Medical Image Benchmarks

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20 papers in the last four weeks, up 25% on the four weeks before. 0.2% of all new papers.

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Latest papers 237

Jun 5, 2026cs.CV

Mitosis Detection in the Wild: Multi-Tumor and Context-Aware Generalization in the MIDOG 2025 Challenge

Automated mitosis detection is a well-established task in computational pathology. While previous benchmarks focused on scanner-induced domain shift, clinical "real-world" application requires models to be robust across the vast variance to be expected in the histological landscape. The MItosis DOmain Generalization (MIDOG) 2025 challenge was designed to evaluate algorithmic performance across unprecedented biological and contextual diversity. We curated a test dataset of 365 cases, encompassing 12 distinct human, canine and feline tumor types, digitized across multiple scanning platforms. Moving beyond hand-selected hotspots, the challenge required detection also in random tissue areas (representative of the whole slide detection situation) and challenging areas (areas rich in hard negatives). In the second track, we introduced the classification of atypical mitotic figures (AMFs). There were 18 teams submitting to the detection track, with F1 scores ranging up to 0.740. In the AMF detection track, we had 21 submissions with balanced accuracy values up to 0.908. Our analysis reveals that while most models perform reliably in traditional hotspots, significant performance degradation occurs in challenging ROIs, where false positive rates tripled. Furthermore, performance varied significantly across the 12 tumor types, highlighting "blind spots" in current state-of-the-art architectures when encountering rare or highly pleomorphic malignancies. Moreover, we evaluated the effectiveness of ensembling and found a mean increases of 1.5 and 1.3 percentage points in F1 score and balanced accuracy, respectively. In contrast, TTA showed no relevant improvement. MIDOG 2025 demonstrates that "in the wild" mitosis detection remains a significant hurdle. The transition from hotspot-only evaluation to a multi-contextual framework provides a more realistic proxy for clinical reliability.

Marc Aubreville, Jonas Ammeling, Sweta Banerjee +64

Computational Pathology Domain Generalization Medical Image Anomaly Detection Oncology Medical Image Benchmarks Whole-Slide Image Analysis

Jun 5, 2026eess.IV

DaX: Learning General Pathology Representations Across Scales

Computational pathology requires visual representations that transfer across diverse clinical endpoints and remain robust to variation in magnification, staining, scanner type, slide preparation, and input resolution. We present DaX, a pathology vision foundation model that adapts DINOv3-style self-supervised learning to whole-slide histopathology. DaX is initialized from natural-image DINOv3 weights and incorporates continuous magnification training, cross-scale tissue views, orientation-agnostic and acquisition-robust augmentation, multi-input-size training, and Gram-anchored dense consistency. These designs aim to connect local cellular morphology with global tissue architecture while stabilizing dense token-level representations across input scales. We further construct a WSI-level benchmark comprising 161 clinically meaningful tasks from 44 public datasets, covering 28,182 patients and 34,394 slides across four clinical domains and nine task categories. All models are evaluated under a fixed patient-level cross-validation protocol with fold-level statistical ranking, enabling reproducible comparisons that are less sensitive to split-dependent variation. Across this benchmark, DaX achieves the highest mean performance across tasks and consistently strong task-level ranking scores, with gains spanning diagnostic pathology, biomarker and molecular profiling, tissue/specimen context, and risk, response, and prognosis. These results support DaX as a transferable visual encoder for computational pathology and provide a standardized evaluation framework for future pathology foundation models. Project page: https://alibaba-damo-academy.github.io/DaX/benchboard/.

Bokai Zhao, Yiyang Zhang, Long Bai +3

DAMO Academy, Alibaba Group · Institute of Automation, Chinese Academy of Sciences · Hupan Lab

Pathology Foundation Models Medical Image Representation Learning Medical Image Benchmarks Whole-Slide Image Analysis Self-Supervised Visual Representation Learning

Jun 4, 2026cs.CV

MMBU: A Massive Multi-modal Biomedical Understanding Benchmark to Probe the Perception Capabilities of Vision-Language Models

Vision and language models (VLMs) hold immense promise to transform biomedical imaging workflows, from detecting lesions in chest X-rays to profiling cellular features in microscopy. Realizing this potential, however, requires robust and fine-grained visual perception. Models need to correctly interpret subtle features in images, and they must do so across diverse biomedical modalities, scales, and contexts. Nevertheless, current benchmarks remain limited. To address these gaps, we introduce the Massive Multimodal Biomedical Understanding (MMBU) benchmark. It is the largest biomedical vision and language benchmark to date, covering 35 submodalities with rich structured metadata. It includes both open and closed versions of ungrounded classification, grounded classification, and object detection, enabling systematic evaluation of model performance across biological scales, clinical settings, and imaging modalities. Evaluating 15 open-weight and 2 frontier VLMs, we find that while medical adaptation provides measurable gains for some models, the high accuracy often reported on established benchmarks can mask deficiencies in visual perception and domain generalization.

Ryan D'Cunha, Alejandro Lozano, Xiaoxiao Sun +17

Stanford University, Stanford, CA, USA · Instituto Tecnológico de Monterrey, Mexico · Monash University, Melbourne, VIC, Australia +4

Medical Image Analysis Medical VLMs Multimodal Model Evaluation Medical Image Benchmarks

Jun 4, 2026cs.CV

A Vision-language Framework for Comparative Reasoning in Radiology

Medical imaging artificial intelligence has achieved strong performance in isolated image interpretation, but remains poorly aligned with radiological practice, where diagnosis and follow-up rely on comparison across prior studies and analogous reference cases. Here we formulate radiological comparison as an entity-aware cross-image reasoning problem and introduce a framework that supports both reference-case retrieval and temporal comparative interpretation. We construct MedReCo-DB, a large-scale comparative imaging resource derived from routine image-report pairs, comprising more than 690,000 images from over 160,000 patients across eight institutions, four countries and seven imaging modalities. Reports are decomposed into anatomical structures, abnormal findings and pathological conditions to provide supervision for entity-conditioned retrieval and comparative visual question answering. Using this resource, we develop MedReCo, an entity-aware visual encoder for controllable retrieval of clinically analogous cases, and MedReCo-VLM, a vision--language extension for generative interpretation of interval change. Across internal, external and cross-center evaluations, MedReCo achieved the highest Recall@1 in all 12 internal retrieval settings and improved external retrieval by a mean of 6.0 percentage points. In clinically confusable differential groups, it consistently outperformed the strongest baselines. MedReCo-VLM achieved the best performance across all comparative generation evaluations and improved longitudinal follow-up accuracy by 14.5-46.5 percentage points on chest radiographs and 13.0-27.9 percentage points on CT. These findings suggest that entity-aware comparative reasoning can be learned from routine clinical data at scale and may provide a more clinically aligned foundation for medical imaging AI.

Tengfei Zhang, Ziheng Zhao, Xiaoman Zhang +5

University of Science and Technology of China · 3Shanghai Artificial Intelligence Laboratory · School of Artificial Intelligence, Shanghai Jiao Tong University +3

Radiology VLMs Longitudinal Medical Image Analysis Medical Image Representation Learning Medical Image Benchmarks

Jun 3, 2026cs.CV

BreastGPT: A Multimodal Large Language Model for the Full Spectrum of Breast Cancer Clinical Routine

Breast cancer remains a leading cause of cancer-related mortality among women. Its clinical management requires multimodal reasoning across a clinical workflow that spans \textit{screening}, \textit{diagnosis} and \textit{treatment planning}, where each stage involves distinct imaging modalities, task objectives, and reasoning patterns. However, constrained by data scarcity and model versatility, existing medical MLLMs are typically evaluated on isolated modalities or narrow task families, limiting their ability to support workflow-level clinical reasoning. In this work, we first introduce \textbf{BreastStage}, a workflow-aligned breast imaging instruction corpus comprising 1.86M instruction-following pairs curated from 17 sub-datasets across 5 imaging modalities and 136 task templates. Its held-out split, \textbf{BreastStage-Bench}, provides a comprehensive benchmark for evaluating multimodal reasoning across the breast cancer care continuum. Building on this corpus, we propose \textbf{BreastGPT}, a unified MLLM equipped with a dual-branch visual encoder and concept-preserving token compression to bridge the scale gap between standard radiology and gigapixel pathology. On BreastStage-Bench, BreastGPT achieves 75.66% closed-ended accuracy and 89.92% open-ended score, outperforming both general-purpose and medical-specific MLLMs across clinical stages and task formats. These results suggest that workflow-aligned data and cross-scale visual modeling are critical for clinically grounded medical MLLMs. All data, code, and model checkpoints are released at https://yangyy-liu.github.io/BreastGPT.io.

Yang Liu, Jiajin Zhang, Danyang Tu +8

DAMO Academy, Alibaba Group · Zhejiang University · West China Hospital +1

Breast Cancer Medical Imaging Multimodal Reasoning Medical VLMs Mammography Oncology+1

Jun 2, 2026cs.CV

CoralBay: A Self-Supervised CT Foundation Model

Self-supervised learning has enabled large-scale pre-training on 2D natural images, producing general-purpose visual representations that transfer effectively across tasks. However, many medical imaging modalities, such as CT scans, are inherently three-dimensional and differ fundamentally from natural images in both structure and semantics. Volumetric modalities capture spatial continuity, organ anatomy, and intensity-based tissue properties (e.g., Hounsfield Units), which are not adequately modeled by 2D pre-training. To bridge this gap, we introduce CoralBay, a self-distillation framework that extends DINO by using a hierarchical 3D Swin backbone and applying self-distillation to concatenated multi-scale features, enabling data-efficient self-supervised learning of rich spatial representations that encode both global semantics and fine-grained local structure. As a result, CoralBay transfers effectively to a wide range of downstream radiological tasks, demonstrating strong and consistent performance across diverse anatomical targets. In addition, we contribute to the open-source \eva framework by introducing a public, reproducible 3D radiology leaderboard that unifies multiple datasets and establishes a standardized benchmark for evaluating volumetric representation learning methods.

Ioannis Gatopoulos, Nicolas Känzig, Sebastian Otálora +1

Medical Imaging Foundation Models 3D Representation Learning Self-Distillation Computed Tomography Medical Image Benchmarks Self-Supervised Visual Representation Learning

Jun 1, 2026cs.CV

Automated Report-Derived Oncology VQA Benchmark for Evaluating Vision-Language Models on 3D Medical Imaging

Evaluating vision-language models (VLMs) on medical images requires benchmarks that are clinically grounded, scalable, and controlled for evaluation confounds. Existing public benchmarks are limited in scale, manually annotated, or potentially leaked into VLM pretraining corpora. We present an automated agent-driven pipeline that generates multiple-choice VQA datasets directly from paired private radiology reports and 3D oncology imaging, producing two complementary question types: RADS-style questions deterministically derived from clinician-defined reporting schemas, and radiology report-derived questions generated by an LLM from radiologist findings and verified against the source report. Applied to four in-house cancer cohorts, the pipeline yields an instance-contamination-controlled benchmark without per-question human annotation. Zero-shot evaluation of six VLMs reveals no dominant model and substantial headroom across all cells. A blind ablation reveals that visual reliance is highly dataset-specific: liver Report-derived questions genuinely require the image, while Lung CT is essentially solvable without it - the leading closed model exceeds its sighted accuracy on Lung CT when blinded - indicating that even private clinical data does not guarantee a contamination-controlled read of visual capability. The pipeline is released as an open agent skill for in-house redeployment.

Bo Liu, Hanxue Gu, Xiangru Li +6

UCSF–UC Berkeley Joint Graduate Program in Bioengineering · Department of Radiology, UCSF · Department of Radiation Oncology, UCSF

VLM Evaluation Medical Imaging 3D Medical Imaging Medical VQA Oncology Medical Image Benchmarks

May 30, 2026cs.CV

A Systematic Benchmark of Intraoperative Ultrasound-to-MR Synthesis for Brain Tumour Surgery

Intraoperative ultrasound (ioUS) is a versatile, cost-effective modality in brain tumour surgery, but its interpretation is difficult: acquisition planes are non-standard, artefacts are modality-specific, and its appearance differs markedly from the preoperative MRI on which surgical-planning tools, segmentation models and the surgeon's experience rely. Synthesising MRI-like images from ioUS could let this MRI-based infrastructure be reused intraoperatively without an extra scan. Most prior work evaluates a single architecture in isolation; to our knowledge, no benchmark has spanned architectural paradigms, inference regimes and downstream-task endpoints under a common protocol. We address this gap on the public ReMIND data set (76 patients; 153 paired ioUS/T2w and 104 paired ioUS/FLAIR studies; 60/16 patient-level train/held-out split). Six generators (four GAN baselines: Pix2Pix, SwinPix2Pix, CycleGAN, CUT; the transformer-augmented ResViT; and the few-step diffusion model SynDiff) were each trained under four inference regimes (2D, 2.5D, 2D + 3D-refinement, full-3D) and two targets (T2w only; T2w + FLAIR multi-task), yielding 48 experiments. Image-fidelity metrics (SSIM, PSNR, MAE, LPIPS) were complemented by an nnU-Net v2 downstream segmentation evaluation (tumour and resection cavity) and by subgroup analyses by histological grade and reoperation. No architecture dominated every axis, and, critically, perceptual quality tracked downstream utility most closely (LPIPS, r=-0.66, p<0.001), whereas higher SSIM was associated with worse utility (r=-0.64, p<0.001); SynDiff-2.5D best preserved downstream segmentation (U_Dice=0.55). Perceptual and downstream-task metrics should therefore be reported alongside or in preference to global SSIM, and architecture choice conditioned on surgical phase, patient history and clinical objective.

Olga Esteban-Sinovas, Santiago Cepeda, Ignacio Arrese +1

Department of Neurosurgery, Neurovascular Unit Río Hortega University Hospital, Valladolid, Spain · Specialized Group in Biomedical Imaging and Computational Analysis (GEIBAC) Instituto de Investigación Biosanitaria de Valladolid (IBioVALL), Valladolid, Spain

Ultrasound Imaging Medical Image Synthesis Medical Image Benchmarks

May 30, 2026cs.CV

ASAP: Advancing Medical Volumetric Representation Learning with Anatomy-aware Semantically-adaptive Pre-training

Learning transferable and interpretable representations from medical volumetric scans remains challenging due to complex anatomical structures and weak, heterogeneous supervision provided by radiology reports. In this paper, we propose Anatomy-aware Semantically-Adaptive Pre-training (ASAP), a principled vision-language pre-training framework for fine-grained medical volumetric representation learning from large-scale chest CT scans and their corresponding radiology reports. ASAP integrates three key components: (1) an anatomy-aware knowledge injection module that incorporates organ-level structural priors via off-the-shelf segmentation tool to encourage anatomically coherent representations; (2) a semantically-adaptive selective alignment mechanism that dynamically associates sentence-level findings with localized volumetric regions; and (3) a semantically-adaptive fusion module for effective interaction between anatomically informed visual features and grounded textual cues under dual-modal masked modeling paradigm. Beyond methodological contributions, we establish a comprehensive benchmark for medical volumetric vision-language pre-training on chest CT, covering 15 datasets and 22 downstream tasks spanning abnormality classification, segmentation, disease prognosis prediction, report generation, vocabulary classification, cross-modal retrieval and visual question answering. This benchmark provides standardized evaluation protocols to systematically assess representation quality under diverse clinical settings and data regimes. Extensive experiments demonstrate that ASAP consistently achieves state-of-the-art performance across tasks and datasets, with particularly pronounced gains under limited supervision and distribution shift, validating its effectiveness in learning transferable and clinically meaningful volumetric representations.

Rongsheng Wang, Fenghe Tang, Zihang Jiang +10

School of Biomedical Engineering, Division of Life Sciences and Medicine, University of Science and Technology of China (USTC), Hefei, Anhui, China 230026 · Medical Imaging, Robotics, Analytic Computing & Learning (MIRACLE) Lab, YRD-RIGHT, USTC Suzhou Institute for Advanced Research, Suzhou, Jiangsu, China 215123 · Jiangsu Provincial Key Laboratory of Multimodal Digital Twin Technology, Suzhou, Jiangsu, China 215123 +5

Medical VLMs Medical Image Grounding Medical Image Representation Learning Medical Image Benchmarks

May 29, 2026cs.LG

Beyond Accuracy: Evaluating Efficiency, Robustness and Explainability in Deep Learning for Malaria Diagnosis

Malaria remains a leading cause of mortality in sub-Saharan Africa, where scarce diagnostic infrastructure makes timely, accurate diagnosis particularly challenging. While deep learning offers a compelling path toward automated malaria screening, clinical adoption is hindered by computational cost and opacity in decision-making. This work benchmarks four deep learning models spanning a wide range of designed design architectures and model capacities on the NLM-Malaria dataset, jointly evaluating predictive performance, robustness, and post-hoc explainability. We find that lightweight, efficient-by-design models match their heavier counterparts in predictive performance, and the Friedman test confirms no statistically significant performance differences. CAM-based XAI methods consistently localize diagnostically relevant regions, while fine-grained attribution methods produce less targeted explanations, particularly with heavier backbones. Robustness evaluation under three types of image corruption further reveals that model confidence degrades faster than accuracy, providing a practical signal for human review. However, no XAI method is robust to corruption, with explanation reliability degrading at noise levels plausible in clinical practice, even when predictions remain accurate. These findings support the deployment of lightweight architectures for malaria diagnosis in resource-constrained settings, while highlighting the vulnerability of post-hoc explanations as an important consideration for responsible clinical deployment.

Olivier Kanamugire, Kerol Djoumessi

African Institute for Mathematical Sciences, Kigali, Rwanda · Hertie Institute for AI in Brain Health, University of Tübingen, Germany

Efficient Neural Network Inference Image Corruption Robustness Medical Diagnosis Medical Image Classification Explainability Evaluation Medical Image Benchmarks

May 28, 2026cs.CV

Fairness Beyond Demographics: Optimizing Performance Across Appearance-Based Hidden Cohorts in Medical Imaging

Medical image analysis models can exhibit performance disparities across patient subgroups, threatening clinical safety and fairness. Existing methods typically address this issue by optimizing accuracy and fairness metrics for visible demographic attributes (e.g., sex or age) considered in isolation. This strategy not only overlooks potentially more informative latent stratifications, which may reveal deeper sources of model error and inequity, but also fails to scale when multiple demographic attributes are considered simultaneously due to the resulting sparsity of training data within each subgroup. We deal with these issues by introducing the label-free hidden-cohort fairness (LHCF) training paradigm that instead of maximizing fairness over visible demographic attributes, it optimizes fairness across latent subpopulations discovered from image appearance. By clustering images into K appearance-based cohorts and applying fairness optimization over them, LHCF uncovers underlying sources of model error and avoids the combinatorial sparsity of multi-demographic attributes, reducing disparities across both single and multiple demographic attributes. We demonstrate on our proposed fairness benchmark, HIDFairBench, that LHCF provides state-of-the-art fairness results on single and multiple demographic attributes, despite never using demographic labels for training. Our results position hidden-cohort fairness as a practical, scalable, and robust alternative to demographic-based fairness optimization for trustworthy medical image analysis.

Milad Masroor, Cuong Nguyen, Kevin Wells +1

Centre for Vision, Speech and Signal Processing, University of Surrey, Guildford, UK

Medical Image Analysis Algorithmic Fairness Group Fairness Medical Image Benchmarks

May 28, 2026cs.CV

CardioLens: Revealing the Clinical Reality Gap of MLLMs via Multi-Sequence Cardiac MRI Evaluations

Multimodal Large Language Models (MLLMs) have shown strong performance on public medical benchmarks, yet existing evaluations often remain weak proxies for clinical use, relying on isolated inputs and simplified recognition-style tasks. We introduce CardioLens, a leakage-resistant evaluation testbed for multi-sequence Cardiovascular Magnetic Resonance (CMR), constructed from private hospital archives through a rigorous report-to-QA construction and verification pipeline. CardioLens contains 473,896 slices and 13,494 verified QA pairs across 4D Cine, LGE, perfusion, and T2-weighted imaging, and evaluates three stages of CMR interpretation: image understanding, report generation, and disease diagnosis. Across 24 state-of-the-art MLLMs, CardioLens reveals a substantial clinical reality gap: models perform poorly overall, with performance degrading along the real CMR workflow. Confusion analysis further shows a category-collapse failure mode, where models default to frequent abnormal categories rather than distinguishing clinically distinct findings. To rule out MLLM-compatible input construction as the primary cause, we compare random, clinically motivated, and data-driven slice selection protocols under different slice budgets; performance changes only marginally, typically by about 1%. Explicit reasoning prompts also fail to rescue performance, often making models more conservative rather than improving visual evidence use. These results show that current MLLMs remain far from reliable CMR interpretation, where clinical decisions require integrating distributed evidence across sequences, views, and temporal phases. CardioLens provides a clinically grounded testbed for developing next-generation MLLMs toward real-world clinical deployment.

Zixian Su, Hongkai Zhang, Fan Gao +12

Beijing Academy of Artificial Intelligence · Beijing Anzhen Hospital · Beihang University +1

Magnetic Resonance Imaging Medical VLMs Multimodal Model Evaluation Medical Image Benchmarks Cardiac MRI

May 28, 2026cs.CV

Pocket-Dentist: On-Device Dental Image Understanding via Efficient Multimodal Large Language Models

Evaluations of dental vision-language models remain fragmented across datasets, task definitions and metrics, and often ignore their computational cost. This limits their widespread deployment for dental screening outside specialist centres, where timely inference, limited hardware, and local handling of patient images are vital for practical, privacy-preserving clinical prescreening. Here we present Pocket-Dentist, an efficiency-aware benchmark for dental multimodal question answering that brings together three datasets spanning approximately 1,159 patients from BRAR and MetaDent, five task types and seven metrics. Across 14 typical VLMs, our results reveal an interesting observation: compact VLMs, such as 2B-parameter models, become competitive with much larger VLMs on most metrics after lightweight adaptation while requiring substantially lower computational costs in dental image understanding. Deployed locally on an iPhone 17 Pro, our finetuned compact VLM Pocket-Dentist-2B processed each sample in 4.31 s, reducing latency by 4.9x and memory use by 2.3x compared with a 7B baseline. Our project page is available at https://2026-icml.github.io/pocket-dentist-icml.

Kai Bian, Xucheng Guo, Bin Chen +4

The University of Auckland, New Zealand · Shandong University, China · The University of Melbourne, Australia

Medical Imaging Efficient VLM Inference Medical VQA Medical VLMs Medical Image Benchmarks On-Device Inference

May 27, 2026cs.CV

MeniOmni: A Structured Multimodal Benchmark for Holistic Meniscus Injury Assessment

Clinical diagnosis of meniscus injuries requires radiologists to integrate volumetric MRI evidence with patient context (e.g., sex, age, BMI) and to produce structured diagnostic reports. Existing knee MRI benchmarks are typically unimodal and rely on coarse labels, limiting their ability to evaluate holistic clinical reasoning. We introduce MeniOmni, a structured multimodal benchmark for meniscus injury assessment, consisting of 746 multi-center MRI studies with tri-planar volumetric inputs, Clinical Priors, and expert-annotated clinical text. MeniOmni supports two tasks: (1) fine-grained Stoller severity grading and (2) diagnostic report generation. We further propose risk-aware ordinal evaluation and a semantic consistency metric (Meni-Score) to better reflect clinical relevance. Baseline experiments show that incorporating Clinical Priors improves grading performance and reduces severe errors, highlighting the value of multimodal context for safer assessment. Code and data are available at https://github.com/ShuruiXu/MeniOmni.

Shurui Xu, Siqi Yang, Weiping Ding +4

School of Electronics, Electrical Engineering and Computer Science, Queen’s University Belfast, Belfast, UK · Radiology Department, Affiliated Nantong Clinical College of Nantong University, Nantong First People’s Hospital, School of Clinical Medicine, Nantong University, Nantong, Jiangsu, China · School of Artificial Intelligence and Computer Science, Nantong University, Nantong, China +5

Radiology Report Generation Medical Image Benchmarks Multimodal Learning

May 27, 2026eess.IV

Benchmarking Ultrasound Foundation Models for Fetal Plane Classification

Ultrasound is widely used in obstetric care due to its safety, accessibility, and real-time imaging. However, interpretation remains operator-dependent and susceptible to noise and artifacts. Deep learning models have shown strong performance to solve these problem, but they typically require large annotated datasets that are difficult to obtain in clinical ultrasound. Foundation models (FMs) offer an alternative, using a large number of ultrasound images to learn transferable representations that can generalize with limited labeled data. This work presents a comprehensive benchmark of ultrasound-specific FMs for fetal plane classification. We evaluated four ultrasound FMs (USFM, MOFO, UltraSAM, FetalCLIP) against two CNN baselines (ResNet50, EfficientNet-V2) and a ViT (DINOv3) pretrained on natural images. We trained all models under two complementary settings: full fine-tuning and linear probing with a frozen encoder. All models were trained using 5-fold patient-level cross-validation on a Spanish fetal ultrasound dataset and tested on both in-domain data and an external African cohort to assess cross-population generalization. We found that FetalCLIP achieved the best results in the linear probing setting (F1 = 0.9261 for in-domain, F1 = 0.9731 for out-of-domain), while USFM performed best in the full fine-tuning setting (F1 = 0.9476 for in-domain, F1 = 0.9515 for out-of-domain). MOFO and UltraSAM degraded most in both settings, underperforming natural image pretrained models in some cases. These findings highlight how the choice of pretrained model strongly affects fetal plane classification performance, since different pretraining objectives lead to different levels of transferability.

Leya Barrientos, Yuexi Du, Nicha C. Dvornek

Radiology & Biomedical Imaging, Yale School of Medicine, USA · Department of Biomedical Engineering, Yale University, USA

Medical Imaging Foundation Models Medical Image Classification Ultrasound Imaging Medical Image Benchmarks

May 26, 2026cs.CV

Cesarean Scar Defect Segmentation in Transvaginal Ultrasound Images: a Dataset and Benchmark

Cesarean Scar Defect (CSD) is one of the most prevalent complications following cesarean delivery. Transvaginal ultrasonography is widely used for primary CSD screening. Accurate determination of CSD outline and dimensions is crucial for treatment. However, CSDs are frequently overlooked by sonographers due to small size and irregular morphology, suboptimal image quality, and limited clinical awareness in resource-constrained settings. Despite artificial intelligence advances in medical imaging, no public dataset exists for transvaginal ultrasound CSD segmentation. To address this gap, we present a comprehensive CSD dataset comprising 1,111 images and 16 videos, yielding 501 positive samples with confirmed CSD and precise pixel-level manual annotations. Annotations are performed following standardized clinical guidelines through collaboration between experienced sonographers and trained PhD students. This work provides high-quality benchmark resources for advancing medical image segmentation algorithms and promoting clinical innovation. Ultimately, improved CSD diagnosis and subsequent treatment strategies can enhance the quality of life in women of reproductive age, representing significant value for both medical research and clinical practice.

Yuan Tian, Yue Li, Wei Xia +10

Department of Obstetrics and Gynecology, International Peace Maternity and Child Health Hospital affiliated to Shanghai Jiao Tong University School of Medicine, 910 Hengshan Road, Xuhui District, 200030, Shanghai, China. · School of Computer Science, University of Nottingham Ningbo China, 199 Taikang East Road, Ningbo, 315100, Zhejiang, China. · School of Computer Science, University of Nottingham, University Park, Nottingham, NG7 2RD, UK. +4

Ultrasound Image Segmentation Ultrasound Imaging Medical Image Segmentation Medical Image Benchmarks

May 25, 2026cs.CV

Benchmarking Convolutional, Transformer, Hybrid, and Vision Language Models for Multi Disease Retinal Screening

Modern deep learning offers powerful tools for automated retinal screening, but it remains unclear how different visual model families compare in realistic multi-disease settings and under domain shift. In this work, we benchmark twelve architectures across four model families: convolutional neural networks, vision transformers, hybrid CNN-transformer backbones, and vision-language models, using the Retinal Fundus Multi-disease Image Dataset (RFMiD). We evaluate two tasks: binary screening for any retinal disease and multi-label classification across 28 disease classes. Using standardized training, calibration, and evaluation protocols, we report AUC, F1, precision, recall, and sensitivity at a clinically relevant operating point with specificity near 80%. On RFMiD, all architectures perform well on binary screening, with AUC above 84%, but attention-based models perform best. SwinTiny and the hybrid CoAtNet0 and MaxViTTiny models achieve the strongest binary screening results and improve macro and micro F1 in the multi-label setting. Vision-language models, including CLIP ViT-B/16 and SigLIP-Base384, are competitive with CNN baselines but do not surpass the best transformer and hybrid backbones. In external validation on Messidor-2 for referable diabetic retinopathy, AUC ranges from 66.8% to 84.7%, with hybrid and transformer models again showing strong performance. These results provide a reproducible reference for model selection in multi-disease retinal screening and guide future automated screening tools for clinical deployment.

Durjoy Dey, Aymane Ajbar, Yuhong Yan

Department of Computer Science and Software Engineering Concordia University Montreal, QC, Canada · Ebovir Biotechnologie Inc. Montreal, QC, Canada

Hybrid CNN-Transformer Architectures Vision Transformer Medical Diagnosis Medical Image Classification Medical VLMs Medical Image Benchmarks

May 25, 2026cs.CV

Benchmarking Pathology Foundation Models for Spatial Domain Understanding

Pathology foundation models (PFMs) have emerged as a core approach for learning transferable representations from whole slide images (WSIs), and they are typically benchmarked through downstream clinical endpoints. While such task level evaluations are indispensable, they offer limited insight into what the representations themselves encode, particularly whether PFM embeddings can distinguish meaningful tissue regions and capture their spatial relationships. We present SpaPath-Bench, a representation level benchmark designed to diagnose spatial representation capability in PFMs. SpaPath-Bench formulates spatial domain identification (SDI) on paired whole slide image and spatial transcriptomics (ST) data as a diagnostic task. It curates 42 public paired WSI and ST slides, enables large scale evaluation across 19 encoders and seven SDI methods, and measures partition quality using three complementary criteria: unsupervised spatial coherence, transcriptomics referenced agreement, and expert referenced agreement. Across 83K runs, SpaPath-Bench reveals that different pretraining paradigms capture distinct aspects of tissue spatial architecture, and it provides practical guidance for building the next generation of spatially aware computational pathology models. Code and data pipelines are publicly available at https://bokai-zhao.github.io/SpaPath-benchboard/.

Bokai Zhao, Yiyang Zhang, Yuanchi Zhu +6

School of Artificial Intelligence, University of Chinese Academy of Sciences. · Brainnetome Center, Institute of Automation, Chinese Academy of Sciences. · Beijing Key Laboratory of Brainnetome and Brain-Computer Interface, Institute of Automation, Chinese Academy of Sciences. +2

Pathology Foundation Models Medical Image Benchmarks Whole-Slide Image Analysis

May 25, 2026eess.IV

Which Anatomy Matters Under Limited Labels? A Data-Efficient Anatomy-Aware Benchmark for Cardiac Pathology Prediction

Numerous medical imaging problems must be solved under limited labels and constrained compute, yet it remains unclear whether performance gains are driven mainly by more expressive models or by better representation of clinically meaningful anatomy. We study this question through a low-data anatomy-aware benchmark for 5-class cardiac pathology prediction on the public ACDC MRI dataset. Using segmentation-derived patient descriptors from the right ventricle, myocardium, and left ventricle, we compare anatomy-specific and multi-structure representations across linear, kernel, and tree-based classifiers. We find that under limited label settings, representation dominates complexity. These results suggest that in resource-constrained healthcare settings, identifying and representing the most informative anatomy may matter more than the increasing complexity of the model alone.

Himanshu Singh

Computing & Artificial Intelligence Division, Los Alamos National Laboratory, Los Alamos, NM 87545, USA.

Healthcare Medical Image Analysis Medical Image Classification Medical Image Representation Learning Medical Image Benchmarks Cardiac MRI+1

May 25, 2026cs.CV

How Far Has AI Come in Liver Fibrosis Staging? A Large-Scale Real-World Dataset and Benchmark

Despite years of methodological progress, how far AI has come in liver fibrosis staging has never been systematically evaluated under the heterogeneous, multi-center conditions that define clinical practice. To address this gap, we introduce LiFS, a large-scale dataset and benchmark derived from the MICCAI 2025 CARE-Liver challenge, comprising 610 patients across multiple centers and scanners with multi-sequence MRI. To the best of our knowledge, LiFS is the first benchmark providing complete gadoxetic acid-enhanced sequences with histopathology-confirmed annotations from diverse real-world scanners. Through systematic evaluation of 9 independently developed methods selected from 96 registered teams against in-cohort radiologist reference results, our findings address how far current AI has progressed toward clinical-level liver fibrosis staging from three complementary perspectives. First, against radiologists, the best AI methods were broadly comparable to the senior radiologist and significantly exceeded the junior radiologist in selected settings, while median AI performance generally approached junior-radiologist levels. Second, from a data perspective, cross-center heterogeneity, label imbalance, and contrast-enhanced sequence variability emerge as the dominant challenges for AI methods. Third, from a technical perspective, methodological design choices, including spatial registration, input dimensionality, multi-modal fusion strategy, and backbone architecture, appear to modulate cross-center robustness, although no single choice alone closes the gap. Overall, LiFS provides a rigorous real-world benchmark for positioning the current state of AI in liver fibrosis staging and for enabling future research on the key challenges that limit clinically reliable deployment.

Yuanye Liu, Nannan Shi, Zhejia Zhang +20

School of Data Science, Fudan University, Shanghai, China · Department of Radiology, Shanghai Public Health Clinical Center, Fudan University, Shanghai, China · Department of Electrical and Computer Engineering, Northwestern University, Evanston, USA +12

Medical Image Classification Medical Image Benchmarks

May 25, 2026cs.CV

Are We Overconfident in Models and Results for Semi-Supervised 3D Medical Image Segmentation?

Semi-supervised learning has become a dominant paradigm for reducing annotation costs. However, we argue that the current progress is clouded by a twofold overconfidence problem. Algorithmically, mainstream pseudo-labeling frameworks often conflate prediction confidence with uncertainty, leading to severe confirmation bias. Strategically, since multiple benchmark datasets lack dedicated validation sets, some studies use the test set for validation as well, leading to inflated performance estimates. Subsequent methods, compelled to employ the same strategy to surpass reported SOTA, trigger an arms race of overfitting. This raises concerns that the impressive numerical gains in the community may reflect overfitting rather than genuine progress. Thus, we propose a tri-space calibrated segmentation framework founded on a principled dual-axis reliability assessment engine. It explicitly decouples confidence from uncertainty and uses this signal to detect and correct confirmation bias across feature, probability, and image spaces in a collaborative manner. Across three benchmark datasets, TCSeg consistently delivers strong performance under existing evaluation protocols. More importantly, we advocate that the community report final-checkpoint results under multiple-run protocols, thereby establishing more rigorous benchmarks with a more realistic perspective. Code will be available: github.com/DirkLiii/TCSeg.

Jun Li, Ziwei Qin

Institute of Systems Science and Technology, School of Electrical Engineering, Southwest Jiaotong University, China.

Benchmark Contamination Semi-Supervised Medical Image Segmentation Pseudo-Labeling 3D Medical Image Segmentation Semi-Supervised Learning Segmentation Uncertainty Estimation+1

May 24, 2026eess.IV

Methodology for Creating a Clinically Verified Dermoscopic Image Dataset

This study presents a methodology for constructing a clinically verified dataset of dermatoscopic images for medical informatics research. The relevance of the work is driven by the fact that the performance of automated diagnostic support systems depends not only on the volume of images, but also on the reproducibility of the image acquisition procedure, the completeness of structured metadata, and the reliability of diagnostic labels. International collections were primarily created under conditions that differ substantially from routine Russian outpatient practice and mobile dermatoscopy. The proposed methodology integrates three interconnected components: (1) a standard operating procedure (SOP) for acquiring images via mobile dermatoscopy, (2) an information model comprising 16 structured metadata fields organized into six clinically oriented blocks in ISIC-compatible notation, and (3) a multi-stage expert verification of diagnostic labels (initial clinical annotation, consensus review by three specialists, and histological confirmation of all malignant neoplasms). Using this methodology, a dataset of 1,026 unique dermatoscopic images from 443 patients was collected between June 2025 and May 2026. From 1,044 initial records, 18 duplicates were excluded. The dataset includes nine nosological categories; all 39 malignant lesions (18 melanomas, 15 basal cell carcinomas, and 6 squamous cell carcinomas) were histologically verified. Patient age ranged from 2 to 90 years (median 38), with 279 females (63%) and 164 males (37%). Each image is accompanied by expert-annotated dermatoscopic structures and an explicit verification_stage field indicating the level of diagnostic confirmation. The resulting dataset serves as a pilot clinically verified resource suitable for independent model evaluation, domain shift analysis, interpretability studies, and further expansion.

Kozachok Elena Sergeevna

Ivannikov Institute for System Programming of RAS, Moscow, Russia

Training Data Curation Medical Image Benchmarks

May 23, 2026cs.LG

MedicalRec: Medical recommender system for image classification without retraining

The emergence of machine learning and deep learning has revolutionized the efficiency of diagnostic, therapeutic, and administrative systems in healthcare. However, this rapid adoption has come at the cost of requiring significant computing power and energy consumption, as well as e-waste disposal and carbon emissions. One of the challenges of these models is choosing the right model for classification tasks. To this end, researchers attempt to identify the optimal model using their data through trial and error, which involves energy consumption and waste. The goal of this study is to develop a model-based recommender system for medical image classification. For this purpose, a data set was collected from 3,000 articles in the field of medical image classification. This dataset, publicly available under the name MedicalRec-Bench, contains over 5,000 records of models tested in various tasks, including Skin Cancer Classification, Tumour Classification, Wound Classification, Breast Cancer, and MRI classification. The dataset was evaluated in four different modes, depending on the number of features: MedicalRec I (5 features), MedicalRec II (9 features), MedicalRec III (11 features), and MedicalRec IV (18 features). Collecting all values for the features is challenging due to non-reporting by the authors; hence, the dataset contains significant amounts of missing values. The Medical Recommender System (MedicalRec) is a transformer-based model used for item recommendations in this study. This model achieved remarkable results in the evaluation on the dataset and in the evaluation with 12 base models. This model achieved a maximum HitRate@100 of 75.5%. The dataset and implementations are available through the GitHub link: https://github.com/Ramin1Mousa/MedicalRec

Roghayeh Taghavi, Aysa Hasanazde Bashkandi, Amir Ali Bengari +5

Model Selection Healthcare Medical Image Classification Classification Recommender Systems Medical Image Benchmarks

May 23, 2026cs.CV

Med-R2: An Adversarial Benchmark for Evidence-Grounded Reasoning in Medical VLMs

Vision-language models have demonstrated impressive capabilities in general medical visual question answering, yet due to limited interpretability, it remains unclear whether their predictions reflect evidence-grounded clinical reasoning or reliance on spurious priors. We introduce Med-R2 Bench, a hierarchical benchmark aligned with the clinical workflow to evaluate adversarial robustness with visual grounding. We design stepwise QA tasks to assess whether reasoning chains are strictly grounded in visual evidence across the four clinical stages, and employ adversarial perturbations to test robustness against misleading cues. Med-R2 comprises 42,432 images, 31 task categories, and 110,406 QA pairs. Evaluation across 14 VLMs reveals a sequential performance degradation along the four-stage clinical workflow. Adversarial experiments show that models rely heavily on correct prompts to guess answers. Even when provided with explicit visual cues, the models struggle to accurately align textual descriptions. Finally, we demonstrate stepwise fine-tuning using our hierarchical data significantly improves reasoning robustness, highlighting its potential to drive future improvements in evidence-based medical AI.

Wen Ma, Fucheng Niu, Zhiting Fan +3

Zhejiang University, Zhejiang, China · Guangdong Institute of Intelligence Science and Technology

Adversarial Attacks on VLMs Healthcare Medical VLMs VLM Reasoning Visually Grounded Reasoning Medical Image Grounding+1

May 22, 2026cs.CV

EchoVQA: Enabling Conversational Assistance for Point-of-Care Cardiac Ultrasound

Point-of-care transthoracic echocardiography (TTE) enables cardiac assessment in virtually any clinical setting, yet its diagnostic utility remains constrained by the expertise required for image acquisition and interpretation. Visual question answering (VQA) offers a promising paradigm for bridging this expertise gap through interactive clinical assistance, but existing echocardiography VQA datasets are limited in scale, restricted to high-quality images, and only cover a few views. We introduce EchoVQA, the first large-scale VQA dataset for echocardiography, comprising 14,299 images and 74,819 question-answer pairs. The dataset integrates public sources (EchoNet-Dynamic, CAMUS) with our own point-of-care acquisitions from two handheld probes (Lumify, Clarius), spanning diverse views and including both high-quality and suboptimal images. Uniquely, EchoVQA includes acquisition guidance questions to help users optimize transducer positioning toward a diagnostic apical 4-chamber view for left ventricular ejection fraction estimation -- a challenging task for novice operators in point-of-care settings. We further develop a parameter-efficient method based on multimodal learnable prompts achieving state-of-the-art performance on most benchmarks, including EchoVQA, with significantly less trainable parameters than existing state-of-the-art approaches.

Filippos Bellos, Yutong Li, Jessie N Dong +6

University of Michigan · University of Pennsylvania · Independent Scientist

Medical VQA Echocardiography Ultrasound Imaging Medical Image Benchmarks

May 22, 2026cs.CV

DDX-TRACE: A Benchmark for Medical Diagnostic Trajectories in VLMs

Medical diagnosis is not a single prediction from a fully specified vignette. It is a sequential workup: clinicians decide what evidence to obtain, revise a differential diagnosis, and stop when the diagnosis is sufficiently supported. Most medical AI benchmarks instead reveal the relevant context upfront and score only the final answer, making unsupported correct guesses, premature closure, inefficient workups, and poor uncertainty updating invisible. We introduce DDX-TRACE, a physician-adjudicated benchmark for multimodal neuroradiology that evaluates diagnostic trajectories under hidden evidence over 211 challenging cases. Each case begins with limited clinical history; models request imaging studies in free form, receive matched image bundles when available, update a probabilistic differential diagnosis after each turn, and stop with a localized final diagnosis. Evaluating state-of-the-art VLMs, we find that final diagnosis scores can substantially misrepresent workup quality: models may guess plausible diagnoses without essential evidence, request useful studies but misinterpret raw images, or acquire evidence inefficiently while updating uncertainty poorly. Controlled evidence variants isolate bottlenecks in planning, visual evidence extraction, and downstream differential reasoning. DDX-TRACE shifts medical AI evaluation from final answers to evidence-supported diagnostic trajectories.

Jiazhen Pan, Weixiang Shen, Jun Li +7

Technical University of Munich (TUM) · TUM University Hospital · Munich Center for Machine Learning (MCML) +3

Medical Imaging Radiology VLMs Healthcare Clinical Reasoning Multimodal Model Evaluation Differential Diagnosis+1

May 22, 2026cs.CV

Exploiting Longitudinal Context in Clinician-Verified Interactive Lesion Tracking

Tracking tumor lesions across serial CT scans is essential for oncological response assessment. Existing automated methods face a fundamental trade-off: end-to-end trackers achieve high automation but offer no opportunity to correct silent tracking failures, while decoupled registration-segmentation pipelines permit user verification yet discard the lesion's prior appearance, limiting accuracy in ambiguous cases. In this work, we propose a Verified Tracking paradigm: a clinician verifies a registration-proposed prompt, which the model leverages alongside the baseline lesion appearance to resolve segmentation ambiguities. We present a unified framework combining early spatial prompt fusion with latent temporal difference weighting for longitudinally-informed segmentation. To address data scarcity, we leverage large-scale synthetic pretraining, proving essential for exploiting longitudinal context, improving performance by up to 4.5 Dice points over training from scratch. Our approach secured first place in the MICCAI autoPET IV challenge. We further curate and release PanTrack, a new longitudinal pancreatic cancer benchmark, to assess out-of-distribution generalization. Experiments show that our model outperforms prior work in both fully automatic and the proposed verified tracking setting offering a clinically safe middle ground between automation and control. Code, model and dataset will be released at https://github.com/MIC-DKFZ/LongiSeg

Yannick Kirchhoff, Maximilian Rokuss, Daniel Philipp Mertens +5

German Cancer Research Center (DKFZ) Heidelberg, Division of Medical Image Computing, Germany · Faculty of Mathematics and Computer Science, Heidelberg University, Germany · HIDSS4Health – Helmholtz Information and Data Science School for Health, Karlsruhe/Heidelberg, Germany +3

Interactive Medical Image Segmentation Medical Imaging Longitudinal Medical Image Analysis Medical Image Segmentation Oncology Medical Image Benchmarks

May 21, 2026cs.CV

RoboSurg-VQA: A Multimodal Benchmark for Surgical Segmentation-Aware Visual Question Answering

Reliable visual understanding in robot-assisted and minimally invasive surgery (RMIS/MIS) demands more than accurate masks: in clinical practice, clinicians pose language-like questions about procedural context, visibility, artefacts, and the presence of anatomical structures and surgical instruments, often under degraded views caused by occlusion, smoke, bleeding, and specular highlights. We present \textbf{RoboSurg-VQA}, a segmentation-aware visual question answering (VQA) benchmark built by repurposing public surgical segmentation datasets under a shared schema. Each frame is paired with a fixed set of clinically motivated questions spanning procedure context, anatomy (including region), imaging modality/view, surgical artefacts, image quality, and basic visibility and spatial attributes, with closed answer sets to enable consistent evaluation. To scale annotation, we generate candidate answers via constrained prompting with automatic validity and consistency checks, followed by human auditing to improve plausibility and label consistency. We report benchmark statistics, sanity baselines, and common evaluation challenges under challenging surgical conditions. The code will be available on https://github.com/ziyangwang007/Robosurg-VQA.

Chengyi Zhang, Zi Ye, Ziyang Wang

Swansea University, UK · Maynooth University, Ireland · Aston University, UK

Medical VQA Medical Image Benchmarks

May 21, 2026cs.CV

Rethinking Noise-Robust Training for Frozen Vision Foundation Models: A Cross-Dataset Benchmark with a Case Study of Small-Loss Failure

Frozen Vision Foundation Models (VFMs) with lightweight classification heads are increasingly used in medical imaging because they offer efficient and reproducible deployment. Yet noisy-label learning methods for this frozen-feature regime remain poorly understood, and most existing methods still rely on a small-loss assumption inherited from end-to-end training. We present a controlled benchmark of eight noisy-label methods across five medical datasets, three backbones, two noise types, and five noise rates (150 conditions, 6,000 training runs), evaluated with balanced accuracy. The benchmark shows that there is no universal winner: Friedman ranking over the 150 conditions yields

χ^2 = 333.2

(

p = 4.77 \times 10^{-68}

), ELR wins the most conditions (49/150), while CUFIT attains the best mean rank (2.51). The practical cost of method choice grows sharply with noise severity, from 4.5pp on clean data to 18.8pp at asymmetric 40% noise. To explain these benchmark-level patterns, we revisit the small-loss assumption in a representative high-risk regime. Under frozen DINOv2 features, clean and noisy loss distributions overlap by 53--61%, and matched-rate clean-sample detection shows that prediction agreement is markedly more stable than loss ranking under asymmetric noise (3pp vs.\ 13pp precision drop). On ISIC2019 with asymmetric 40% noise, Co-Teaching reaches 68% overall accuracy while collapsing to 35.1% balanced accuracy with zero recall on three minority classes. Together, these results recast noisy-label learning for frozen VFMs as a regime-aware method-selection problem rather than a search for a single dominant algorithm. We conclude with evidence-based guidance and a low-regret feature-space selector for practical recommendation.

Zitong Li, Haoyu Wang

Department of Biostatistics and Health Informatics · King's College London

Vision Foundation Model Adaptation Noisy-Label Learning Noise Robustness Medical Image Benchmarks

May 21, 2026cs.CV

Towards Clinically Interpretable Ophthalmic VQA via Spatially-Grounded Lesion Evidence

Visual Question Answering (VQA) holds great promise for clinical support, particularly in ophthalmology, where retinal fundus photography is essential for diagnosis. However, ophthalmic VQA benchmarks primarily emphasize answer accuracy, neglecting the explicit visual evidence necessary for clinical interpretability. In this work, we introduce FundusGround, a new benchmark for clinically interpretable ophthalmic VQA with spatially-grounded lesion evidence. Specifically, we propose a three-stage pipeline that collects 10,719 fundus images with 15,595 image-level meticulously annotated lesions. To ensure anatomical consistency and clinical validity, all lesions are spatially localized using the Early Treatment Diabetic Retinopathy Study (ETDRS) grid, enabling standardized mapping to nine clinically meaningful retinal regions. Built upon this structured lesion evidence, 72,706 questions are then generated spanning four formats: open-ended, closed-ended, single-choice, and multiple-choice. We further benchmark multiple general- and medical- large vision-language models using dual metrics for answer accuracy and lesion-level reasoning. The experiments demonstrate that incorporating lesion-level visual evidence consistently improves model performance and transparency, highlighting the necessity of explicit spatial grounding for reliable and explainable ophthalmic VQA.

Xingyue Wang, Bo Liu, Meng Wang +4

Department of Computer Science and Engineering, Southern University of Science and Technology, Shenzhen 518055, China · The Hong Kong Polytechnic University, Hong Kong S.A.R., China. · National University of Singapore, Singapore. +2

Medical VQA Fundus Imaging Medical Image Grounding Explainable Medical Image Analysis Medical Image Benchmarks