this article clarifies the field's core conceptual developments and outlines open challenges in theoretical stability, weight space interpretability, and large scale generalization.

We explore the possibility of solving Partial Differential Equations (PDEs) using discrete weak formulations. We propose a programming environment for defining a discrete computational domain, introducing discrete functions defined over a set of points, constructing discrete inner products, and introducing discrete weak formulations employing Kronecker delta test functions. Building on this setup, we propose a discrete neural network representation, training the solution function defined over a discrete set of points and employing discrete finite difference derivatives in the automatic differentiation procedures. As a challenging computational model example, we focus on Stokes equations in two-dimensions, defined over a discrete set of points. We train the solution using the discrete weak residual and the Adamax algorithm with discrete automatic differentiation of the discrete gradients. Despite introducing the python environment, we also provide a rigorous mathematical formulation based on discrete weak formulations, proving the well-posedness and robustness of the loss function. The solution of the discrete weak formulations is based on neural network training employing a robust loss function that is related to the true error. In this way, we have a robust control of the numerical error during the training of the neural networks. Besides the Stokes formulation, we also explain the functionality of the proposed library using the Laplace problem formulation.

Comparing internal representations is a central goal in neuroscience and machine learning, but standard linear alignment metrics (Representational Similarity Analysis, Centered Kernel Alignment, and linear regression) are frequently applied to neural activity coordinates rather than on the underlying features. We show this matters when neural systems operate in superposition, encoding more features than they have neurons via linear compression. Closed-form derivations prove that these metrics depend on the Gram matrices of each system's projection, not on the latent features themselves: alignment thus combines what a system represents with how it is encoded. For those interested in what features two systems share, this is a problem: Two networks can have identical feature content yet appear more dissimilar than networks exhibiting partial feature overlap. This apparent misalignment need not reflect lost information as compressed sensing guarantees sparse features remain recoverable from the compressed activity. We confirm this by training supervised TopK sparse autoencoders that realize solvable compressed sensing by construction, finding alignment on recovered latents restored even when raw-activation alignment remains deflated. We extend the result to unsupervised SAEs trained without ground-truth latents, and to pretrained vision and language model SAEs, where SAE-latent alignment exceeds raw-activation alignment, consistent with superposition in real systems.

Robust scene representation is essential for autonomous systems to safely operate in challenging low-visibility environments. In these conditions, radar has a clear advantage over cameras and lidars due to its resilience to environmental factors such as fog, smoke, or dust. However, radar data is inherently sparse and noisy, making reliable 3D surface reconstruction challenging. To address this, we propose a neural implicit approach for 3D mapping from radar point clouds that jointly models scene geometry and view-dependent radar intensities. Our method leverages a memory-efficient hybrid feature encoding to learn a continuous Signed Distance Field (SDF) for surface reconstruction, while also capturing radar-specific reflective properties. We show that our approach produces smoother, more accurate 3D surface reconstructions compared to existing lidar-based reconstruction methods applied to radar data and can reconstruct view-dependent radar intensities. We also show that, in general, as input point clouds get sparser, neural implicit representations render more faithful surfaces than traditional explicit SDFs and meshing techniques.

Spatial graphs provide a lightweight and elegant representation of curvilinear anatomical structures such as blood vessels, lung airways, and neuronal networks. Accurately modeling these graphs is crucial in clinical and (bio-)medical research. However, the high spatial resolution of large networks drastically increases their complexity, resulting in significant computational challenges. In this work, we aim to tackle these challenges by proposing VesselTok, a framework that approaches spatially dense graphs from a parametric shape perspective to learn latent representations (tokens). VesselTok leverages centerline points with a pseudo radius to effectively encode tubular geometry. Specifically, we learn a novel latent representation conditioned on centerline points to encode neural implicit representations of vessel-like, tubular structures. We demonstrate VesselTok's performance across diverse anatomies, including lung airways, lung vessels, and brain vessels, highlighting its ability to robustly encode complex topologies. To prove the effectiveness of VesselTok's learnt latent representations, we show that they (i) generalize to unseen anatomies, (ii) support generative modeling of plausible anatomical graphs, and (iii) transfer effectively to downstream inverse problems, such as link prediction.

Accurate 3D reconstruction of vertebral anatomy from ultrasound is important for guiding minimally invasive spine interventions, but it remains challenging due to acoustic shadowing and view-dependent signal variations. We propose an occupancy-based shape completion method that reconstructs complete 3D anatomical geometry from partial ultrasound observations. Crucially for intra-operative applications, our approach extracts the anatomical surface directly from the image, avoiding the need for anatomical labels during inference. This label-free completion relies on a coupled latent space representing both the image appearance and the underlying anatomical shape. By leveraging a Neural Implicit Representation (NIR) that jointly models both spatial occupancy and acoustic interactions, the method uses acoustic parameters to become implicitly aware of the unseen regions without explicit shadowing labels through tracking acoustic signal transmission. We show that this method outperforms state-of-the-art shape completion for B-mode ultrasound by 80% in HD95 score. We validate our approach both in-silico and on phantom US images with registered mesh models from CT labels, demonstrating accurate reconstruction of occluded anatomy and robust generalization across diverse imaging conditions. Code and data will be released on publication.

Efficient coding theory predicts that biological perceptual systems compress sensory input optimally under resource constraints, with the systematic structure of errors reflecting the geometry of that compression. Here we operationalize this principle using rate-distortion theory (RDT) to characterize how any system - biological or artificial - trades representational fidelity for informational efficiency. Treating stimulus-response behavior as an effective communication channel, we infer rate-distortion (RD) frontiers directly from confusion matrices and summarize each system with three geometric signatures: slope (beta), curvature (kappa), and area under the RD curve (AUC), capturing the marginal cost, abruptness, and overall efficiency of the accuracy-compression trade-off respectively. Applying this framework to human psychophysical data and 18 deep vision models across 12 families of controlled image perturbations at graded severities, we find that both biological and artificial systems follow a common lossy-compression principle but occupy systematically different regions of RD space. Humans exhibit smooth, flexible trade-offs characteristic of near-optimal efficient coding, while deep networks operate in steeper, more brittle regimes even at matched accuracy, with geometry dissociable from performance across training regimes. Critically, behavioral RD signatures track internal representational geometry, evidenced by the behaviorally inferred compression structure correlating with internal representational dissimilarity across all models. These results establish RD geometry as a compact diagnostic of perceptual compression strategy that recovers mechanistically interpretable structure in internal representations from behavioral input alone and extends naturally to the direct characterization of compression geometry in neural population activity.

Compositional generalization, the ability to recognize familiar parts in novel contexts, is a defining property of intelligent systems. Although modern models are trained on massive datasets, they still cover only a tiny fraction of the combinatorial space of possible inputs, raising the question of what structure representations must have to support generalization to unseen combinations. We formalize three desiderata for compositional generalization under standard training (divisibility, transferability, stability) and show they impose necessary geometric constraints: representations must decompose linearly into per-concept components, and these components must be orthogonal across concepts. This provides theoretical grounding for the Linear Representation Hypothesis: the linear structure widely observed in neural representations is a necessary consequence of compositional generalization. We further derive dimension bounds linking the number of composable concepts to the embedding geometry. Empirically, we evaluate these predictions across modern vision models (CLIP, SigLIP, DINO) and find that representations exhibit partial linear factorization with low-rank, near-orthogonal per-concept factors, and that the degree of this structure correlates with compositional generalization on unseen combinations. As models continue to scale, these conditions predict the representational geometry they may converge to. Code is available at https://github.com/oshapio/necessary-compositionality.

The Platonic Representation Hypothesis suggests that representations from neural networks are converging to a common statistical model of reality. We show that the existing metrics used to measure representational similarity are confounded by network scale: increasing model depth or width can systematically inflate representational similarity scores. To correct these effects, we introduce a permutation-based null-calibration framework that transforms any representational similarity metric into a calibrated score with statistical guarantees. We revisit the Platonic Representation Hypothesis with our calibration framework, which reveals a nuanced picture: the apparent convergence reported by global spectral measures largely disappears after calibration, while local neighborhood similarity, but not local distances, retains significant agreement across different modalities. Based on these findings, we propose the Aristotelian Representation Hypothesis: representations in neural networks are converging to shared local neighborhood relationships.

To develop a deep-learning method for achieving fast high-resolution MR elastography from highly undersampled data without the need of high-quality training dataset. We first framed the deep neural network representation as a nonlinear extension of the linear subspace model, then used it to represent and reconstruct MRE image repetitions from undersampled k-space data. The network weights were learned using a multi-level k-space consistent loss. To further enhance reconstruction quality, phase-contrast specific magnitude and phase priors were incorporated, including the similarity of anatomical structures and smoothness of wave-induced harmonic displacement. Experiments were conducted using both 3D gradient-echo spiral and multi-slice spin-echo spiral MRE datasets. Compared to the conventional linear subspace-based approaches, the nonlinear network representation method was able to produce superior image reconstruction with suppressed noise and artifacts from a single in-plane spiral arm per MRE repetition (e.g., 2mm isotropic resolution in 1 min with a total R=10), yielding comparable stiffness estimation to the fully sampled data. This work demonstrated the feasibility of using deep network representations to model and reconstruct MRE images from highly-undersampled data, a nonlinear extension of the subspace-based approaches.

Quantum implicit neural representations have recently emerged as compact function approximators for continuous visual signals. In parallel, Neural Radiance Fields (NeRFs) have become a dominant framework for novel-view synthesis by recovering continuous volumetric scene representations from posed 2D images, but often require substantial model capacity and intensive optimisation. We introduce 3D Quantum Implicit Scene Representation (3D-QISR), the first hybrid quantum-classical radiance-field model for novel-view synthesis from 2D observations. 3D-QISR replaces the classical NeRF backbone with parameterised quantum circuits that encode spatial and view-dependent information through quantum state transformations, enabling compact quantum-enhanced implicit representations while preserving compatibility with standard volumetric rendering. We propose two architectures: Full 3D-QISR, which maximises the representational role of a unified quantum state, and Dual-Branch 3D-QISR, which separates spatial and view-dependent quantum embeddings to introduce a task-aligned inductive bias, reduce state-preparation complexity, and improve scalability and hardware compatibility. Experiments on moderate-resolution novel-view synthesis benchmarks show that 3D-QISR executed on simulated quantum hardware matches or outperforms classical baselines while using fewer than half the trainable parameters. These results position quantum neural networks as compact and competitive building blocks for continuous volumetric scene representation, opening a new direction for quantum-enhanced implicit neural rendering.

This paper presents DINO-SLAM, a DINO-informed design strategy to enhance implicit (Neural Radiance Field -- NeRF) and explicit representations (Gaussian Splatting -- GS) in SLAM systems through the more comprehensive semantics understanding enabled by DINO. This latter alone, however, lacks proper 3D geometry understanding, allowing only for marginal improvements. Therefore, we rely on a Scene Geometry Encoder (SGE) to enrich DINO features into geometry-aware DINO features (geoDINO), to better understand those geometric relationships that vanilla DINO features fail to capture. Building upon it, we propose two foundational paradigms for NeRF and GS SLAM systems integrating geoDINO features. Compared to state-of-the-art methods, our DINO-informed pipelines achieve superior performance on the Replica, ScanNet, and TUM datasets.

Recent advances in 3D neural representations and instance-level editing models have enabled the efficient creation of high-quality 3D content. However, achieving precise local 3D edits remains challenging, especially for Gaussian Splatting, due to inconsistent multi-view 2D part segmentations and inherently ambiguous nature of Score Distillation Sampling (SDS) loss. To address these limitations, we propose RoMaP, a novel local 3D Gaussian editing framework that enables precise and drastic part-level modifications. First, we introduce a robust 3D mask generation module with our 3D-Geometry Aware Label Prediction (3D-GALP), which uses spherical harmonics (SH) coefficients to model view-dependent label variations and soft-label property, yielding accurate and consistent part segmentations across viewpoints. Second, we propose a regularized SDS loss that combines the standard SDS loss with additional regularizers. In particular, an L1 anchor loss is introduced via our Scheduled Latent Mixing and Part (SLaMP) editing method, which generates high-quality part-edited 2D images and confines modifications only to the target region while preserving contextual coherence. Additional regularizers, such as Gaussian prior removal, further improve flexibility by allowing changes beyond the existing context, and robust 3D masking prevents unintended edits. Experimental results demonstrate that our RoMaP achieves state-of-the-art local 3D editing on both reconstructed and generated Gaussian scenes and objects qualitatively and quantitatively, making it possible for more robust and flexible part-level 3D Gaussian editing. Code is available at https://janeyeon.github.io/romap.

We introduce Temporal Variational Implicit Neural Representations (TV-INRs), a probabilistic framework for modeling irregular multivariate time series that enables efficient and accurate individualized imputation and forecasting. By integrating implicit neural representations with latent variable models, TV-INRs learn distributions over time-continuous generator functions conditioned on signal-specific covariates. Unlike existing INR approaches that require extensive training, fine-tuning or meta-learning, our method achieves accurate individualized predictions through a single forward pass. Our experiments demonstrate that with a single TV-INRs instance, we can accurately solve diverse imputation and forecasting tasks, offering a computationally efficient and scalable solution for real-world applications. TV-INRs performs particularly well in low-data regimes, where on several datasets it achieves substantially lower imputation error, including order-of-magnitude improvements.

Prevailing activation functions such as Swish and GELU tend toward domain-specific optima, Swish was discovered via neural architecture search on vision benchmarks, while GELU dominates transformer-based language models, and neither offers any mechanism to adapt its gating shape to individual layers. This rigidity is especially consequential in transformer FFN blocks, where LayerNorm, unlike BatchNorm, does not suppress the gradient pathologies that activation choice induces across depth. We propose SG-Blend, a per layer adaptive activation that combines SSwish, a bias-corrected, parametric Swish variant we also introduce, with learnable sharpness \b{eta} and zero-centering bias γ, with GELU through a per-layer blend coefficient α, letting each layer locate its own optimum along the SSwishGELU continuum at a cost of only three additional scalars per FFN block, with \b{eta} initialized to 1.0 and learned freely via backpropagation. On BERT-style IMDB classification (5 seeds), it matches peak accuracy (81.31%) while reducing seed-to-seed variance by 42% relative to GELU. Furthermore, it generalizes to autoregressive pretraining, achieving the lowest validation perplexity (49.10) on WikiText103 among all baselines. Crucially, ablations confirm the interpolation structure itself drives these gains, delivering reliable, top-tier performance. Beyond natural language processing, we demonstrate that SG-Blend generalizes robustly to a wider variety of tasks, extending its efficacy to computer vision and other diverse domains.

Implicit Neural Representations (INRs) approximate discrete data through continuous functions and are commonly used for encoding 2D images. Traditional image-based INRs employ neural networks to map pixel coordinates to RGB values, capturing shapes, colors, and textures within the network's weights. Recently, GaussianImage has been proposed as an alternative, using Gaussian functions instead of neural networks to achieve comparable quality and compression. Such a solution obtains a quality and compression ratio similar to classical INR models but does not allow image modification. In contrast, our work introduces a novel method, MiraGe, which uses mirror reflections to perceive 2D images in 3D space and employs flat-controlled Gaussians for precise 2D image editing. Our approach improves the rendering quality and allows realistic image modifications, including human-inspired perception of photos in the 3D world. Thanks to modeling images in 3D space, we obtain the illusion of 3D-based modification in 2D images. We also show that our Gaussian representation can be easily combined with a physics engine to produce physics-based modification of 2D images. Consequently, MiraGe allows for better quality than the standard approach and natural modification of 2D images

The human brain folds in utero, primarily during late gestation. Shortly after birth, cortical folding patterns are established and remain stable thereafter, making them promising early neurodevelopmental markers. Yet it is unclear whether the representations given by current neuroimaging foundation models capture cortical folding variability. Here, we introduce Champollion, a self-supervised learning framework that learns interpretable local representations of cortical folding from structural MRI. Optimized on representative folding-related tasks, Champollion accurately captures known folding patterns across cortical regions and external datasets. In a comprehensive benchmark, it consistently outperforms neuroimaging and general-purpose foundation models. Furthermore, Champollion reveals richer genetic associations than conventional morphometric descriptors and identifies localized folding signatures associated with incomplete hippocampal inversion, prematurity, and maternal smoking. These results establish cortical folding as a rich and largely untapped source of neurodevelopmental information, and Champollion provides a unified framework for discovering, localizing and interpreting long lasting cortical folding signatures.