Covariate Shift

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10 papers in the last 28 days · 0.2% of indexed attention

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Period ending 2026-09-21

4 new papers

A weekly snapshot of new work published in Covariate Shift.

Period ending 2026-09-14

3 new papers

A weekly snapshot of new work published in Covariate Shift.

Period ending 2026-09-07

1 new paper

A weekly snapshot of new work published in Covariate Shift.

122 papers

Latest in Covariate Shift

Sep 23, 2026stat.ML

Multitask Regression with Pairwise Fusion

We study multitask regression when coefficient sharing can differ by predictor. For a given predictor, many tasks may have the same coefficient while a few differ, and the exceptional tasks need not be the same for another predictor. We describe this structure by two quantities: the number of active predictors and the total number of task coefficients that differ from the most common value for their predictor. We estimate the coefficient matrix by penalizing all pairwise coefficient differences across tasks, with an additional group penalty when predictor selection is needed. The resulting upper and lower bounds have the same dependence on these two quantities. We also consider the stronger setting in which a large set of tasks shares one entire coefficient vector. Under explicit sample-size conditions, the same pairwise estimator pools those tasks exactly, while allowing the remaining tasks to differ. Simulations and household energy data illustrate the transition between broad sharing and task-specific coefficients.
Xiaodong Li, Zhentao Li
Sep 22, 2026stat.ME

CVaR anchor regression protects against rare shifts

We study prediction in new environments when training data contain rare, large shifts. Anchor regression penalizes the average of the squared mean residual across environments. It protects against shifts in an ellipsoid determined by the second moment of the training shifts. Covering rare shifts may therefore require a large penalty, expanding the ellipsoid in every direction and reducing accuracy on common environments. We propose CVaR anchor regression, which replaces the average of the squared mean residuals with a tail average. Unlike CVaR or GroupDRO applied directly to prediction risks, it does not give environments more weight solely because their noise levels are high. We prove an exact worst-case risk guarantee under a linear structural model that allows for heteroscedastic noise. For discrete environments, decreasing the CVaR tail fraction expands the robustness set from an ellipsoid to a scaled convex hull of the training shifts and their negatives. A separate parameter controls its scale. Examples show how the method can improve protection against rare shifts while retaining accuracy on common environments. We illustrate the method on New York City taxi data.
Malte Londschien
Sep 21, 2026math.ST

Conformalized Quantile Regression and Minimax Limits of Fixed-Score Calibration under Known Covariate Shift

In this paper, we study nonasymptotic LpL^p error bounds for interval length and conditional coverage in split conformalized quantile regression (CQR). Our bounds rely on local regularity conditions and accuracy guarantees for the estimated quantiles. We further instantiate our bounds for quantile regression with sparse ReLU neural networks. We also consider covariate shift, where the calibration and test covariates have different distributions, and derive nonasymptotic bounds for this setting. We obtain matching minimax upper and lower bounds in expectation for two constructed fixed-score calibration benchmarks under known covariate shift. The bounds match for every p[1,]p\in[1,\infty] in the scalar problem and for finite pp in the KK-threshold problem; for the latter, a high-probability minimax lower bound holds for every p[1,]p\in[1,\infty].
Rustam Isaev, Anton Conrad, Denis Belomestny +2
Sep 15, 2026stat.ME

When AI Generates Covariates: Causal Typing and Estimand Drift in Sequential Experiments

AI-generated covariates from notes, conversations, images, and wearable streams can change the causal question when their roles are left unspecified. A generated feature may represent a treatment version, pre-action state, history, design variable, mediator, outcome proxy, observation process, or intercurrent event; these roles are not interchangeable. We formulate a causal type discipline for sequential experiments: a versioned representation map, a causal role classifier, a claim-status filter, and an estimand lock. The lock fixes a standardized proximal effect before generated covariates enter the analysis. Under audit correctness and standard identification assumptions, admissible role assignments preserve this estimand. We apply the established conditional-covariance characterization of compression bias to substitution of generated representations for design-relevant states. A standardized decomposition separates compression, conditional-law, and standardization drift. Further results cover mediator adjustment, post-action leakage, marker-intervention conflation, outcome-guided discovery, and state-measurement error. Cluster-level orthogonal estimators distinguish empirical and superpopulation targets under repeated sessions and missing outcomes. Simulations show that refinement helps when it retains design-relevant information, whereas design erasure, leakage, and same-data marker selection can produce bias or undercoverage. The framework places causal semantics and claim status before confirmatory inference with generated representations.
Takes Fujita, Nobutaka Hattori
Sep 14, 2026cs.LG

MoveBench: A Benchmark for Global-Scale Wildlife Movement Forecasting

Understanding and predicting wildlife movement is critical for ecology and conservation. While trajectory forecasting has advanced for human and vehicle movement, wildlife trajectories present distinct challenges: they are unconstrained in space, highly stochastic, and influenced by environmental conditions. We introduce MoveBench, the first large-scale benchmark for probabilistic wildlife movement forecasting, containing 2.6M GPS locations from 800+ individuals across 110 species in 127 countries, paired with 1.6B environmental raster tiles capturing 160 covariates known or hypothesized to influence movement. We propose a probabilistic evaluation protocol for movement trajectory forecasts, addressing limitations of point-prediction metrics for inherently stochastic phenomena. Through comprehensive empirical evaluation of four method families across multiple temporal and spatial scales, we reveal that: (1) existing predictive methods generalize better to future timepoints than to unseen individuals, (2) deep learning approaches do not consistently outperform simpler baselines, and (3) environmental covariate selection significantly impacts performance. MoveBench enables standardized evaluation of movement forecasting methods and provides a foundation for methodological advances on this ecologically important task.
Justin Kay, Shir Bar, Ellen O. Aikens +28
Sep 14, 2026cs.LG

Transfer Learning for Socioeconomic Estimation in Forced-Displacement Settings

Progress in inclusive household surveys has strengthened socioeconomic evidence for forcibly displaced populations, providing indispensable benchmarks on living conditions and welfare. However, these surveys remain resource-intensive and periodic, while conditions can change between rounds, particularly in settings affected by fragility, conflict, and violence. More frequently updated, spatially granular complementary evidence is therefore needed to identify where socioeconomic conditions may be changing between survey rounds and to inform operational prioritization. Earth observation and machine learning offer a scalable source of spatially explicit socioeconomic information. However, tools developed for general populations have not been systematically adapted and evaluated in forced displacement settings, where living conditions, settlement patterns, and displacement impacts may differ substantially. We address this gap by adapting a multimodal spatiotemporal vision transformer, pretrained on Demographic and Health Survey data from approximately 1.2 million households across 36 African countries, to forced displacement and host community settings in South Sudan, Cameroon, and Zambia. We develop and evaluate the updated, adapted model using socioeconomic indices derived from UNHCR FDS and RMS data. Our results show that satellite-derived geospatial covariates explain up to 66% of the variation in socioeconomic outcomes in camp-intersecting grids, with a mean absolute error (MAE) of 4.37 index points, and 41% in non-camp-intersecting areas, with an MAE of 5.41. The framework complements and adds value to periodic household surveys by filling critical spatial and temporal data gaps with regularly updated, model-based socioeconomic estimates. These estimates sustain insight between survey rounds and support timely humanitarian prioritization and field verification.
Steven Ndung'u, Adel Daoud, Ismael Yacoubou Djima +2
Sep 14, 2026cs.LG

Cross-Block Conditioning in Deep Boltzmann Machines for Statistical Data Fusion

Statistical data fusion combines two panels that share a block of covariates but observe disjoint outcome blocks, and in its traditional form no row observes both outcomes at once. That rules out the discriminative criterion one would rather train a Deep Boltzmann Machine with, since multi-prediction training needs ground truth for whatever it holds out. We propose observed-block multi-prediction, which restricts the multi-prediction objective to targets drawn from what each row actually observes. It is well defined for any missingness pattern and reduces to the original criterion when rows are complete. Having a discriminative criterion that survives the setting lets us ask whether the joint model is needed at all, by separating what it contributes into a representation part and an inference part. On two datasets of different kinds, a consumer purchase panel and public-domain census microdata, over grids in sample size and covariate width spanning 40 cells and 200 runs per method, almost none of the fine-tuned DBM's advantage comes from generative pre-training, which is confined to the smallest sample size on one dataset and absent on the other. It comes from conditioning on one outcome block when predicting the other. This term amounts to +0.19 and +0.36 percentage points, is positive in all 40 cells, never decays as the panels grow (it is flat on one dataset and grows on the other), and requires neither a second hidden layer nor more inference. Against baselines tuned on validation and given the same conditioning, the fine-tuned DBM is the best method in 37 of the 40 cells. The imputers that can also condition on the other outcome block mostly lose accuracy when they do, whereas the DBM gains in every cell; since fusion data cannot validate that choice, this is the property that matters.
Junichiro Niimi
Sep 12, 2026cs.LG

General Quantification of Covariate and Concept Shifts

Generalization under distribution shift remains a core challenge in modern machine learning, yet existing learning bound theory is limited to narrow, idealized settings and is non-estimable from samples. In this paper, we bridge the gap between theory and practical applications. We first show that existing definition of concept shift breaks when the source and target supports mismatch. Leveraging entropic optimal transport, we propose a key notion: γ ⁣\gamma^{*}\!-concept shifts, and derive a general error bound unifying covariate and γ ⁣\gamma^{*}\!-concept shifts, which applies to broad loss functions, label spaces, and stochastic labeling. We further develop estimators for these shifts with concentration guarantees, and the DataShifts algorithm, which can quantify distribution shifts and estimate the error bound in most applications - a rigorous and general tool for analyzing learning error under distribution shift.
Hongbo Chen, Li Charlie Xia
Sep 8, 2026stat.ML

Optimal estimation for Functional Linear Regression with Noisy Discretized Data

In this paper, we consider the scalar-on-function linear regression model under a realistic sampling scheme in which the functional covariates are observed on a regular grid and contaminated by additive noise. We propose a two-step estimation procedure: first, the underlying curves are reconstructed from the discrete noisy observations using a Fourier-based projection method; second, the slope function is estimated by a penalized least-squares criterion over finite-dimensional trigonometric spaces, with data-driven selection of the model dimension. We establish oracle-type inequalities for the prediction error, both with respect to the reconstructed curves and to the true latent curves. Under regularity assumptions on the slope function and polynomial decay of the eigenvalues of the covariate, we derive convergence rates for the prediction error and show that our estimator attains the minimax rate when the number of grid points is sufficiently large. Finally, the proposed method is illustrated on simulated data and on a real meteorological dataset.
Sixtine Sphabmixay
Sep 8, 2026cs.LG

Not All Variables Agree: Reliability-Aware Variable-Wise Gradient Surgery for Multivariate Time-Series Forecasting

In data-driven training, multivariate time-series forecasting is usually optimized with a scalar loss averaged over samples, variables, and horizons. This averaging is convenient, but the optimizer sees only the aggregated gradient, which does not reveal whether the variable-wise contributions align or oppose one another. To quantify how often this disagreement arises, we measure the variable-wise gradients directly and find that 30.6% of their pairwise cosine similarities are negative on average across seven datasets. However, conflict and harm are not the same thing. Under shared training 35 of the 64 variables do worse than a full-input single-target oracle, and the harmed fraction is not reliably predicted by how often gradients conflict. We propose Per-Variable Surgery (PV-Surgery), an optimizer-side training strategy for backbones with cache-compatible layers. One backward pass builds variable-wise gradient proxies from output-side signals and keeps the pointwise forecasting loss. Reliability-aware selection targets layers whose proxy sums closely approximate their shared-gradient slices. Conditional pooling forms anchor and conflict pools without dropping variables. Common-direction surgery aligns variable or pooled gradients with their normalized mean and restores input norms to avoid reweighting. In experiments across five backbones, seven datasets, and four horizons, PV-Surgery lowers MSE by 3.61% and MAE by 2.93% on average. For multivariate forecasting, this indicates that the variable-wise structure hidden by mean-loss training is a usable optimization signal.
Jinwoo Park, Hyeongwon Kang, Pilsung Kang
Sep 1, 2026stat.ML

Variable Selection for Feature-Based Newsvendor

Feature-based newsvendor models use observable covariates to tailor inventory decisions, aiming to balance holding and shortage costs under demand uncertainty. However, high-dimensional feature sets often hinder interpretability and inflate data collection and implementation costs. This paper studies variable selection for the feature-based newsvendor problem under a hard cardinality constraint on the number of selected features. We formulate the resulting 0\ell_0-constrained empirical newsvendor problem with 2\ell_2-regularization, establish its computational hardness, and develop a mixed-integer second-order cone programming reformulation that strengthens the standard Big-MM formulation. To enable scalability beyond exact optimization, we develop a randomized-rounding algorithm with a bi-criteria guarantee and a greedy heuristic. Statistically, we provide theoretical analysis of the resulting sparse policy estimator, including finite-sample estimation error, out-of-sample risk bounds, and support recovery guarantees. Extensive experiments on both synthetic and real data illustrate the computational and statistical trade-offs among various baselines. Our results demonstrate that the proposed variable selection framework achieves competitive out-of-sample operational costs while using substantially fewer covariates.
Zhaoliang Yuan, Jie Wang
Aug 30, 2026stat.ML

A Deep Latent Variable Framework for Jointly Modeling Missingness, Measurement Error, and Heterogeneity

Missing data, measurement error, and population heterogeneity are pervasive challenges in analyzing data arising from modern observational studies and machine learning applications. Although these problems frequently coexist and interact, they are often treated separately in existing works. We propose a unified probabilistic framework that jointly addresses these issues utilizing deep latent variable representation. The proposed method integrates a novel hierarchical tree-routed variational autoencoder with pattern-aware latent representations and calibration-based denoising. The framework accommodates missing data mechanisms, including MCAR, MAR, and MNAR, while simultaneously learning subgroup-specific and globally shared latent structure. The introduced reconvergent routing mechanism enables selective parameters to be shared across related subpopulations, which offers flexibility as well as improved statistical efficiency. Simulation studies demonstrate substantial improvements over existing deep generative imputation approaches under complex heterogeneous missingness and measurement-error settings. The proposed framework provides a principled approach for learning from noisy and incomplete data in modern healthcare and other high-dimensional applications.
Yasin Khadem Charvadeh, Grace Y. Yi, Mithat Gönen +1
Aug 30, 2026stat.ML

Neural ODE enhanced linear mixed effect models for estimating complex association patterns of time-varying covariates with the marker trajectory

Longitudinal cohort studies produce repeated data that enable the assessment of time-varying association patterns between exposures and health outcomes. Classical linear mixed-effects models (LMMs) can accommodate a large variety of association patterns while accounting for the irregularly spaced, partially observed measurement. But they require the analyst to pre-specify the functional form linking the exposure history to the outcome. We propose the Neural ODE-LMM, which embeds a Neural Ordinary Differential Equation (Neural ODE) within the linear mixed-effects framework: a learned vector field encodes covariate trajectories into a continuous-time latent state that drives both the fixed- and random-effect design, while preserving the standard LMM observation model. This retains classical likelihood-based inference while learning complex, potentially cumulative, covariate effects flexibly. All parameters are estimated by maximising a penalised marginal likelihood. To quantify covariate effects, we introduce contrasts of counterfactual predictions that compare the expected outcome under alternative covariate trajectories with variance estimated via the delta method. In simulations, the model recovers both instantaneous and cumulative-burden effects without prior specification of the functional form. Applied to the Trois-Cités (3C) cohort, a population-based study of 7{,}324 participants, the method reveals trajectory-dependent associations of BMI and fasting glucose with cognitive decline.
Zhe Aurore Li, Quentin Clairon, Cécilia Samieri +3
Aug 21, 2026stat.ML

Random Hazard Forests

Clinical data sources such as electronic health records and wearable sensors record patient status repeatedly over follow-up, often at irregular times and on different schedules for different measurements. These data create opportunities for continuously updated, individualized risk prediction. Existing approaches, however, often simplify the temporal structure for model fitting. We introduce Random Hazard Forests (RHF), a survival tree ensemble that estimates how a patient's hazard changes in continuous time as new measurements become available. The method formulates the estimation problem directly through a nonparametric hazard likelihood for predictable covariate processes. An efficient working model guides tree construction, after which flexible time-varying hazards are estimated for each terminal node. Given any predictable covariate path, each tree follows the path through its terminal nodes over time and assembles the corresponding node-level hazards into a trajectory. Averaging these trajectories across trees yields the pathwise hazard estimate. Because routing at each time uses only the covariate state available immediately beforehand, the construction accommodates internal longitudinal covariates without lookahead. Simulations and an intensive care application show that the forest accurately estimates changing risk under irregular and asynchronous covariate updates.
Hemant Ishwaran, Eileen M. Hsich, Udaya B. Kogalur +1
Aug 12, 2026cs.AI

General Probabilities of Causation with Causal Knowledge

Probabilities of causation (PoCs) characterize individual causal responses that cannot be directly observed and therefore generally require partial identification. Tian and Pearl first derived theoretically sharp bounds for binary PoCs, including the probability of necessity (PN), the probability of sufficiency (PS), and the probability of necessity and sufficiency (PNS). Mueller et al. subsequently tightened the bounds for binary PNS by incorporating causal information encoded in covariates and mediators. More recently, Li and Pearl, as well as Shu et al., extended PoCs to multivalued settings and derived corresponding theoretical bounds. These developments naturally raise the question of whether additional causal knowledge can further tighten the bounds in multivalued settings. This paper addresses this question by deriving tighter bounds for multivalued PoCs through the incorporation of causal information encoded in covariates and mediators. We illustrate the theoretical results with toy examples, while simulation studies further demonstrate that the proposed bounds are tighter than existing nonbinary bounds.
Xin Shu, Zhen Lei, Ang Li
Aug 11, 2026cs.CL

Certify or Refuse: A Cross-Model Map for Selective Risk Control with Coverage Floors under Covariate Shift

Certified selective predictors attain whatever coverage they attain; operators impose an automation floor: answer at least a ββ-fraction of shifted target traffic with at most an αα-fraction of answers wrong. Under bounded-ratio covariate shift we prove the Floor Certification Map: once that floor must be certified alongside the selection-conditioned risk αα, certification acquires a feasibility frontier and a two-resource complexity map, additive up to constants: risk in labeled source, the floor in unlabeled target samples. The rates are local, needing a regular frontier margin, slack below the local-regime threshold, and lattice conditions: pre-registered with a lattice margin for the upper bounds, compatible per-slack for the lower. The displayed split is the operational route; oracle weights also allow a labeled-source floor estimate. Three model-tagged results: a lower bound (Model-B), a matching oracle-weight upper bound (Model-A), and an implementable upper bound (Model-B') valid under a pre-registered exact stratified-shift model with nuisance cost priced explicitly. The match is across these models rather than a single-model minimax theorem, and necessarily so: over the full bounded-ratio class no unknown-weight procedure matches at any sample size (Model-B is inconsistent, witnessed at α=β=1/2α=β=1/2). The nuisance's necessity is only partially settled. Complexity tracks a localized accepted-region functional, not global effective sample size (ESS), on both sides, though a fixed-ESS separation theorem is left open; both lower-bound axes vanish as β0β\to0, so the floor creates the map. Empirically, the registered bite family diverges with log-log slope 2.002-2.002 within its pre-registered band; a 1,024-cell audit records 0 violations where the formal certificates fire; and a single-corpus SQuAD-to-NewsQA feasibility audit returns honest refusal.
Jiamiao Liu, Dewen Qiao, Yu Zhang +1
Aug 10, 2026cs.CV

Frozen Brain-MRI Foundation Models Are Site Fingerprints

Frozen foundation-model (FM) embeddings are increasingly used as off-the-shelf brain-MRI representations, on the assumption that they capture anatomy. We audit what they actually encode and find that acquisition site is a large, intrinsic component of the representation. Across two independent cohorts (ABIDE-I, ABIDE-II), three frozen 3-D encoders (brain-pretrained, CT-pretrained, and randomly initialized), and every network depth, site is linearly decodable at roughly 0.9 balanced accuracy at deep layers, exceeding the decodability of every clinical or demographic variable (sex, age, autism diagnosis) at every layer. The effect is intrinsic rather than learned: a randomly initialized encoder is already a ~0.9 site classifier on both cohorts and across three architecture families (Swin, ViT, ResNet), and site is decodable at ~0.95 directly from the raw downsampled image with no encoder, so the fingerprint reflects low-level image statistics that any encoder preserves rather than a product of pretraining. Residualizing measured population covariates leaves site decodability essentially unchanged, indicating an acquisition- rather than population-driven effect. A nonlinear probe matches the linear one, so the fingerprint is fully linearly accessible. The site subspace is removable post hoc by iterative null-space projection or ComBat (site decodability 0.94 -> 0.07/0.00), and is a site-attribution concern for shared or federated embeddings; but for dense segmentation this removal is not free, because site and anatomy occupy an entangled linear subspace (a matched-rank random-direction projection is Dice-neutral, whereas removing the site subspace is destructive). We recommend site-audited use of frozen brain-MRI FMs and release an open audit toolkit.
Saman Rahbar
Aug 8, 2026cs.LG

CLAM: Causal Spatial Disaggregation to Infer Local Effects From Coarse Data

Learning fine-grained spatial patterns from coarse-resolution data is challenging, especially in causal settings where high-resolution effects must be inferred from aggregated interventions and outcomes. We introduce CLAM, a method for estimating localized causal effects from coarse observations by exploiting high-resolution contextual covariates that modulate these effects. By jointly learning the causal mechanism and a disaggregation mapping, CLAM captures interactions that are missed when addressing these problems independently. The method supports localized effect estimation, counterfactual reasoning, and principled outcome disaggregation, and reliably captures spatially varying causal effects across diverse settings. This is particularly relevant for applications such as public health and environmental policy, where decisions are made at broad scales despite substantial local heterogeneity. Code is available at https://github.com/gerritgr/clam
Gerrit Großmann, Sumantrak Mukherjee, Sebastian J. Vollmer
Aug 6, 2026cs.LG

Multivariate Time Series Forecasting needs Cross Variable Loss

Multivariate time series forecasting presents unique challenges because future variables often co-evolve under shared system dynamics. While existing studies mainly focus on cross-variable dependencies in historical observations, dependencies among future values are much less explored. Specifically, modern forecasting models largely follow the Direct Forecasting (DF) paradigm, generating multi-step forecasts with point-wise objectives that do not explicitly constrain cross-variable structure. In this work, we show that the DF objective is mismatched in the presence of cross-variable and lagged dependencies, revealing an objective gap. To address this issue, we propose \textbf{C}ross-\textbf{V}ariable \textbf{Loss} (CvLoss), a plug-in structural regularizer that constrains forecast residuals on a cross-variable graph. CvLoss penalizes inconsistent edge-wise residual differences over forecast patches, encouraging consistency across both synchronous and asynchronous interactions. Our experiments show that CvLoss consistently improves competitive forecasting models, outperforms representative learning objectives, and is compatible with a variety of forecasting backbones.
Kuiye Ding, Yifan Hu, Hanchen Wang +1
Aug 5, 2026stat.ME

Nonparametric Goodness-of-fit Testing under Covariate Shift

This paper develops procedures for nonparametric goodness-of-fit testing under covariate shift, where labelled data are drawn from a source population but goodness-of-fit is evaluated for a target population. The distribution mismatch is quantified by either a bounded moment condition or a sub-exponential tail condition on the target-to-source density ratio. Our method combines truncated importance-weighting kernel ridge regression with a multiplier bootstrap to construct confidence sets for the regression function. The truncation stabilizes the importance- weighting kernel ridge regression as well as the bootstrap calibration, making our approach applicable even when the density ratio has heavy tails. We prove nonasymptotic validity and sharpness of the resulting confidence sets under suitable operator compatibility conditions, and establish explicit error rates for coverage probability under specific conditions on the target- to-source density ratio and on the spectral decay of the kernel integral operator. Numerical experiments corroborate our theoretical findings.
Zhen Hou, Dong Xia
Aug 4, 2026stat.ML

Minimax-Optimal Semiparametric Contextual Dynamic Pricing with Multimodal Revenue

We study contextual dynamic pricing with arbitrary covariate sequences and bounded, possibly nonbinary purchase quantities. Demand follows a semiparametric surplus-index model with an unknown linear valuation parameter and an unknown Hölder-smooth response. We impose neither concavity nor strong unimodality on revenue and allow nonunique optimal prices. We develop a pilot-corrected layered decision-partitioning policy that combines directional pilot estimation, local polynomial learning, predictable data assignment, and global action elimination. Pilot correction removes the first-order effect of valuation-parameter error, while permanent labels enable concentration under adaptive sampling. The policy attains the minimax smoothness-dependent horizon rate up to logarithmic factors; a matching lower bound already holds for a constant-context binary-demand subclass.
Xueping Gong, Zhuoluo Zhang, Zhaowei Miao +1
Aug 4, 2026stat.ML

Causal Inference with Unstructured Outcomes

Causal inference has traditionally centered on scalar outcomes: whether a patient recovers, how much a worker earns, or how many visits a website receives. Modern studies increasingly ask causal questions about outcomes with richer form, such as clinical notes, open-ended survey responses, and images. A hospital may want to know how an AI documentation tool changes the notes physicians write, or how a nurse training program alters what patients say in survey responses. For such outcomes, the usual average treatment effect is ill-defined: one cannot meaningfully subtract one text or image from another. To this end, we propose a causal query for unstructured outcomes. The key idea is to learn what features of the outcome are most causally affected by the treatment, which we call the maximally contrasting feature (MCF). To estimate the MCF, we learn a feature-scoring function that maps each outcome to a scalar and exposes the sharpest contrast between treated and control potential outcomes. We develop identification conditions and estimation algorithms for this query, and extend it to heterogeneous effects by allowing the feature-scoring function to depend on observed covariates. We also handle settings where both the treatment and the outcome are unstructured. Empirical studies on text and images show that the algorithm recovers salient aspects of an outcome changed by a treatment.
Kevin Christian Wibisono, Yixin Wang
Aug 3, 2026cs.LG

Can Training Logs Make Model Comparisons More Precise?

Comparing stochastically trained models requires estimating both a performance difference and its uncertainty from repeated runs. We study whether training logs from those same runs can make such comparisons more precise. Because training-log covariates are produced during training rather than measured before it, we use arm-specific covariate adjustment: each model is adjusted only with statistics from its own runs, and the raw mean difference remains the reported effect. In a vision study spanning three architectures and three datasets, simple adjustments based on early training logs often reduce uncertainty in model comparisons. The main limitation is covariate selection. Broadly searching the log pool for the most correlated statistic often adds more noise than it removes, even when useful statistics exist in hindsight. Training logs therefore appear useful for more precise model comparisons, but only when the adjustment avoids large selection noise.
Wei-Jung Huang
Aug 3, 2026cs.LG

GLAIM: Learning Global and Local Adaptive Inter-Variable Dependency for Multivariate Time Series Imputation

Multivariate time series imputation is fundamental to downstream analysis, yet modeling inter-variable dependencies with incomplete observations remains challenging. Existing methods learn global dependencies across samples or dynamic local dependencies per sample. Global dependencies are stable but adapt poorly to sample variations and temporal non-stationarity, whereas local dependencies are adaptive yet unreliable when observations are insufficient, causing erroneous information propagation. To address these limitations, we propose GLAIM, a Global-Local Adaptive Inter-variable Dependency Modeling framework for multivariate time series imputation. GLAIM comprises two complementary components. The Stable Global Dependency Constructor derives robust global inter-variable dependencies from complementary temporal representations, providing a stable backbone less affected by sample-specific missingness and noise. The Sample-Conditioned Dependency Refiner adapts this backbone to each sample and time step using its temporal state and available observations, enabling reliable local refinement under incomplete observations. Extensive experiments on nine real-world datasets demonstrate that GLAIM achieves state-of-the-art performance under random and block missingness, remains robust to missing-rate shifts, and benefits from its complementary global and local components. Code is available at https://github.com/LuRenjias/GLAIM.
Mingyang Wang, Rongwen Li, Xiao Wang +1
Aug 1, 2026stat.ME

Augmented Inverse Hybrid Weighting: Robust Inference under Deterministic and Random Distribution Shifts

Reweighting source samples to match a target covariate distribution is a standard response to distribution shift when generalizing evidence from one population to another. This strategy is well suited to deterministic, learnable covariate discrepancies, but can be insufficient when source--target population differences also contain changes beyond covariate shift or when estimation of the density-ratio weights is unstable. To address this challenge, we introduce a new model that allows non-systematic changes between two population laws after systematic shifts are accounted for. Such residual shift is modeled as random perturbations to the probability space that cannot be represented in a learnable way. In this way, we separate systematic shifts, treated as bias and corrected by reweighting, from residual random perturbations, treated as distributional uncertainty and handled through dataset pooling. Under pure random perturbations, this principle yields Augmented Inverse Distance Weighting (AIDW), which uses regression augmentation and variance-optimal dataset-level pooling. For mixed shifts, we develop Augmented Inverse Hybrid Weighting (AIHW), which interpolates between AIDW and standard augmented importance weighting. Both methods trade off sampling uncertainty and distributional uncertainty via a \emph{distributional distance} that describes the strength of random perturbations. We establish asymptotic properties of the methods, together with plug-in guidance for choosing tuning parameters and model diagnostic tools. Experiments on three real-world multi-site datasets demonstrate consistent reductions in mean-squared error compared with standard weighting baselines, along with substantially improved empirical coverage in settings where covariate-shift adjustment alone undercovers, showing the robustness of the proposed methods across diverse distribution shift scenarios.
Ying Jin, Ying Jin, Dominik Rothenhäusler
Jul 31, 2026cs.LG

TFGformer: Multivariate Time Series Forecasting via Time-Frequency Graph Learning and Covariate Fusion

Large-scale multivariate time series from heterogeneous IoT sensors demand accurate long-term forecasting for resource scheduling and predictive maintenance. While recent time series foundation models exhibit strong generalization, they rely on static parametric knowledge and lack dynamic access to external historical patterns during inference. Retrieval-Augmented Generation (RAG) offers a potential remedy, yet its application to time series forecasting is challenged by magnitude variations across heterogeneous sources and the mismatch between historical similarity and future consistency. We propose CrossRAG, a retrieval-augmented forecasting framework that integrates Shape-Aware Memory (SAM) with RevIN normalization for magnitude-robust shape-level retrieval, Future-Consistent Contrastive (FCC) learning to distinguish informative references from hard negatives with similar history but divergent futures, and Cross-Attention Temporal Fusion (CATF) to fuse retrieved historical--future reference pairs into the backbone's representations at the representation level. Experiments on seven public benchmarks show that CrossRAG consistently outperforms both parametric-only baselines and existing retrieval-augmented forecasting methods.
Yu Sun, Yuan Chang, Xiaohou Shi +1
Jul 29, 2026cs.LG

CalTwin: Towards Calibrated, Shift-Robust Medical World Models via Fisher-Information Regularisation

Medical world models aim to learn a latent state of patient or organ physiology and a transition function that forecasts how that state evolves under interventions, supporting downstream tasks from imaging-based diagnosis to digital-twin treatment planning. Two failure modes threaten the reliability of such models in clinical deployment: (i)\emph{covariate shift}, because training data are fragmented across hospitals, scanners, and time, so the feature distribution seen by the latent-dynamics predictor differs across fragments and from the distribution at deployment; and (ii)\emph{confidence misalignment}, because multi-step forecasts are often overconfident exactly where clinical risk is highest. We argue that both problems admit a unified treatment via a single lightweight regularisation objective, \textbf{CalTwin}, which combines a Fisher-Information-based shift penalty adapted from our prior work on fragmented covariate-shift remediation~\cite{khan2025mitigating,khan2025causal} with a Confidence Misalignment Penalty adapted from our prior work on calibrated vision-language classification~\cite{khan2025confidence}, applied here to a GRU-based medical world model's latent transition predictor. We derive the combined objective, establish which proof steps transfer from the classification setting without modification and which require adaptation, and evaluate it on the PhysioNet 2019 Sepsis Challenge, treating the two hospital systems as sequential training fragments and the unseen system as an out-of-distribution test. CalTwin reduces OOD next-step latent-state MSE by 9.1% relative to the no-penalty baseline (FIM penalty alone accounts for 7.0%); the ECE reduction from the Confidence Misalignment Penalty is real but small (0.7% for CalTwin, 1.3% for CMP alone).
Behraj Khan, Shabir Ahmad, Syed Ahmad Chan Bukhari +1
Jul 29, 2026cs.LG

From Unsupervised Subgroups to Hypothetical State-Intervention Policies: An Evaluation of Selected Subgrouping Methods in Observational Health Data

Conventional subgroup analyses can yield unstable and difficult-to-interpret conclusions, especially in observational biomedical data where each individual is observed under only one exposure state, true individual treatment effects are unavailable, and causal structure is uncertain. We investigate whether subgroups constructed from pretreatment characteristics, without using exposure, outcome, or estimated treatment-effect information, can serve as interpretable units for budget-constrained policy prioritization. We propose a framework combining causal-discovery-informed covariate selection, discovery-evaluation sample splitting, inductive unsupervised clustering, uncertainty-aware subgroup selection, and held-out doubly robust policy evaluation. We compare K-means, hard, membership-weighted, and stochastic Fuzzy C-means, Bayesian Gaussian mixture models, and a supervised causal-forest-derived CATE-tree comparator. Policies are evaluated under a 70% budget for hypothetical obesity-to-non-obesity and elevated-to-lower-glucose state shifts in the PIMA Indians Diabetes dataset and for a lifetime-smoking-history contrast in NHANES. The highest estimated ungated utilities were 0.799 for the BMI policy using Bayesian GMM, 0.735 for the glucose policy using hard or membership-weighted FCM, and 0.775 for the smoking-history policy using K-means. All paired 95% confidence intervals for policy-risk differences included zero, and no comparison remained statistically significant after Holm adjustment. Bayesian pooling generally preserved ungated allocations, whereas Empirical Bernstein gating was more conservative. Policies with similar estimated utility could nevertheless prioritize different individuals. The findings should be interpreted as assumption-dependent decision-support evidence for hypothetical state contrasts rather than proof of intervention benefit.
Vasundhara Acharya, Bulent Yener
Jul 28, 2026cs.LG

PIcsC: Partitioning-Induced Covariate Shift Correction

Covariate shift across training-data partitions biases model selection and parameter estimation in cross-validation, lifelong learning, and federated learning. We propose \textit{Partition-Induced Covariate-shift Correction} (\texttt{PIcsC}), a Fisher information-based regularization framework that mitigates distribution mismatch between data partitions and a reference distribution. \texttt{PIcsC} approximates partition divergence using the Fisher Information Matrix (FIM) and incorporates the resulting statistic as a regularizer during optimization. The same formulation applies to both centrally partitioned datasets (batches or cross-validation folds) and inherently distributed data (federated clients or decentralized nodes), requiring only partition-local gradient statistics rather than raw data. We further introduce a conditional adaptation mechanism that combines FIM shift with KL divergence to detect significant distribution shifts and activates regularization only when necessary. Experiments on more than 40 datasets demonstrate consistent improvements under both natural and synthetic covariate shift. On fragmented batch and fold settings, \texttt{PIcsC} reduces fragmentation-induced performance degradation by more than 20% and 25%, respectively. On seven federated learning benchmarks, it consistently outperforms FedAvg, FedProx, and SCAFFOLD by 3 -5 percentage points without requiring client-specific personalization. These results demonstrate that Fisher information provides an effective and unified mechanism for mitigating partition-induced covariate shift across both centralized and distributed learning.
Behraj Khan, Behroz Mirza, Syed Ahmad Chan Bukhari +1
Jul 23, 2026stat.ME

Longitudinal Random Forests for Sparse and Irregular Response Trajectories

Longitudinal studies often collect data at sparse, irregular, and unequally spaced time points. Such heterogeneity is often driven by subject-specific covariates, yet existing methods have been restricted to a scalar endpoint value, completely neglecting the underlying response trajectories. We propose a novel Longitudinal Random Forest (LRF) framework that leverages tree-based ensemble machine learning with adaptive node-wise longitudinal trajectory estimation. The LRF framework makes five methodological contributions. it captures each subject's individual response trajectory while simultaneously accommodating within-node correlation, between-node heterogeneity, and nonlinear and interactive covariate effects. It introduces a novel trajectory-based splitting criterion that maximizes trajectory separation while incorporating a size-weighted penalty; it provides two variants, Principal Analysis by Conditional Expectation (LRF-PACE) and adaptive linear mixed-effects models (LRF-adaptiveLMM), which employ nonparametric and semiparametric node-wise smoothers, respectively, while learning covariate effects in a data-driven manner. It provides a comprehensive interpretation of covariates using both the classical trajectory-based permutation variable importance measure (PVIM) and a newly proposed finite-way interaction frequency count, and it not only predicts entire trajectories for new subjects but also forecasts future trajectories for existing subjects. Extensive simulation studies demonstrate that LRF achieves superior performance over several competing methods, even under severe sparsity. The practical significance of the LRF framework lies in its ability to address five important clinical questions.
Yangsheng Wang, Xiaotian Dai, Haoda Fu +1
Jul 22, 2026stat.ML

Adaptive deep nonparametric regression from dependent data under covariate shift

Covariate shift often occurs because, in many real applications, the source and the target observations may be generated from different distributions. In this case, the standard metric under the source distribution is not appropriate. This paper considers deep neural network estimators for nonparametric quantile and Huber regression under covariate shift and from dependent observations. We deal with a generalized Bernstein-type inequality that is satisfied by many classical models, including i.i.d. observations, φφ-mixing, strong mixing, and C\mathcal{C}-mixing processes. To perform the covariate shift phenomenon, we propose a sparse-penalized deep neural network (SPDNN) estimator that takes into account the discrepancy between the source and target distributions of the data. When the density ratio (between the source and target distributions of the covariate) is unknown, a two steps pre-training procedure is carried out: the first step is devoted to the construction of a least squares SPDNN estimator of the density ratio; which is used in the second step to perform a pre-training reweighted SPDNN estimator of the regression function. For both the quantile and the Huber regression, non-asymptotic error bounds of the proposed SPDNN estimators are established in the class of Hölder smooth functions. These estimators can adaptively attain (up to a logarithmic factor) the minimax optimal convergence rate from i.i.d. data as well as from several classical time series models.
William Kengne, Ehud Mossa Ockegna
Jul 21, 2026stat.ME

Deep Shape Regression for Planar Curves with Multimodal Covariates

The shape of a planar curve is the geometric information that remains once translation, rotation, scale and reparametrisation are removed and is of interest in many health applications, e.g. in neuroimaging. We propose a deep shape regression model for open planar curves that admits multimodal and high-dimensional covariates. Representing curves as complex-valued functions, we show that the conditional full Procrustes mean is the leading eigenfunction of the conditional covariance. To estimate this covariance surface, we propose a novel deep conditional covariance smoother with modality-specific encoders - e.g. splines for scalar covariates and convolutional networks for images, which classical spline smoothers cannot accommodate. Our model is by construction invariant to the translation, rotation and scaling of the input curves and handles sparsely and irregularly sampled curves. We further provide an algorithm for elastic mean estimation that also removes parametrisation by iterating covariance smoothing, rotational alignment and parametrisation alignment. We illustrate the method on simulated outlines with known conditional mean and multimodal covariates, and give a first application to hippocampal outlines from the ADNI cohort, recovering covariate effects consistent with the literature. Code is available at https://github.com/mpff/dnn-shapes.
Manuel Pfeuffer, Roshan Prakash Rane, Hadya Yassin +2
Jul 20, 2026math.ST

Unveiling Invariant and Transferable Latent Factors Across Heterogeneous Environments via ATLAS

This paper considers a multi-environment factor model in which high-dimensional covariates are collected from heterogeneous environments, with auxiliary labels available in a subset of these environments. The joint distribution of the covariates may vary across environments, whereas the latent structure is decomposed into invariant factors with shared loadings and heterogeneous factors with environment-specific loadings. Such a model is motivated by transfer learning and latent factor regression, where one seeks stable low-dimensional representations for both interpretation and robust out-of-sample prediction of the response YY. Leveraging the invariance principle, we show that the invariant and heterogeneous factors are disentangled under a minimal structural condition. Based on this, we propose ATLAS, an Auxiliary-label and invariance-guided Transfer via Latent Alignment across heterogeneous environmentS. ATLAS is a unified procedure that leverages the invariance principle to separate aligned invariant and unaligned heterogeneous factors, and further exploits supervision from auxiliary labels to extract prediction-invariant and transferable factors from those unaligned heterogeneous factors. ATLAS yields near-oracle performance for downstream latent factor regression, enables transferable prediction in new environments through the full latent signal when auxiliary labels are available, and reduces to robust invariant-factor-only prediction otherwise. We establish sharp non-asymptotic error bounds for recovering invariant and heterogeneous factors, identifying all the response-invariant factors, and estimating the invariant signal in YY.
Yihong Gu, Katherine Liao, Tianxi Cai
Jul 20, 2026stat.ML

COVAriance-Induced Fairness Gap Penalty for Subgroup-Fair Clustering

Fair clustering aims to make cluster assignments independent of sensitive attributes, but this goal becomes challenging when multiple sensitive attributes jointly define many subgroups. In such settings, directly extending existing fair clustering algorithms is computationally expensive or numerically unstable, especially when the number of subgroups grows exponentially and some subgroups contain only a few instances. To address these challenges, we define a subgroup-fairness gap for clustering and derive a covariance-based surrogate that exactly matches this gap. We then introduce a continuous relaxation of the surrogate, enabling efficient gradient-based optimization and yielding our proposed algorithm, COVA-FC. We also show that subgroup fairness alone does not imply marginal fairness, and extend our framework to capture a subgroup-marginal-fairness gap. Experiments on benchmark datasets show that COVA-FC achieves competitive cost-fairness trade-offs and improves computational efficiency over existing baselines in both subgroup and higher-order marginal settings.
Kyungseon Lee, Hankyo Jeong, Kunwoong Kim +2
Jul 17, 2026eess.AS

A Geometry-Limited Identification Floor and Its Consequences for Voice-Clone Attribution in Professional Voice Actors

A voice actor's voice is their asset, and AI cloning directly threatens it. The natural defense flags the enrolled actor whose embedding similarity to a suspect recording crosses a threshold. We show it fails where it is most needed: trained voices crowd the embedding space, and each actor performs many styles. On 1,168 Japanese voice actors (56,568 segments, ~63 h), a misidentification floor survives calibration, score normalization, and discriminative re-ranking (linear and nonlinear, including PLDA): the residual is a limit of the embedding geometry, not of the back-ends we evaluate. The best ensemble still leaves ~2.6% closed-set misidentification, several-fold above matched controls; session-disjoint, re-ranking lowers the floor only to 13.0%. The same crowding drives false attribution: on a generic English encoder, roughly half the clones of non-enrolled people falsely accuse an enrolled actor, while -- by a separate real-vs-synthetic shift -- 32% of Seed-VC clones of enrolled targets are missed at the same threshold; one operating point couples the two, and none escapes both. A domain-matched, voice-actor-trained encoder mitigates substantially (a four-fold gender gap vanishes; wrongful misattribution falls to 1.5-10%), but does not remove the floor. Controls (codec, channel, vocoder, content) support reading the miss rate as a real-versus-synthetic covariate shift, not missing speaker information. Fixed-threshold clone attribution is thus unreliable here, and on a generic encoder unfair. Robust attribution must extend spoofing-aware speaker verification to open-set 1:N (anti-spoofing gate, domain-matched encoder, per-speaker calibration, abstain option), and even then supports detection, not autonomous enforcement.
Shuhei Kato
Jul 16, 2026cs.LG

Evaluating covariate balance for long time horizon Markov decision processes

This article explores the application of covariate balance diagnostics for detecting the presence of hidden confounding/model miss-specification in studies applying offline reinforcement learning (RL) to deriving optimal treatment recommendations. The results demonstrate that, either there is a high risk of bias within existing offline RL studies for treatment recommendations or, existing covariate balance metrics are not sufficient to assess such studies. Regardless, existing offline RL studies cannot be concluded as being statistically robust. The conclusions propose future research directions for obtaining more methodologically robust applications of offline RL to treatment recommendation problems.
Joshua Spear, Rebecca Pope, Neil J Sebire
Jul 16, 2026cs.CV

Causal-Adversarial Probing of Clinical Covariates for Prostate MRI Grading

Deep learning models for prostate MRI-based cancer grading may encode clinical covariates that either reflect useful disease-related signal or non-generalising shortcut information, but their role is usually assumed. We propose a causal-reasoning framework for probing covariate dependence in MRI-based International Society of Urological Pathology (ISUP) Grade Group prediction. Rather than treating mpMRI as a direct cause of grade, we model MRI appearance and ISUP grade as observations of latent tumour pathology, and test whether candidate clinical variables act as nuisance correlates, disease-related proxies, or irrelevant covariates in the learned representation. We implement this using an adversarial framework that suppresses the decodability of individual clinical covariate at a time while preserving MRI-based grade prediction. The approach is developed and evaluated on 2,903 prostate MRI examinations, with external validation on 576 patients. We report a set of interesting and previously under-explored imaging-to-clinical-variable interactions in the context of deep learning generalisation. For examples, in binary ISUP Grade Group 2\geq2 classification, suppressing age, BMI, and alcohol use improved AUC by 1.23%, 0.84%, and 1.42%, respectively (all p < 0.05), suggesting reduced non-generalising covariate information; In contrast, suppressing PSA and prostate volume degraded AUC by 1.91% and 7.61% (all p < 0.001), indicating that these variables carried task-relevant signal. These findings show that adversarial covariate suppression can provide a practical representation-level analysis for distinguishing potentially harmful dependence from informative signal in prostate MRI grading models.
Yipei Wang, Shiqi Huang, Wen Yan +6
Jul 15, 2026stat.ML

Multimodal Empirical Bayes Variational Autoencoders for Joint Longitudinal and Time-to-Event Modeling

Longitudinal tumor measurements, dropout information, and genetic covariates provide complementary information about treatment response, but integrating these data sources within a single population modeling framework remains challenging. We extend the empirical Bayes variational autoencoder (EB-VAE) framework to joint longitudinal and time-to-event modeling and evaluate it on tumor growth data. The framework represents inter-individual variability using latent individual effects regularized by a covariate-conditioned empirical Bayes prior, while a decoder maps these latent effects to tumor-volume trajectories. To account for informative dropout, the decoder was augmented with a hazard model, yielding joint predictions of tumor growth and time to dropout. We further compared fully neural and hybrid semi-mechanistic decoder formulations and incorporated genomic covariates through a genetics-conditioned prior adaptation. The hybrid decoder recovered treatment-effect parameters broadly consistent with previously reported nonlinear mixed-effects estimates, while achieving prior predictive performance comparable to the neural decoder. The joint model reproduced both tumor-volume distributions and dropout patterns in held-out individuals, and genetic conditioning improved individual-level prior predictions in both cutaneous melanoma and breast cancer experiments. Stability selection identified several biologically plausible genetic indicators, including alterations in BRAF, NRAS, NF1, and MDM2. These results demonstrate that EB-VAE provides a flexible probabilistic framework for combining neural dynamics, mechanistic structure, time-to-event modeling, and high-dimensional covariates in pharmacometric applications.
Anders Sjöberg, Nils Olsson, Marcus Baaz +1
Jul 14, 2026stat.ML

ANGLE: Angular Neural Generative Learning via Engression

Circular data, representing angles or directions, are frequently encountered in computer vision, biology, geology, and meteorology. Traditional regression targets the conditional mean, which is often geometrically misleading for circular responses under multimodal, skewed, or asymmetric data structures. To address these limitations, a lightweight deep generative framework, namely ANGLE, is introduced for non-parametric distributional regression on the circle. The full conditional distribution of an angular response, given Euclidean and circular covariates, is learned through a generative map optimized via a generalized circular energy score (GCES) loss. Desirable theoretical properties, including the strict propriety of the loss and the rotational equivariance of the estimators, are established. Furthermore, both pre- and post-additive noise models are accommodated. A unified toolbox is provided for advancing previously underexplored challenges in circular statistics: extrapolation, sufficient dimension reduction, and conditional distribution equality testing. The framework's efficacy is demonstrated through extensive simulations and real-world applications. Specifically, the proposal is utilized for object pose estimation from imagery and wind direction prediction, which are integral to surveillance, autonomous vehicles, and energy systems, respectively. Superior predictive performance and robust uncertainty quantification of the proposed method in these tasks are revealed.
Rajdeep Pathak, Archi Roy, Tanujit Chakraborty
Jul 14, 2026cs.LG

AdaPCLA: Adaptive Prior-Calibrated Logit Adjustment for Long-Tailed Longitudinal EHR Generation

Generative modeling of longitudinal Electronic Health Records is increasingly important for privacy-preserving research, yet standard autoregressive models tend to underrepresent the co-occurrence structure of tail events (i.e., diseases, symptoms), reducing the fidelity and faithfulness of generated data for rare subpopulations. To this end, we propose AdaPCLA framework, which enables generative models to adaptively fit and generate EHR data through a data distribution-aware training strategy; this is achieved by internalizing data knowledge parameters by simulated annealing training. It also supports training-free adaptation to a diverse clinical population for generation through zero-shot distribution control. Moreover, our theoretical analysis characterizes rare-code logit updates through the label-wise empirical NTK and derives a prior-internalization bound for how annealing speed and NTK conditioning affect retained prior signals. Experiments on real-world data show that AdaPCLA achieves consistent gains in tail plausibility, downstream utility, and zero-shot control; in particular, it improves TailPairSeen over HALO by 114.2% on MIMIC-III and 65.1% on MIMIC-IV, outperforms GPT-style generation by 3.5% F1 for zero-shot cross-population adaptation.
Shuai Cui, Chen Wenxuan, Wenjie Du +3
Jul 9, 2026cs.LG

CASL-VAE: Learning Structured Latent Variables from Unpaired Data for Semi-supervised Clustering and Paired Sample Generation

Quantifying variability in a target population relative to a reference population is central to many scientific and clinical problems (e.g., diseased vs. healthy). Yet, without paired data and in the presence of heterogeneous target variation, existing methods struggle to separate multiple modes of target-specific variation. We propose \textit{CASL-VAE}, a deep contrastive latent variable model that learns structured latent generative factors from unpaired data. CASL-VAE factorizes variation into continuous common latent factors shared across populations and hierarchical salient latent factors that model target-specific heterogeneity as discrete subtypes and continuous within-subtype variation. Using variational inference, we show how approximate joint likelihood optimization over reference and target domains can be performed using unpaired data, providing a principled basis for paired-sample generation and cross-domain analysis. We validate CASL-VAE on semi-synthetic neuroimaging data, demonstrating improved subtype recovery and paired-sample generation compared to baseline clustering and generative models. We also validate its ability to reveal biologically plausible heterogeneity in Alzheimer's disease.
Sai Spandana Chintapalli, Pratik Chaudhari, Christos Davatzikos
Jul 7, 2026cs.LG

Heckman-Corrected Epistemic Uncertainty: Selection on Unobservables Defeats Importance Weighting

Training data for machine learning is routinely collected by a selection process the model never sees: loans are observed only when granted, outcomes only when a test was ordered. The standard fixes -- importance weighting, covariate-shift correction, MAR imputation -- assume selection is ignorable given observables. Econometrics solved the harder case in 1979: Heckman's two-equation model jointly fits a probit selection equation and an outcome equation linked through correlated errors, and the inverse-Mills-ratio term corrects for selection on unobservables, where importance weighting is structurally helpless. We instantiate this for deep epistemic uncertainty: a deep outcome network, a linear selection head, and a joint bivariate-normal likelihood over all units, ensembled for predictive variance. In a controlled generator where sampling probability depends on an unobservable correlated (rho up to 0.9) with the outcome noise, deep ensembles, MC dropout, and GP baselines are overconfident exactly where data was avoided: coverage of nominal-90% intervals falls to 64.4% at rho=0.9, and importance weighting with oracle propensities does not fix it (43.1%) -- reweighting corrects the covariate distribution, not the conditional bias E[y|x,selected] != E[y|x]. The Heckman correction restores coverage (88.9%) when the selection equation has an instrument -- a variable affecting selection but not the outcome -- and degrades measurably without one (40.3%); we chart this honesty curve rather than hide it. On real tabular data with induced MNAR selection, the corrected intervals are the best-calibrated (lowest region-ECE) non-oracle method in selected-against regions; baselines matching its raw coverage do so only by over-widening everywhere. Our estimators reproduce classic Stata output to seven digits. We state which identification regime a practitioner is in, and release the code.
Gunner Levi Howe
Jul 6, 2026stat.ML

Integrating Neural Encoders in Bayesian Generalized Linear Mixed Models for Multimodal Data

Scalable Bayesian inference for generalized linear mixed models (GLMMs) provides uncertainty-aware analysis of correlated longitudinal data, but existing scalable approaches largely assume low-dimensional tabular predictors and do not directly accommodate high-dimensional modalities such as images and text. We address this limitation by learning one or more modality-specific neural encoders jointly with a GLMM objective, then performing variance-corrected stochasticgradient MCMC for the GLMM parameters conditional on the learned representation. This conditional-Bayes design combines supervised representation learning with posterior uncertainty quantification for population-level effects, subjectspecific heterogeneity, and modality-level random slopes. The resulting model preserves interpretable fixed and random effects for structured covariates and learned modalities while scaling gracefully to large longitudinal datasets. In simulation studies, our method recovers posterior means and variance estimates from full-data MCMC benchmarks after covariance correction. We further evaluate uncertainty through parameter-level interval coverage in simulations and predictive calibration on held-out data. Applications to glaucoma progression and adolescent mental health demonstrate that the framework allows nuanced assessment of the relative importance of each modality on both individual and population levels without sacrificing predictive performance.
Yuankang Zhao, Youngsoo Baek, Felipe A. Medeiros +2
Jul 5, 2026stat.ML

On Pairwise Quantile Regression -- Statistical Guarantees and Applications

Quantile regression provides a powerful tool for summarizing the conditional distribution of a real valued random variable (r.v.) of interest YY as a function of covariates ZZ in cases where it shows a large dispersion with high probability, going beyond the situation where standard least square regression is informative/predictive. This article aims to extend this methodology to the pairwise case, when the variable to be explained takes the form of a similarity function between two independent observations, such as pixelated ID photos, as input data of biometric systems) and the explanatory variables take the form of a pair of covariates of the observations, such as the age or the hair color. We establish theoretical guarantees for solutions of this statistical learning problem, considered here as empirical minimizers of a pairwise version of the pinball loss. Leveraging sharp concentration results for UU-processes, we prove generalization bounds and identify mild conditions under which fast learning rates can be achieved. Confirming the probabilistic analysis, experiments based on simulation data also provide solid empirical evidence of the validity of the methodology promoted here for pairwise quantile regression. Finally, its usefulness from an application perspective is demonstrated by a detailed study aimed at analyzing errors in similarity scoring for facial recognition.
Romain Thérézien, Stephan Clémençon, Fantin Girard +1
Jul 5, 2026cs.LG

Exogenous Dropout: A Simple, Strong Baseline for Corruption-Robust Time Series Forecasting with Covariates

Time series forecasters that use exogenous covariates are fragile in deployment: when those covariates are noised, temporally misaligned, or missing, strong exogenous-fusion and exogenous-adapted models can degrade far above the endogenous-only floor. We study whether such robustness requires specialized architectures, or whether it can be obtained through a simple training intervention. We propose exogenous dropout, a model-agnostic method that randomly zeros whole exogenous channels during training. Across electricity-price forecasting, reservoir hydrology, and meteorology, exogenous dropout substantially improves robustness under Gaussian noise, temporal misalignment, and fully missing channels, while preserving clean accuracy. Applied to a dual-correlation network, it yields the most robust model in our experiments, outperforming a deliberately strong bounded architectural foil, BoundEx, which combines a learnable gate, a fallback residual to the endogenous backbone, and per-channel exogenous FiLM modulation. Architecture-by-dropout ablations, gate-behavior diagnostics, and a representation-level bound show that explicit architectural boundedness is not necessary for this robustness: an unbounded model trained with exogenous dropout is more robust than the bounded model in every domain. We release a corruption-robustness benchmark and recommend exogenous dropout as a simple, strong baseline for future work on time series forecasting with covariates.
Hao Hu, Xue-shan Ai
Jul 5, 2026stat.ML

Optimal Mixture-of-Experts Model Averaging for Conditional Generative Models

Conditional generative models have emerged as powerful tools for sampling from target conditional distributions, driving substantial advances across a wide range of scientific and applied domains. As these models proliferate, practitioners often face multiple plausible generators whose performance can vary with the task, data, or input condition. We propose an optimal model averaging framework for conditional generative models, allowing candidate generators to be combined even when they are accessible only through conditional samples without tractable densities. Specifically, we use a sample-based maximum mean discrepancy between conditional distributions, which first leads to a static model averaging method, StaticMA, assigning fixed weights to different candidates. In addition, we develop MoEMA (mixture-of-experts model averaging), an input-adaptive method that parameterizes covariate-dependent weights through a softmax neural-network gate. We establish in-sample and out-of-sample asymptotic optimality for the proposed methods, together with consistency of the estimated adaptive weight function under regularity conditions. The framework applies directly to Euclidean responses and extends to unstructured data by combining our formulation with fixed representation maps. Across a broad set of simulations and real-data studies spanning tabular, image, and text modalities, MoEMA generally improves over competing baselines, demonstrating the effectiveness of our proposed methods.
Shijin Gong, Baihua He, Xinyu Zhang
Jul 2, 2026cs.LG

Ask the Right Comparison:Bias-Aware Bayesian Active Top-kk Ranking with LLM Judges

Large language models (LLMs) are increasingly used as cheap, scalable judges that compare candidate outputs pairwise -- to rank responses, select models, or triage papers. Yet LLM judges are both noisy and systematically biased: they favor verbose or well-formatted answers and exhibit position effects, so simply aggregating their votes recovers a ranking of presentation, not of true quality. We study the practical goal of identifying the \topk{} items under a fixed comparison budget, and make two contributions. First, we cast judging as Bayesian inference over latent quality with explicit, judge-specific bias covariates (verbosity, position), regularized by a shrinkage prior so that the data decide which biases a given judge actually exhibits. Second, we introduce a \topk-aware active acquisition rule that chooses the next comparison to maximally reduce uncertainty about \topk{} \emph{membership}, rather than about the full ranking. On a controlled benchmark with known ground-truth quality, judged by sixteen real LLMs spanning open and proprietary families (Llama, Qwen, Phi-4, GPT-4o-mini/5.1/5.5, Gemini, DeepSeek, and Claude Haiku/Sonnet/Opus), naive aggregation plateaus at a wrong \topk{} on biased judges regardless of budget, while our bias-aware model recovers it; \topk-aware acquisition reaches this ceiling with far fewer comparisons than round-robin or a global-uncertainty (D-optimal) rule. Bias is real but heterogeneous and capability-dependent: cheap and mid-tier judges carry a strong verbosity bias that our model corrects (lifting recall from \sim$$0.5--0.60.6 to 0.840.84--1.01.0), whereas the frontier judges we tested show little bias and already rank accurately, so bias-aware modeling changes little there.
Jian Xu, Delu Zeng, John Paisley +1
Jul 2, 2026cs.LG

Evaluating Time Series Foundation Models for Electricity Price Forecasting: Contamination Risk, Distributional Shifts, and Covariate Dependence

Time series foundation models (TSFMs) have shown strong zero-shot forecasting performance, but their generalization in covariate-driven, non-stationary settings is underexplored. Electricity price forecasting (EPF) presents a challenging testbed due to complex temporal dependencies, distributional shifts, and strong reliance on structural and contextual information. We propose a two-dataset-benchmarking framework for EPF to mitigate contamination risk and enable fair evaluation of TSFMs. We examine key aspects of EPF including point and probabilistic forecasting performance, tail behavior, price spikes, and comparisons against domain-specific methods. We find that TSFMs are highly competitive and often outperform general-purpose baselines. Yet, their performance depends critically on covariate support, and they do not consistently surpass domain-specific methods tailored to EPF. Interestingly, simple ensembles of TSFMs and domain-specific methods appear to have significant potential, suggesting that the two approaches capture complementary predictive information.
Zhenghua Pan, Ahmed Aziz Ezzat
Jun 30, 2026cs.LG

A Filtered Mixture-of-Generators for Fully Synthetic Survival Training

Survival analysis models time-to-event data, but in clinical settings training data are costly and scarce: events accrue over years of follow-up, cohorts are small, and privacy regulations restrict sharing across institutions. Tabular generative models promise augmentation and privacy-preserving cohort sharing, yet are themselves data-hungry -- on the small cohorts typical of survival analysis, a single generator rarely characterizes the population well enough for downstream models trained on its output to match real-data performance. FoGS (Filtered Mixture-of-Generators for Survival analysis) reframes synthetic-data construction as sample selection rather than generation. A candidate pool is drawn from four architecturally distinct tabular generators, and each sample is scored by an ensemble of seven survival models trained on real data, using proper scoring rules as a per-sample plausibility proxy. A two-level pipeline optimizes, in its outer loop, a selection policy -- generator quotas, scorer weights, a random complement, and stratified balancing on event time and censoring -- against held-out downstream performance, while an inner loop tunes the downstream model (XGBoost-Cox). On 16 public datasets under train-on-synthetic, test-on-real (C-index and IBS, 00--100100 scale), FoGS yields mean improvements of +2.17+2.17 in C-index and +0.67+0.67 in IBS, improving both metrics on 9 of 16 datasets and at least one on 13 (one-sided Wilcoxon p=0.039p=0.039 and p=0.035p=0.035). It matches or exceeds real-data training on most cohorts, with no significant change in nearest-neighbour privacy margin relative to unfiltered sampling. Sample filtering over a heterogeneous generator pool is thus a viable substitute for real-data training in privacy-restricted clinical settings.
Niccolò Maria Rizzi, Eugenio Lomurno, Alberto Archetti +1
Jun 30, 2026stat.AP

Spatio-Temporal Gaussian Process for Building Terrain-Incorporating Wind Power Curves

Accurate modeling of wind turbine power curves is crucial for optimal wind farm operation. Nearly all existing power curve models focus on temporal variables such as wind speed and temperature while overlooking the influence of terrain covariates, which governs inflow wind conditions and thus also affects wind power production. This paper proposes a nonparametric spatio-temporal Gaussian process model that integrates temporal environmental covariates with spatial terrain features. The model falls in the category of spatial-temporal Gaussian process models with data on a grid. The challenge to be addressed is that the spatio-temporal modeling require certain temporal alignment among the data, a property that the wind farm data does not have. Our solution strategy is to construct a shared representative temporal covariate set which not only aligns the temporal inputs but also has a size an order of magnitude smaller than the original data size. With this transformation, our resulting model is able to employ a separable kernel structure that captures both spatial and temporal dependencies. Empirical analysis on a real wind farm dataset shows that our method improves predictive accuracy over existing baselines and can be used to quantify the various impact of the terrain characteristics on turbine performance.
Ahmadreza Chokhachian, V. Roshan Joseph, Yu Ding
Jun 29, 2026cs.LG

Accelerometry-Derived Digital Biomarkers for Cardiometabolic Risk: A Population-Representative Tabular Benchmark with Uncertainty Quantification

Structured tabular data dominates clinical medicine, yet existing benchmarks fail to reflect real-world properties like complex survey sampling, demographic oversampling, and subgroup fairness. We introduce the NHANES Accelerometry Cardiometabolic Benchmark, derived from NHANES 2003-2006, comprising 1,381 adults with hip-worn accelerometry, fasting laboratory biomarkers, dietary intake, and anthropometrics. We evaluate three tabular learning methods -- ridge regression, XGBoost, and the foundation model TabPFN v2 -- to predict glycated haemoglobin (HbA1c), fasting triglycerides, and C-reactive protein (CRP) from activity phenotypes and lifestyle covariates. TabPFN v2 achieves the best overall performance (HbA1c R^2=0.156, CRP R^2=0.383), while triglycerides remain largely unpredictable (R^2 < 0.05), consistent with known genetic dominance. We apply split conformal prediction to generate distribution-free 90% prediction intervals and evaluate demographic coverage equity across sex and race/ethnicity subgroups. Marginal coverage aligns with the 90% target for CRP and HbA1c but falls below for triglycerides. At the subgroup level, we observe localized undercoverage (e.g., HbA1c for Mexican American participants), illustrating the gap between marginal guarantees and the conditional coverage required for clinical fairness. Code and data are at https://github.com/felizzi/nhanes-accel-cardiometabolic-benchmark.
Federico Felizzi
Jun 22, 2026stat.ME

Target-Aware Linear Regression Under Distribution Shift

Distribution shift between training and deployment is a pervasive challenge for modern AI systems. In many cases, the target marginals of covariates and response are known or specified through population-level observations, boundary conditions, properties of simulator configurations, or alignment-time distributional constraints. Such knowledge may provide valuable side information for regression estimation. We study this problem in the multivariate linear regression setting with a stable conditional mean E[YX]E[Y\mid X] across source and target, and identify the hybrid-loss estimator, which jointly incorporates both target marginals, as a benchmark target-aware estimator. Its direct computation, however, requires solving a coupled nonlinear optimization that is expensive at scale. Our main contribution is to develop and evaluate two computationally tractable alternatives: a constrained moment-matching estimator and a two-stage estimator that augments ordinary least squares with a calibration step. For all three estimators, we derive and compare closed-form asymptotic mean squared errors, yielding conditions under which the tractable alternatives match or closely approximate the hybrid benchmark, and regimes in which they do not. Monte Carlo experiments across three controlled shift regimes validate the theoretical results, investigate the accuracy-runtime tradeoffs among the three estimators, and translate into guidance on estimator choice. In particular, the two-stage estimator nearly matches the hybrid benchmark in the high signal-to-noise regime at essentially no additional cost, providing theoretical grounding for empirical observations in nonlinear settings.
Zhewen Hou, Tian Zheng
Jun 22, 2026cs.LG

Statistical Matching via Schrödinger Bridge beyond Conditional Independence

Statistical matching combines partially overlapping datasets that share covariates XX but observe the target YY and auxiliary variables ZZ separately. Classical approaches typically invoke the conditional independence assumption (CIA), which makes the problem identifiable but fundamentally implies that the imported auxiliary variable provides no additional predictive power for YY once XX is known. To capture this latent YY--ZZ dependence, we propose a novel dependency-aware Schrödinger bridge for predictive statistical matching. Our approach couples the two separated databases by tilting the conservative CIA baseline with a transportation-based compatibility cost, recovering an informative joint distribution. The resulting statistical learning framework yields full probabilistic posterior rules for bidirectional imputation. Theoretically, we establish a sufficient condition under which the learned bridge strictly improves over the CIA baseline, alongside an exact joint recovery guarantee in the Gaussian setting under an appropriate cost. Across synthetic benchmarks and real-world datasets (CelebA and Adult), we demonstrate that our dependency-aware completion consistently improves downstream predictive utility, proving especially beneficial in settings like data recoding where the underlying population exhibits strong YY--ZZ dependence.
Eunho Koo, Tongseok Lim, Jinwon Sohn
Jun 20, 2026stat.ML

Convergence Analysis of Nyström Subsampling in Covariate Shift Adaptation for Misspecified case

This paper investigates convergence properties of regularized Nyström subsampling applied to the unsupervised domain adaptation problem under covariate shift. We focus on the low-smoothness (misspecified) case where the target function lies outside the reproducing kernel Hilbert space. By combining Tikhonov regularization with Nyström projection onto a subsampled subspace, we obtain upper bounds on the excess risk that hold with high probability and are expressed in terms of the source condition, the effective dimension, and the sample sizes. We further extend the analysis to the setting where the Radon-Nikodym derivative between the target and source marginal distributions is unknown and must be approximated, and we identify the minimal additional sample sizes required to maintain the same convergence rate as in the oracle case.
Hanna Myleiko, Sergei Solodky, Vasyl Semenov
Jun 18, 2026cs.CV

PROTON: Prototype-Based Test-Time Online OOD Detection for Medical VLMs

Medical vision-language models (VLMs) enable zero-shot clinical image classification, yet reliably detecting out-of-distribution (OOD) inputs at deployment remains an open problem. No static scoring method works across all shift types: Maximum Concept Matching (MCM) on FLAIR achieves 76.4% AUROC for far-OOD but only 42.4% for covariate shifts such as ultra-wide-field fundus images, effectively random. We trace this to a structural mismatch: covariate-shifted inputs are indistinguishable from in-distribution samples in softmax space, yet occupy distinct regions in the VLM embedding space. To exploit this untapped signal, we propose PROTON (PROtotype-based Test-time ONline OOD detection), a lightweight post-hoc module that maintains an online prototype bank from high-confidence test predictions and adaptively fuses prototype distance with MCM scoring via stream-level variance statistics, requiring no model modification, training data, or prompt engineering. On the ophthalmology benchmark FLAIR + FIVES, PROTON improves MCM by +23.9 AUROC on covariate shift, +8.8 on semantic shift, and +8.1 on far-OOD, making it the only zero-shot method to improve all three without hierarchical prompts or labeled data. Code is available at https://github.com/GenMI-Lab/PROTON, and the project page is available at https://genmi-lab.github.io/PROTON.
Abhijit Das, Nichula Wasalathilaka, Yifan Lu +4
Jun 15, 2026cs.LG

Multi-Modal Spatio-Temporal Graph Neural Network with Mixture of Experts for Soil Organic Carbon Prediction

Top-soil organic carbon (SOC) prediction is fundamental to agricultural sustainability, land use policy and fertilization planning. Existing approaches face two limitations: they pair hand-crafted covariates with classical ML or single-modal deep models that miss rich spectral and temporal information, and grid-based architectures ignore the irregular spatial structure of field measurements. We introduce SpTGNN, a multi-modal spatio-temporal graph neural network addressing both. SpTGNN represents soil measurements as nodes in a heterogeneous graph with three edge types (spatial proximity, spectral similarity, elevation), and applies relational graph attention to learn separate patterns per relation. A fine-tuned TerraMind encoder extracts node features from Sentinel-2, Sentinel-1 and DEM signals, combined with per-sample environmental covariates and learned positional and temporal embeddings. A sparse Mixture-of-Experts module fuses the four streams via top-kk routing. Uncertainty is captured by pairing heteroscedastic regression (aleatoric) with deep ensembles (epistemic), and a Moran's II penalty regularizes spatial autocorrelation. We evaluate on a global SOC corpus split into three regional instances (\sim49k samples globally, Africa \sim26k, Europe \sim14k). Our 5-member deep ensemble reports R2=0.762R^2=0.762, RMSE =3.51±0.48=3.51\pm0.48 g/kg and MAPE =22.9%=22.9\% on the Africa test split, improving over a tabular XGBoost baseline; the best single checkpoint reaches validation R2=0.864R^2=0.864. Ablations confirm the heterogeneous graph, MoE fusion and fine-tuned backbone each contribute substantively, and the ensemble UQ stack achieves post-calibration ECE of 0.0310.031 (hybrid) and 0.0260.026 (ββ-NLL). To our knowledge, this is the first framework to unify foundation-model feature extraction, heterogeneous graph attention and decomposed uncertainty quantification for SOC estimation.
Daniele Mos, Felipe Drummond, Anton Bossenbroek +1
Jun 12, 2026stat.ML

Beyond the Training Distribution: Evaluating Predictions Under Distribution Shift and Selection Bias

Understanding how a prediction model will perform in a new environment before deployment is essential to preventing harm when algorithms inform decision-making. Two common sources of model performance degradation are (i) covariate shift, where the target covariate distribution differs from the source, and (ii) selective labels, where the observability of outcomes depends on historical decisions. We study pre-deployment model evaluation under the joint presence of covariate shift and labeling of outcomes selectively based on observed features. In particular, we present a double machine learning procedure for estimating the target risk of an arbitrary black-box prediction model under a general loss function. We show identification of this estimand under standard assumptions and derive a bias-corrected estimator based on the influence function of the target risk. Finally, we evaluate our estimator through experiments using the eICU electronic health records database, showing that it tracks the true target risk more accurately than methods that address either selective labels or covariate shift alone, as well as baselines that combine standard plug-in approaches.
Annie Ulichney, Amanda Coston
Jun 12, 2026stat.ML

Gradient boosting for extremes: sampling theory and application to insurance

We develop a statistical learning theory for gradient boosting applied to the estimation of covariate-dependent Generalized Pareto (GP) distributions in the context of Peaks-over-Threshold modeling. After an orthogonal reparametrization of the GP likelihood that diagonalizes its Fisher information matrix, we cast the estimation problem within the Empirical Risk Minimization (ERM) framework and derive non-asymptotic error bounds for the boosting estimator. Our analysis accounts for three distinct sources of error in the process: statistical fluctuations, the approximation bias inherent to the asymptotic nature of the GP model-controlled under second-order regular variation-and the approximation error associated with the finite number of boosting iterates, making explicit the resulting bias-variance trade-off. We illustrate the practical benefits of the reparametrization through simulations, showing that it significantly reduces gradient correlation during training and improves convergence stability. The methodology is applied to a medical malpractice insurance dataset from the Texas Department of Insurance, comprising over 18 000 closed claims. The gradient boosting approach yields a good fit for the tail of settlement cost distributions and reveals that the number of days to settlement is the dominant predictor of tail heaviness, consistent with earlier findings in the reserving literature.
Stéphane Lhaut, Olivier Lopez
Jun 9, 2026stat.ML

Generalized Conformal Predictive Systems Under Distributional Shifts

Conformal predictive systems (CPS) output calibrated bands of CDFs under exchangeability. We extend generalized CPS to non-exchangeable settings by encoding distributional shifts through observation-specific permutation weights. This yields shift-aware predictive systems that remain valid whenever the test point is, conditionally on the unordered sample, a weighted draw from the observed atoms. Since such weights are typically estimated, we introduce weight-uncertainty boxes and construct robust CPS envelopes with finite-sample or asymptotic confidence guarantees. We derive efficient computation for conformity-measure CPS, conformal binning, and conformal isotonic distributional regression. Experiments under covariate shift and feedback-driven biomolecular design show calibrated predictive bands that widen under stronger shifts and tighten as sample size increases.
Jef Jonkers, Johanna Ziegel
Jun 8, 2026cs.LG

From Hazard Functions to Language Space: Cox-Supervised Distillation of Survival Risk into a Large Language Model

We investigate whether information about time-to-event risk estimated by a Cox proportional hazards model can be transferred into a generative large language model. We propose a text-based survival modelling pipeline in which structured clinical covariates are converted into text prompts and a Qwen-based large language model is fine-tuned to generate patient-specific survival risk using Cox model predictions as a training target. Across GBSG2, ACTG320, and WHAS500, the model achieves competitive held-out discrimination and calibration despite being trained as a text-generation task rather than with a conventional survival-analysis loss. We further analyse the geometry of the model's hidden states, where t-SNE visualisations reveal smooth risk gradients in latent space, suggesting that the model represents survival risk as a continuous structure rather than isolated risk categories. Together, these findings suggest that large language models can internalise survival-risk structure while supporting calibrated prediction, providing a route towards time-to-event reasoning in language models.
Nicholas I-Hsien Kuo, Blanca Gallego, Louisa Jorm