Ontology

The conventional testing process quickly fails when applied to ML-based systems such as obstacle detection in vehicles: if an obstacle is not detected in a test, classical bug fixing is impossible and an AI system will always retain shortcomings. Test results can therefore only be interpreted statistically, which in turn requires test sets that are not only complete with respect to the operational design domain (ODD) of the system, but also representative of it. To this end, we introduce probabilistically extended ontologies (PEONs): ontologies describing the ODD, augmented with a probability distribution over the partitioning they induce. Instead of unmaintainable conditional probability tables, only marginal distributions and functionally described dependencies need to be specified; algorithms based on couplings and optimal transport complete this specification to a Bayesian network. From a PEON we derive the sampling of representative test cases, rigorous end-of-test criteria for given quality targets and significance levels, and methods for re-evaluating existing test results and for assessing the balance of training data. We demonstrate the practical modelling of a complex ODD using the example of automatic train operation.

Data agents aim to fulfill natural-language instructions over heterogeneous data, including tables, files, and databases. However, data agents face a challenging agent-data gap: heterogeneous data resides outside the agent, while the agent can access it (e.g., column names and file paths) only through generic tools. Existing approaches either let agents directly explore raw data sources or inject manually constructed semantic layers into prompts. However, neither scales well to large heterogeneous data sources nor adapts to different agent behaviors. In this paper, we introduce EvoOntology, a self-evolving ontology layer for data agents. EvoOntology encapsulates the ontology as an MCP server comprising a schema layer, a content layer, and a tool layer, enabling agents to actively query and interact with the ontology at runtime. To this end, we introduce a builder agent for autonomous ontology construction and a self-evolution loop that continuously refines the ontology through attribution-guided typed edits that are accepted only after a backbone-conditional paired evaluation. Experiments on three well-adopted data-agent benchmarks with four LLM backbones demonstrate that EvoOntology consistently outperforms strong baselines and existing semantic-layer approaches, effectively bridging the agent-data gap and enabling more effective interaction with heterogeneous data. Code: https://github.com/ruc-datalab/EvoOntology

Enterprise data lakes accumulate tables faster than human stewards can document or classify them, leaving columns with missing descriptions and unassigned governance labels. This documentation debt undermines data discovery, access control, and regulatory compliance. We present Glyph, a production system that frames two coupled problems, column description generation and column type annotation for data classification, as cooperating LLM agents orchestrated as stateful graphs. The Descriptor grounds generation in the pipeline source code that produces each column, retrieved on demand from an enterprise GitHub via a reasoning--acting tool loop (active Retrieval-Augmented Generation). The Tagger assigns labels from a governed 275-leaf Data Classification Ontology by running three complementary strategies in parallel (a description tagger, a line-of-business regex tagger, and a metadata tagger backed by a fine-tuned contrastive encoder over a vector database), then fuses their ranked outputs with Reciprocal Rank Fusion (RRF). We fine-tune a 6-layer MiniLM metadata encoder with an in-batch contrastive objective, lifting same-tag retrieval on an in-distribution held-out split from NDCG@10 0.55 to 0.92 (MAP@100 $0.19 \rightarrow 0.90$) relative to the stock base encoder. We report end-to-end multi-label tagging quality under a recall-weighted F2 objective across three evaluation groups, an ablation isolating each strategy and the RRF fusion, and the engineering decisions that distinguish Glyph from prior column-type-annotation work and from commercial value/regex sensitivity scanners: value-free and code-grounded design, per-tag provenance, and graceful degradation. Together these make multi-agent LLM cataloging auditable and operable as a production service.

Current LLM memory systems treat all personal facts identically, so stores grow without bound while retrieval precision degrades. The core challenge is lifecycle management: which memories should persist, which should be replaced, and at what rate, conditioned on the behavioral type of each fact. Fortunate Recall (FR) is a composable policy layer that classifies personal facts into a 10+1 behavioral ontology and applies category-specific lifecycle policies (differential temporal decay, slot-key supersession, event-time validity, and category-aware retrieval routing) as deterministic functions over LLM-extracted metadata. FR-Bank, our infrastructure-independent implementation, reaches a 76.9% pass rate on LifecycleBench, a new 516-question temporal-disambiguation benchmark, ahead of Mem0, A-MEM, Memory-R1, and MemoryOS (61% to 70.5%), and 75.2% on the full LongMemEval-S under the canonical Wu et al. judge protocol, so lifecycle policies impose no measurable cost on standard retrieval. A pre-registered ablation locates the gains: replacing the typed layer with three generic lifecycle primitives leaves correctness statistically unchanged (-1.7pp, 95% CI [-6.0, +2.7]), so the generic lifecycle metadata carries the correctness advantage, while the behavioral ontology carries calibration, halving downstream confabulation (12.0% vs 24.2%, p<0.001). End-to-end, FR-Bank cuts confabulation from Mem0's 45.1% to 22.4% over answered queries and from 32.2% to 13.0% over all queries while answering more of them correctly (31.2% vs 18.6%); the ranking replicates on the open-weight Kimi K2.5. The decomposition transfers to BEAM, an independently built benchmark: 46.8% correct vs Mem0's 32.9% over 280 questions, with the ontology's benefit concentrated in contradiction resolution and saturating near seven policy clusters. The ontology, benchmark, and code are released.

Biomedical ontology normalization maps free-text expressions to standardized concepts, enabling consistent integration and analysis of biomedical data. This task remains challenging because lexical variation and subtle distinctions among hierarchically related concepts can obscure concept boundaries. We present OntologyAligner, a three-stage framework that combines ontology-aligned retrieval, large language model candidate reranking, and selective hierarchy-guided refinement. We also construct PhenoNormBench, a unified benchmark comprising 13,390 samples from seven Human Phenotype Ontology datasets. OntologyAligner achieved state-of-the-art performance on HPO normalization, with 88.78% Macro Top-1 Accuracy and 86.75% Micro Top-1 Accuracy, exceeding the strongest baseline by 4.85 and 5.07 percentage points, respectively. Ablation analyses showed complementary contributions from all three stages, and sensitivity analyses demonstrated stability across candidate-set sizes and model backbones. Applications to MONDO, MEDIC, and NCBITaxon further established portability to other ontologies. OntologyAligner offers a generalizable framework for accurate mapping of biomedical text to structured ontology concepts. PhenoNormBench and the code are publicly available at https://github.com/zhelishisongjie/OntologyAligner.

Analysts in emerging equity markets keep answering the same questions. Did fundamentals match the market's response? How does the local currency co-move with returns? Which firms outperform sector and benchmark, and which disclosures coincide with abnormal trading? These answers come from ad-hoc spreadsheets that are hard to reproduce, audit, or trust. We present OntoKG-EQ, a knowledge-based system that makes such queries reproducible, evidence-linked, temporally explicit, valid, and inspectable. It couples a bounded, competency-question-governed core ontology with a provenance-aware knowledge graph in which every class, property, shape, and metric is justified by one of five frozen questions. The system materialises market data into the graph, computes the metrics, validates its structure against declarative shape constraints, answers each competency question with a graph query, derives typed findings, and generates an explanation tracing each result to its observations, evidence, sources, and provenance. We evaluate on curated datasets from three emerging markets (Pakistan, Malaysia, Indonesia). Once each market's data is mapped into the common schema, the ontology, shapes, queries, and rules are reused unchanged. A relational-database baseline shows the graph changes no analytics. Its value is governance, provenance, and self-explaining structure. Because answers are rendered deterministically from the validated graph, their consistency with it is guaranteed by construction. Used as a reference, the system measures how consistently eight open language models transcribe the same evidence (provenance coverage 0.00 to 1.00). A study with a 17-participant convenience panel finds the evidence bundle significantly increased perceived trust and completeness. Code and data are openly released.

Threat hunting increasingly depends on converting unstructured knowledge (e.g., Cyber Threat Intelligence reports) into actionable hunt leads: concise, investigable hypotheses grounded in observable artifacts and adversary techniques. Producing such leads manually is a tedious and hard-to-scale task. Existing automated approaches stop at the entity layer, ignore the defender's operational environment, and analyze each report in isolation. To address these gaps, we introduce AHLERT, a system that automatically extracts relevant, environment-aware, and hunt leads from threat reports through (i) a hybrid retriever that combines dense vector search with multi-hop traversal over a knowledge graph seeded with MITRE ATT&CK; (ii) an ontology-grounding retrieval-augmented generation method that constrains each lead to the defender's own assets and controls; and (iii) an LLM-agnostic framework that emits structured, directly actionable leads rather than loose indicators of compromise. We evaluate AHLERT on public CTI reports for well-known APTs across multiple proprietary and open-weight models. Hybrid evidence retrieval with ontology grounding raises mean F1 by ~2x (0.44 to 0.85) over a single-route flat-RAG baseline, and AHLERT attains the highest effectiveness score (~86.95%) compared with off-the-shelf LLM models.

Enterprise AI deployments fail not from model inadequacy, but because organizations lack a structured substrate encoding how they decide, negotiate, and execute. Generic LLMs carry no firm-specific ontological priors; RAG remains brittle, with no path to executable action; static playbooks encode logic but cannot reason or adapt. This demands an architecture treating tacit-knowledge capture, ontological grounding, sovereign deployment, and auditable actuation as co-designed from the start. This paper introduces the Corporate Language Model (CLM), a framework transforming a firm's structured, unstructured, multimodal, and tacit knowledge into an ontology-grounded enterprise foundation upon which reasoning and governed execution are composed. CLM has five capability planes and four architectural pillars: a Neurosymbolic Mesh coupling generative models with a knowledge graph; a Skill Graph where reusable tactics, personas, objections, and goals are typed and composed; Living Digital Twins modeling functional areas as reasoning surrogates; and a Deep Security Layer enforcing sovereignty, traceability, and human oversight. A Spec-as-Code paradigm bridges grounded intent and executable artifact. CLM is one instantiation of this foundation-centric class. Four contributions follow: CLM is defined as a distinct object of study; the Skill Graph is introduced for compositional explainability by construction; the Wisdom Listener effect is proposed, whereby tacit-capable foundations compound in value with use, connecting to dynamic capabilities and organizational learning; and evidence from a JCI-accredited tertiary hospital in Brazil instantiates three of the six maturity stages under LGPD.

Knowledge graphs describe reality in crisp assertions, while the systems now consuming them, foundation models and autonomous agents, reason natively in probabilities. We argue that this mismatch is why the integration of language models and knowledge graphs remains a data-feeding pipeline rather than a unified reasoning architecture. We envision Semantic Bayesian World Models (SBWMs): a Web that describes the world not as a database of facts but as a shared, evolving fabric of beliefs over knowledge graphs, where ontological axioms constrain priors, observations update beliefs by Bayesian conditioning, and actions intervene upon the world. We work through what an agent gains from such a model: a home-security agent deciding whether the figure at the gate is a courier or a burglar, an actuarial estimate aggregated by entailment rather than by string frequency, a planning task that language models reliably fail, and the estimation of quantities that no document has ever stated. We then set out what the community must build to make them possible: belief annotation over RDF~1.2, probabilistic entailment regimes, semantic calibration layers, and protocols by which agents that have never met can exchange, and disagree over, calibrated beliefs.

Large language models extracting knowledge graphs from text capture only explicitly stated facts, often leaving semantically related entities disconnected across documents. We present an additive, engine-neutral second pass that discovers these latent ties without altering extracted facts. Each document is chunked and embedded once; top-k nearest- neighbor queries across existing chunks yield candidate node pairs via entity membership maps. Candidate pairs are scored using Shepard inverse-distance weighting with a rescaled chord distance metric, avoiding the threshold-collapsing flaw of affine cosine scoring behind a k-NN gate. Un-gated per-pair accumulators form a commutative monoid, ensuring the pipeline is strictly order-independent and scales incrementally without recomputing prior documents. Implemented across FalkorDB, Kinetica, ArangoDB, and Neo4j, our method shows that 768- and 240-dimensional embeddings retain 92% and 72% edge fidelity against a 3072-D baseline while achieving a 25x faster top-k formulation.

Scientific domain entity linking (EL) differs from general domain EL because mentions and entity names often lack lexical overlap. Another challenge is that specialized terminology is used in the scientific domain, which is rarely encountered in models pretrained on general domains. Therefore, models trained on general domains transfer poorly to scientific domains. To address this, in-domain fine-tuning is the natural remedy. However, many scientific domains lack expert-annotated data, motivating the need for a zero-human-annotation approach. Existing zero-shot methods heavily rely on LLMs to generate aliases across entire mention corpora, which incurs substantial computational cost, and those methods provide no mechanism to filter out noise from LLMs. To address these challenges, we propose Sci-ZSEL, a framework that selectively generates entity aliases with an LLM to control computational cost, and applies an ontology-aware filter to remove aliases that semantically drift toward ontology neighbors. Then, filtered aliases are used to construct pseudo-labeled mention-entity pairs for fine-tuning. To enable evaluation of EL under low lexical overlap, we also release a new animal science EL benchmark linked to three livestock trait ontologies, where mentions and entities exhibit substantially lower lexical overlap than in existing benchmarks. Across five benchmarks, Sci-ZSEL outperforms the non-fine-tuned baseline, is most useful on nonoverlapping mentions, and combining it with curated synonyms gives the best performance in most settings.

General-purpose NLP embedding models perform well on linguistic tasks, but their ability to capture symbolic ontological structure remains unclear. We introduce AVA, a systematic framework for evaluating whether embeddings distinguish logic-sensitive relational semantics in ontologies and knowledge graphs. AVA comprises 171,007 contrastive triplets derived from 163 heterogeneous ontologies using hierarchy inversion, relation substitution, and disjointness injection. Each triplet contains an ontology statement, a semantically equivalent paraphrase, and a logic-sensitive hard negative with contradictory relational meaning. We evaluate more than 25 state-of-the-art embedding models and find substantial limitations: the best model achieves only 0.739 triplet accuracy, while hard negative accuracy falls to 0.135. Fine-tuning improves discrimination by a large margin but transfers poorly to downstream Semantic Web tasks, including taxonomy discovery and ontology alignment. Further analysis suggests that improvements stem partly from perturbation-specific pattern recognition rather than robust ontological understanding. These findings reveal a persistent gap between linguistic representation learning and ontology-level discrimination, challenging the assumption that strong NLP benchmark performance translates to Semantic Web competence.

Ontology learning from text remains challenging despite significant progress in Large Language Models (LLMs), which can hallucinate domain terms, produce inconsistent formats, and favor hierarchical over associative relations. In the LLMs4OL 2026 Challenge, we address both the End-to-End Flagship Task (Task A) and Ontology Extension Reuse Task (Task B) using an offline retrieval-augmented few-shot prompting pipeline. Our system employs Qwen2.5-14B-Instruct with all-MiniLM-L6-v2 for demonstration retrieval, selecting the top-5 examples for Task A and top-2 for Task B. A left-truncated context-windowing strategy preserves task instructions within long prompts. For Task B, generated triples undergo deterministic vocabulary-constrained filtering, retaining triples when at least one endpoint belongs to the sample's closed term/type vocabulary and removing duplicates of the initial ontology. The approach achieves Semantic Graph Similarity of 0.8692, Term-Typing F1 of 0.9200, and Taxonomy Discovery F1 of 0.8540 on Task B, while Task A achieves 0.7416 Semantic Graph Similarity. However, no non-taxonomic relations are extracted, highlighting limitations of closed, taxonomy-oriented relation vocabularies.

This article presents an ontology-supported approach to tackle the complexity of the Robustness Validation (RV) process of automotive electrical/electronic (E/E) components. The approach uses formalized knowledge from the RV process and stress, operating, and load profiles, so-called Mission Profiles (MPs). In contrast to the error-prone industrially established manual procedure, we show how component characteristics are formalized in OWL in order to form the foundation of an efficient automated analysis selection and decision support during the RV process. Additionally, a rule-based transformation of component characteristics upon propagation via SWRL is described. The proposed approach is based on the idea of mapping MPs to an OWL representation in order to allow to execute semantic queries against MP data to improve their integration into the RV process. The resulting ontology-supported application framework has been applied to an industrial use-case from automotive power electronics. A generalization of the approach is described and demonstrated by applying it to stress test selection within the AEC Q100 standard. We present experimental results showing that the RV process can be significantly improved in terms of reduced design time and increased exhaustiveness by automating the analyses selection step and the provisioning of all the relevant data to be used.

The OWL 2 EL profile is used in some of the largest production ontologies, including the Gene Ontology and SNOMED CT. Existing neuro-symbolic (NeSy) learning methods accept propositional theories or Datalog, and reasoning-shortcut (RS) awareness has not been investigated in ontology settings. We present Moose, a method that compiles an $\mathcal{EL}^{++}$ TBox and finite ABox to a Sentential Decision Diagram (SDD). The SDD acts as a differentiable weighted-model-counting layer, and we add closure clauses outside the $\mathcal{EL}^{++}$ profile on declared exhaustive families to overcome the limited expressivity of $\mathcal{EL}^{++}$ under partial supervision. We show termination, soundness, completeness, and polynomial intermediate sizes, and validate the proofs in Lean. We then define the first formal partial-supervision latent-concept-learning task over an OWL EL ontology, i.e., learning per-individual classifiers for latent concepts from observed ABox literals, and evaluate Moose on MNIST-with-ontology and Pizzaïolo. Moose improves over propositional-NeSy, fuzzy-logic, and ontology embedding baselines, and presents the first reasoning-shortcut analysis in an OWL EL setting.

Decentralization as a concept in computer science has existed for over half a century. Despite its fundamental role across domains such as security, distributed computing, artificial intelligence, cloud infrastructures, and Internet of Things (IoT) architectures, there remains no universally accepted definition of decentralization applicable across computer communication systems. This has become increasingly problematic with the emergence of decentralized AI and machine learning paradigms, including collaborative training, distributed inference, blockchain-based, and agentic AI, where decentralization is often treated as a core design objective. Meanwhile, existing approaches frequently conflate decentralization with related notions such as distribution of trust or specific implementation paradigms. Such ambiguity creates inconsistencies in system analysis, limits comparability between works, and weakens the rigor of formal reasoning surrounding communication architectures and protocol design. In this work, we define this research gap as the Decentralization Problem. We analyze the formal-semantic, epistemological, and pragmatic foundations of decentralization and introduce a graph-based ontology defining it as both relational and subject-specific property of computer communication systems. The framework formally distinguishes decentralization from distribution and supports evaluation through two novel metrics: Void Tolerance and Imperviousness. We also provide a browser-based implementation that enables automated classification and metric computation of arbitrary systems. Instantiations to federated learning and blockchain architectures show consistent, comparable assessments where existing definitions produce incomplete or contradictory conclusions, providing a domain-independent foundation for analysing decentralization across heterogeneous systems.

Institutional policies stay in natural language while the systems that check compliance demand machine-readable constraints. Bridging that gap is still done by hand. PolicyKG closes the loop. It is an LLM pipeline that reads a policy PDF, classifies each sentence as an obligation, permission, or prohibition, lifts the label into first-order deontic logic, and emits SHACL constraints. Four stages run on a LangGraph state machine with per-stage validators. The piece that matters most is the Corpus Adapter: a YAML vocabulary registry that grounds LLM predicates in a target ontology. Retargeting to a new domain means swapping the registry, not retraining a model. On the Asian Institute of Technology Policies and Procedures corpus (1,663 sentences, 443 rules), PolicyKG reaches 86.9% deontic classification accuracy (Cohen's kappa = .709). Three annotators independently re-label a 50-item sample and agree at Fleiss' kappa = .844. SHACL shape correctness on a 69-shape subset is F1 = .866. The FOL path handles 79.2% of rules; the rest go through a direct NL-to-SHACL fallback. We audited every one of the 443 rules for second- or higher-order constructs. An automated regex checklist flagged none, and a first-author pass on the 92 FOL-fallback cases confirmed the same. The exact upper 95% Clopper-Pearson bound on the true HOL rate is 0.67%. This is an audit finding for one corpus, not a proof of FOL sufficiency for institutional policy. Swapping the AIT registry for a GDPR registry raises exact property alignment from 1/15 to 11/15 (Fisher's exact p < .001; Cohen's h = 1.53). On the LexDeMod lease-contract benchmark (N = 200), Macro F1 drops to .370 because lease English uses "shall be entitled" for permission -- exactly the vocabulary mismatch registry swap is meant to fix. Repeated runs produce hash-identical SHACL outputs.

Public infant cry corpora are small, label-incompatible, and almost always evaluated one corpus at a time. We ask what this practice hides and what fixes it. Across four cry corpora screened by a multi-level leakage audit (byte-level and embedding-level deduplication plus a within-corpus train-test near-duplicate audit), we probe four frozen encoders and a handcrafted baseline under a unified five-class need ontology and shared task formulations. The audit exposes what single-corpus evaluation conceals: within-domain macro-F1 swings by 0.57-0.80 for the same encoder, cross-corpus transfer is negative on average (negative-transfer ratio 0.19-0.35, significant in 18 of 30 directed cells, BH-FDR), and 349 content-identical clip groups carry conflicting metadata labels across corpus distributions. The same audit, however, reveals a consistent way forward. Transfer into the noisiest corpus is consistently positive in effect size at matched training size and after near-duplicate removal, offering a practical recipe for small, noisy corpora. Frozen probes saturate at modest label budgets, while stabilized fine-tuning wins with full labels; domain-adaptive pretraining significantly beats stabilized fine-tuning at 5-10-shot (the 1-shot advantage is not robust to optimization-seed variance) but shows no significant advantage at 50-shot or beyond. In the tested binary, shared-label settings, ontology-mapped joint training wins in all four encoder-by-target combinations, whereas naively merging unmapped labels costs up to 37 F1 points. We release the ontology, mapping code, and audit pipeline, turning incompatible cry corpora into a usable joint-training resource.

Industrial device commissioning requires engineers to manually extract hundreds of protocol-specific parameters from heterogeneous PDF manuals and transcribe them into supervisory control systems, a time-intensive, error-prone workflow. This paper presents SysName, a production-oriented pipeline that automates device configuration end-to-end for Modbus RTU, OPC-UA, Profibus DP, and CANopen. It builds a hybrid dense-sparse retrieval index augmented by an ontology graph derived from ECLASS, AAS, and SOSA/SSN, using a BGE-M3 encoder with a cross-encoder reranker to surface relevant manual passages. A local LLM (T=0.1) generates ontology-aligned JSON-LD configurations via protocol-specific prompts and a four-step repair pipeline. A two-stage abstention gate, combining a reranker-score threshold and an IRI resolution ratio, blocks unsafe LLM invocations and filters low-coverage configurations before SHACL validation. On a gold set of 28 field-level queries, the hybrid retriever reaches 0.96 HitRate@10, and the reranker raises MRR@10 from 0.56 to 0.63 with perfect score separation for abstention. The generator attains field-level F1=0.87 with exact match on 9 of 12 runs. End-to-end runs on an H100 GPU complete in 2.6-6.6s per device with zero unsafe writes and zero silent failures on a five-device benchmark; every unsuccessful run is flagged by abstention or deployment verification. Component-wise evaluation localises the single systematic failure to OPC-UA generation, invisible to end-to-end metrics alone. A case study commissions a physics-simulated Universal Robots UR5e robot from unmodified vendor documentation (254-page manual, 8-page register list, 496 chunks), reaching field-level F1=1.0 over three runs with read-back and joint-consistency verification. An ablation study and comparison with five industrial-LLM systems complete the analysis.

In this paper we discuss the foundations behind a novel methodology for the validation of semantic mappings between different data sources based upon different foundation ontologies, where the methodology builds a framework based upon the metaphysical commitments of the ontologies. We provide as example the test case of mappings between IES and BFO, and we especially focused on providing cardinality constraints on the mappings between the two ontologies. In order to demonstrate the applicability of our method, we showcased how these principles can be operationalized through SPARQL queries validating the results of a mapping pipeline.

Gamification is especially effective in learning domains requiring active problem-solving and iterative skill-building, such as cybersecurity education. Generative AI agents offer a path to delivering such experiences adaptively at scale, but introduce well-documented risks in educational settings: inconsistent behavior, hallucinated reasoning, and misalignment with pedagogical frameworks. Grounding these systems in learning science is therefore essential. We present \model, an agentic framework for gamified cybersecurity learning that enables structured autonomy through ontology-guided validation, schema-governed behavioral control, and competency-based progression. The system is organized around a competency-based progression model that structures topics by difficulty and prerequisite relationships, reflecting evidence-based principles of scaffolded instruction. The learning loop is decomposed into four specialized agents: challenge, support, evaluation, and reward, each governed by behavioral schemas that encode operational modes and progression logic, bounding agent autonomy without eliminating generative flexibility. A cybersecurity ontology validates all generated content prior to display, enforcing domain-consistent reasoning and safety constraints. We evaluate CyberAgents through classroom deployment with undergraduate students, complemented by expert evaluations from educators and domain specialists. Results indicate improved engagement, clearer feedback interpretation, and greater learner trust in AI-generated responses when behavioral schemas and ontology validation are active. Preliminary comparisons with an unconstrained configuration further support the role of structured control in stabilizing instructional behavior. These findings offer a blueprint for designing pedagogically grounded agentic gamified learning systems.

The use of ontologies and knowledge graphs is becoming increasingly widespread in the defence and national security domain. Numerous ontologies have been developed through initiatives led by academia, industry, and government. Achieving interoperability across diverse defence and national security ontologies remains a major challenge due to the domain's breadth and specialisation. In this work, we analyse and document over 60 publicly available ontologies and introduce a new track for the Ontology Alignment Evaluation Initiative (OAEI). This track comprises eight matching tasks, consensus alignments and manually-curated (silver-standard) mappings. The consensus alignments are derived by aggregating the outputs of several state-of-the-art ontology alignment systems. The silver-standard is obtained from the manual validation of the consensus alignment together with a subset of the unique mappings (i.e., mappings suggested by only one system).

A geometry-conditioned, neuro-symbolic closed-loop architecture is proposed for laser powder bed fusion, in which a standards-aligned ontology operates inside the control loop and couples symbolic reasoning with statistical learning to set the targets of a constraint-aware predictive controller. The ontology links the process objectives and constraints to the signals a controller can observe, and a description-logic reasoner converts them into the references and bounds enforced on each scan. The demonstrated case is overhang dross, a quality limit on the melt pool depth, which governs quality yet cannot be measured during the build, is mapped through a geometry- and power-dependent depth-to-width ratio onto a bound on the observable width, with the ratio and its calibrated uncertainty supplied by a Gaussian process. The reasoner classifies each upcoming feature and selects the active constraints-adding a lack-of-fusion floor at overhangs, a monotone guard beyond the calibrated range, and an energy-density cap where a process window is declared while running only on changes of geometric context and otherwise leaving a single small quadratic program on the per-scan path. In an Eagar-Tsai surrogate calibrated to the NIST AM-Bench benchmark for IN625, the architecture eliminates the dross produced by a geometry-blind controller, holds dross at zero with only a small residual lack-of-fusion under dual scoring, degrades gracefully under deliberate plant mismatch, and retargets to new alloys and constraints by editing ontology data rather than code. The results establish architectural feasibility, experimental calibration of the ratio is the principal next step.

The emergence of the ISO standard GQL introduces a powerful query language extending first-order logic with controlled recursion, raising the question of its applicability to evaluation of ontology-mediated queries (OMQs). We focus on OMQs consisting of atomic queries over ontologies expressed in Horn-ALCHI, an expressive Description Logic that is not, in general, first-order rewritable. To address this, we introduce DL automata, a novel formalism that captures the semantics of such OMQs via runs over fact sets. We then identify a large class of DL automata that can be rewritten into unions of conjunctive two-way regular path queries (UC2RPQs), a central fragment of GQL. Our class of automata relies on a stratification of their states, ruling out specific forms of cyclic dependencies known to raise the complexity. This yields a broad class of Horn-ALCHI OMQs that are GQL-rewritable.

We propose the SECUMAN ontology and shapes for representing and analysing cybersecurity risk-management documentation for medical devices. Cybersecurity risks are increasingly relevant for connected medical devices and may have direct consequences for patient safety. Current risk-management files are often maintained as semi-structured natural language text, which makes consistency checking, certification review, and reuse difficult. SECUMAN provides a formal OWL-based vocabulary for modelling security-risk context, assessment, control measures, and residual-risk evaluation, and uses SHACL constraints to check structural completeness and conformity with the intended documentation model. The ontology is aligned with VDE Spec 90025 and the related RISKMAN ontology and shapes, while extending their safety-oriented approach to concepts relevant to cybersecurity risk documentation such as threat scenarios, protection goals, attacker profiles, exposure levels, assets, and secure design arguments. SECUMAN is intended to support automated first-pass validation, traceability, and integration of cybersecurity and safety risk-management documentation.

Fault detection and diagnosis (FDD) technology is essential for improving HVAC system reliability, energy efficiency, and maintenance effectiveness. However, effective deployment of FDD solutions in buildings requires structured domain knowledge that can bridge heterogeneous data sources, diverse equipment types, and varied diagnostic outputs. Limited data interpretability and interoperability within the FDD domain have led to fragmented information silos, hindering the implementation of FDD and related applications, such as the digital twin-enabled FDD frameworks and artificial intelligence (AI)-driven maintenance decision-making systems. This paper presents an FDD Ontology (FDD-ON), a modular and extensible ontology to formally represent variable air volume (VAV) HVAC system components, fault types, symptom statuses, fault impacts and associated attributes. FDD-ON integrates HVAC system FDD semantics to provide comprehensive representations of fault and symptom attributes, supported by the well-defined controlled vocabulary. Additionally, FDD-ON offers comprehensive fault, symptom, and impact libraries to capture a broad spectrum of operational abnormalities and their consequences in VAV HVAC systems. Through explicit contributing cause-fault-symptom-impact relations, FDD-ON serves as a machine-interpretable basis for querying diagnostic knowledge, mapping heterogeneous FDD outputs, and developing interoperable FDD-related applications. FDD-ON is evaluated using publicly available VAV HVAC system datasets and demonstrated through FDD development applications. Results indicate that FDD-ON provides a foundational semantic framework for advancing scalable, transparent, and interoperable FDD solutions across various applications.

Datalog rules are often used to define ontologies over Knowledge Graphs. Rule reasoners routinely optimise such ontologies by rewriting their rules into a form that can be evaluated more efficiently. These transformations preserve the entailed facts, but not the structure of the underlying derivations. A proof tree under the rewritten rules explains why a fact holds, but does not readily yield an explanation in terms of the original rules. We study the problem of constructing, from a proof of entailment under the rewritten rules, a proof under the original ones: we establish its computational complexity and identify two practically relevant languages for specifying proof transformations.

Organizations increasingly define operational metrics in structured, machine-readable formats to monitor systems, processes, and compliance. These metric definitions implicitly encode domain knowledge, such as referencing concepts, properties, and relationships, that often extends what is captured in formal ontologies. Yet the connection between operational metric catalogues and ontological knowledge remains manual, ad-hoc, and labor-intensive. We present COntExt, a framework for context-aware ontology extension that takes structured metric definitions as input and suggests how referenced concepts and properties should be integrated into an existing ontology, utilizing the context of these metrics. The framework defines the extension problem as three sub-tasks: parent class prediction, relation type prediction, and data property assignment. Across four cybersecurity ontologies, we evaluate different algorithms for each task. Our results show that metric-derived context improves the suggestions over ontology-context baselines for relation type prediction and data property assignment. Our work demonstrates that operational metric catalogues are a practical and underexploited source for ontology extension. This work enables organizations to maintain their ontologies at a significantly lower cost than manual engineering.

We propose the Virtual Process Dossier (VPD), a Knowledge Graph-based data catalogue that also captures workflow provenance. We developed VPD for multi-stage manufacturing use-cases where downstream AI-based optimization tasks require to distinct between datasets generated during individual workflow steps. VPD provides these datasets in a FAIR manner and makes both prospective and retrospective workflow provenance explicit. Our contributions are: (1) the VPD ontology that serves as the catalogue's semantic core; (2) the VPD provenance framework that integrates ontology instantiation into the production environment; and (3) the VPD user interface that provides human-centered interaction with the VPD Knowledge Graph. The ontology and code are available at https://github.com/kubeluk/VirtualProcessDossier .

Ontology matching (OM) has traditionally been formulated as either equivalence discovery or subsumption matching. The existing OM systems identify only one type of semantic correspondence and cannot simultaneously discover equivalence and subsumption mappings. In this paper, we introduce Hybrid Ontology Matching (HOM), a new OM task that unifies equivalence and subsumption discovery, and accordingly propose a Large Language Model (LLM)-based multi-agent OM framework AgentMap that is implemented by a series of interdependent semantic decisions. Given a concept in the source ontology, AgentMap integrates semantic retrieval, hierarchical search, and collaborative multi-agent LLM reasoning to progressively explore the target ontology, identifying either the equivalent concept, if one exists, or the most fine-grained subsumer. We further extend four OM datasets for a HOM benchmark and evaluate AgentMap under hybrid, equivalence-only, and subsumption-only settings. Experimental results show that AgentMap achieves promising performance on the hybrid setting, and at the same time outperforms equivalence matching and subsumption matching baselines on the equivalence-only and subsumption-only settings, respectively.

Maintenance regulations are complex legal texts that are difficult to exploit when addressing a specific case and challenging to integrate into operational systems. This paper presents a two-stage LLM-assisted workflow for French maintenance regulations: ontology engineering from a SEMLEG-based core ontology, followed by construction of an ontology-grounded French legal knowledge graph. The first stage consists in the open extraction of typed entities and triples from a stratified corpus sample, the normalization of labels through embedding-based fusion, and the induction of candidate object properties with their signature (domain and range). The second stage uses the resulting ontology to guide the closed extraction of triples and RDF graph construction over the full corpus. Experiments with GPT-4.1 and mistral-large-2512 show robust structured outputs, near-complete class alignment, and a substantial reduction of duplicated entities and predicates after fusion. Fewer than 20% of triples introduce unseen properties, while lower exact signature compliance reveals new domain-range combinations for existing predicates. These results point to predicate normalization and the validation of newly observed relation signatures as key refinement steps for industrial maintenance settings.

Machine learning interatomic potentials (MLIPs) approximate quantum-mechanical energies and forces---conventionally computed by density functional theory (DFT) or wave-function methods---at a fraction of the cost. The field encompasses a growing ecosystem of algorithms, training datasets, hyperparameters, and target materials, yet the metadata needed to systematically compare, reproduce, and build upon MLIP studies remains scattered across papers, scripts, and ad-hoc file formats. We present the MLIPs ontology, an OWL 2 DL ontology that captures the concepts needed to describe MLIP methods, their hyperparameters, training datasets with DFT provenance, and published benchmarks. The ontology is organized into three modules---Method, Training Data, and Benchmark---and connects existing ontologies in materials science (MDO, CMSO/ASMO) and machine learning (ML-Schema), complementing dataset-side schemas such as Croissant. It declares 27 formal axioms enforcing data completeness and consistency, including property chains that link trained models to their methods and training data. We demonstrate the ontology through a running example based on Moment Tensor Potentials and evaluate it through competency-question execution on a 20-paper seeded knowledge graph, OWL reasoning, and comparison with existing ontologies.

Description logic programs are a powerful formalism for combining rules with ontologies. The well-supported semantics for description logic programs ensures that no answer sets rely on cyclic dependencies. Most popular semantics for logic programming have this property of well-supportedness. We recognize two limitations of the current well-supported semantics for DL programs: its increased computational complexity for the consistency problem and its lack of a reduct transformation characterization. In this work, we present a new semantics which evaluates ontological atoms more strictly than the current semantics. This keeps the complexity of its consistency problem NP-complete, rather than increasing it to the second level of the polynomial hierarchy. Additionally, we identify a syntactic class of description logic programs for which our new semantics is equivalent to the current semantics. We characterize our semantics using a fixpoint operator and a reduct-based transformation. Our new semantics is a strict subset of the current well-supported semantics, so it maintains the prior notion of well-supportedness while inducing its own stricter notion. We prefer our new notion of well-supportedness due to its similarities with logic programming.

Large language models extract entities and relationships from unstructured documents fluently but inconsistently: type vocabularies fracture across documents, the same person surfaces under several name variants, relationships duplicate, and distinct individuals who share a name risk silent conflation. This paper presents the design, implementation, and empirical refinement of a production extraction layer that converts a live document stream into a validated knowledge graph aligned to a formal ontology. The system consumes document metadata from Kafka, routes PDF, spreadsheet, Office, and image content through handlers built for each format, and extracts entities and relationships in two passes using a locally hosted Qwen3.5-9B model tuned on the ontology. Its distinguishing component is ontology-guided extraction: the relevant slice of a curated ontology is retrieved live from a graph database by embedding similarity and injected into the extraction prompt, reducing catalog overhead by about 94 percent relative to static domain slices. Extracted results then pass through a refinement pipeline of five stages: deterministic cleaning, merging across chunks, a second pass for relationships, six deduplication algorithms that require no model inference, and an embedding resolution subsystem whose conflict guard no similarity score can override. Evaluation on intelligence corpora improved search recall from roughly 70 to 95 percent with no false merges, and corrected seven classes of silent quality defect, ranging from a bug that truncated source text by a single character to the systematic duplication of entities that carried title prefixes.

We present OntoBook, a method that converts medical ontology structure into pretraining signal for encoder language models. Our approach has three stages: random walks through ontology graphs capture hierarchical and causal relations between medical codes, a large language model reformulates these walks into fluent textbook-style prose, and the resulting text is used to train ModernCamemBERT, a 149M-parameter French encoder, with two objectives on the same data: masked language modeling and relation prediction between code pairs. On three French medical coding benchmarks (FRACCO, Cantemist-FR, Distemist-FR), OntoBook achieves significant improvements over MLM-only pretraining, with +2.5 micro-F1 on FRACCO and +8.0 micro-F1 on Distemist. We find that alignment between objectives is necessary: misaligned training, where each task uses different data, causes a 30-point degradation. We release 1.3 million LLM-reformulated medical textbooks across three French ontologies (CIM-10, CCAM, ATC) and pretrained model checkpoints.

Ontology extension refers to the process of enriching an existing ontology in response to emerging requirements, making it more complete. This task is a resource-intensive and error-prone process. Large Language Models (LLMs) have shown promising performance on generating ontologies from scratch, but current approaches rarely tie ontology extension explicitly to requirements or reusable core models, and offer limited, systematic evaluation of LLM outputs. This paper introduces OntoExtend, a requirements-driven framework for ontology extension with LLMs. It uses retrieval-augmented generation (RAG) over relevant input ontologies and requirements in the form of competency questions to propose grounded extensions. We evaluate OntoExtend on 39 CQs from two use cases: a public EU-project ontology, Onto-DESIDE, and an industrial ontology from Bosch. The generated fragments show few structural issues, satisfy all functional evaluation tests, and are rated by ontology engineers as requiring minor to moderate revision before integration. These results suggest that OntoExtend is useful as a drafting assistant for requirement-driven ontology extension in real world scenarios, while remaining sensitive to CQ specificity and modelling profile.

This paper frames Generative Artificial Intelligence (AI) not as an unprecedented technological rupture, but as an industrial-scale manifestation of a deeply rooted historical process. Through a genealogy of generative arts, it shows how AI's questions on authorship and creativity have precise historical precedents. A taxonomy of generative systems is proposed across three functional categories (medium, artwork, instrument), the attribution of which is editorial rather than ontological. From individual cognitive atrophy to Model Collapse, the systemic risks of creative automation are identified; environmental enrichment is proposed as an antidote. The role of the artist undergoes a radical metamorphosis: from craftsman of the object to entropic agent, systems designer, explorer, and negentropic curator. This pipeline-based taxonomy rests on a specific premise: the algorithmic system remains medium, instrument, or artwork, while creative agency resides in the humans distributed along it. Algorithmic Repetition is introduced as the aesthetic degeneration of aligned generative systems; the Benjaminian aura does not dissolve in the generative era but condenses upon the productive system. Manifestation is proposed as a third ontological status for generative works, transcending the dichotomy between original and copy. To support the proposed theses, two complementary aspects are examined: the radicalization of distributed authorship; and the reevaluation of older generative models, whose instability constitutes an aesthetic degree of freedom lost by recent ones.

Knowledge Organization Systems like Ontologies and taxonomies are fundamental for structuring scientific knowledge, yet their manual curation presents a persistent bottleneck in knowledge management. While Large Language Models (LLMs) offer a scalable mechanism for automated ontology generation, their capacity to classify complex, domain-specific semantics requires systematic evaluation. In this paper, we assess the performance of five small, open-source LLMs (up to 9 billion parameters) in identifying semantic relationships between biomedical concepts. To support this evaluation, we introduce MeSH-Rel-4K, a dataset comprising 4K semantic relationships extracted from the Medical Subject Headings (MeSH). We analyse three adaptation strategies: standard prompting, Chain-of-Thought prompting, and fine-tuning. While parameter-constrained models traditionally struggle with the nuances of in-context logic, our results reveal that targeted fine-tuning increases the average F1-score by 34.1 percentage points. These results confirm that direct fine-tuning effectively exceeds the reasoning bottlenecks of smaller LLMs, providing an accurate, automated methodology for the construction and evolution of specialised biomedical ontologies.

Large language models encode world models implicitly in neural weights, which exposes four structural risks in high-precision domains such as medicine and finance: hallucination, frozen knowledge, poor explainability, and poor modifiability. This paper proposes data-first ontology: LLMs are treated as reasoning and language engines, while deterministic knowledge is moved into an explicit multimodal database, DaoQL. We formalize an explicit world model and show that, under rule independence, deterministic evaluation, and fixed conflict resolution, explicit models provide a sufficient condition for composable counterfactual decomposability; implicit models lack atomic read/delta semantics and therefore provide no comparable architectural guarantee. The implemented system focuses on DaoQL's verified storage layer and explicit Eval path, integrating graph, column, vector, and full-text engines within one process. KVCache graph nodes, expert hot updates, and the DaoQL-Agent runtime remain future work. On an embedded same-machine setup, DaoQL reports graph BFS at 1.20 ms, HNSW at 83.1 us, and a Fluent hybrid query at 105.8 us; these results indicate engineering potential but must be interpreted with deployment-shape differences from client-server systems. Exploratory measurements on LDBC SNB SF1 and ANN-Benchmarks further show 34/34 query coverage with interactive-class queries mostly in the sub-millisecond to millisecond range, but only 1.8 QPS overall due to long-tail BI/IC queries; ANN-Benchmarks reaches Recall@10 >= 99% at thousand-level QPS after a bridge-edge protection fix. In a five-domain counterfactual experiment (n = 1250), DaoQL+GPT-4o achieves 94% composable counterfactual decomposability, 49 percentage points above GPT-4o alone. The paper explicitly separates provable structure, preliminary empirical evidence, and architectural roadmap claims.

We study Controlled Query Evaluation (CQE), a declarative approach to confidentiality-preserving data access, in the context of Description Logic (DL) ontologies, and for confidentiality policies expressed through Epistemic Dependencies (EDs). We first address the problem of answering queries (specifically, Boolean unions of conjunctive queries) under known semantics for CQE (GA- and IGA-entailment). Our results show that if the TBox is expressed in $\text{DL-Lite}_{\mathcal{R}}$, CQE is computationally intractable in general. Moreover, in the presence of EDs, the IGA semantics has recently been proven not to satisfy an important confidentiality preservation property known as indistinguishability. With the goal of defining computationally easier and confidentiality-preserving forms of CQE, we introduce a new semantics for CQE, based on the notion of minimal policy violation (MPV). We show that the new semantics provides a sound approximation of the previous ones, while satisfying the indistinguishability property. We also prove that, in the case of $\text{DL-Lite}_{\mathcal{R}}$ ontologies, query entailment under the MPV semantics can be decided in polynomial time in data complexity. Finally, we present a software implementation of our framework that we used to evaluate the feasibility of this new approach using an existing benchmark for OWL 2 QL.

The ODRL policy language is emerging as the de-facto standard for policy modelling data access and usage preferences, AI governance policies and data workflows in European dataspaces. The current standard has no mathematical formal semantics to describe how a system should implement policy evaluation. This has resulted in a variety of systems and tools that implement their own interpretation of the language, which limits interoperability and cannot guarantee consistent results. Based on an existing semantic model of ODRL, we formalise the problems of ODRL evaluation for the access control and monitoring scenarios, in both static and streaming settings, and we provide a novel, efficient algorithm and implementation. We present the first ODRL Evaluator with transparent formal semantics and supporting all rule types. We experimentally measure its performance, analysing different scalability dimensions related to policy complexity and size of the data on which a policy is evaluated. We compare our system with the state-of-the-art by providing a comparative review of existing ODRL evaluators, which highlights the differences in supported ODRL features and evaluation modes.

OWL ontologies provide a formal knowledge representation framework that enables semantic reasoning, and have been widely adopted across domains such as healthcare and bioinformatics. In practice, however, real-world ontologies are often incomplete, which pose challenges for reasoning. In this work, we focus on a fundamental subsumption reasoning problem: given an incomplete ontology and a candidate (non-entailed) subsumption, determine whether the subsumption is semantically plausible and, if so, providing a logically sound explanation containing potential missing axioms. This task unifies subsumption verification with ontology abduction, and generalizes the latter by removing the need for a predefined candidate set of missing axioms. To address this subsumption reasoning problem, we propose NeurOWL, an end-to-end neuro-symbolic framework that jointly performs verification and abduction, leveraging both formally defined semantics and textual semantics through Large Language Models and ontology embeddings. We evaluate NeurOWL on real-world ontologies across multiple domains, demonstrating strong and robust performance across different domains.

Modern industrial environments increasingly run many autonomous subsystems at once - schedulers, energy managers, vehicle fleets - each pursuing its own goals while sharing the same physical resources. Because high-level human intentions are translated into low-level control logic and then discarded, no running component can tell whether it is still doing what was actually intended, and goal conflicts surface only after they have caused a missed target or a shutdown. We propose the Intention Abstraction Layer (IAL), a domainagnostic middleware that represents intentions as first-class, persistent, and explainable runtime objects: a large language model grounded in a formal OWL ontology parses naturallanguage goals into structured intentions, a consistency monitor detects conflicts at registration time, before execution, and a transparency module explains them in natural language. We report a first proof of concept in which two autonomous agents register conflicting production and energy intentions, and the IAL flags and explains the conflict before it reaches the execution layer. The result is a mechanism that shifts behavioral assurance for cooperating autonomous systems from post-hoc failure analysis to pre-execution, intention-level checking.

Under the free energy principle, a predictive system does not observe reality directly; it maintains a generative model of the world and experiences that model's best current hypothesis. Can a synthetic environment be made consistent enough that a predictive system's own inference machinery adopts it as this default hypothesis, permanently displacing the environment that first shaped it? We call this state ontological inversion. Because inducing and monitoring such a transition in a nervous system is neither ethical nor technically feasible, we study the underlying computational problem through a controlled proxy: a convolutional variational autoencoder paired with a recurrent latent predictor, whose evidence lower bound objective is mathematically identical, up to sign, to variational free energy itself. The network is trained first on a baseline visual domain, then on a mixed stream in which a swept rehearsal ratio r controls how much baseline content persists during transition to a target domain. Representational capacity, what the latent space can discriminate, is tracked separately from default behavior, what the system generates when left unconstrained. Across a full sweep of 90 runs, the two diverge sharply: representational accuracy stays near ceiling, 0.97 to 0.998, regardless of r, while default behavior spans nearly the system's entire range depending on r alone, a decoupling of learning from acceptance. More strikingly, at intermediate r the system's default output rises toward the target domain, then partially reverts toward the baseline while training continues unchanged, a structural failure we term cognitive relapse. Resistance to reality-adoption is not reducible to learning speed; it is a structural property with its own distinct failure modes, established here as a computational existence proof and nothing further.

The NIS-2 Directive increases the need for continuous, auditable compliance evidence and motivates a shift from document-based compliance toward machine-readable compliance artifacts. The Open Security Controls Assessment Language (OSCAL) is a standard for this purpose, which the German Federal Office for Information Security (BSI) is adapting with Grundschutz++. However, companies are still managing extensive legacy IT security concepts (IT-SCs), and migrating them without verification could transfer outdated assets into the new format. While existing research primarily addresses the generation of new concepts, there is a lack of a verification framework that extracts legacy IT-SCs into an auditable intermediate representation, deterministically compares the extracted graph with an independently constructed reference state, and exports schema-valid OSCAL artifacts. This paper introduces the Automated Security Concept Structure Extraction and Reverse Topology-checking (ASSERT) Framework, which addresses this gap by using ontology-based extraction of legacy documents into formal document graphs, a five-class graph difference against a verified reference graph, and the export into schema-valid OSCAL outputs for system description and assessment evidence. Using the BSI's RecPlast dataset, we compare a local open-weight model and a commercial model across three configurations with different levels of reference-ontology exposure. The evaluation shows that ASSERT makes document-infrastructure inconsistencies measurable, but reveals a trade-off between discovering undocumented entities and enforcing a schema.

Roy Harris's Integrationist linguistics offers a compelling critique of the referentialist tradition embedded deep at the heart of computational approaches to language, arguing that language is not a code that maps onto a pre-given world but a situated, bipartite activity oriented toward prospective joint action. Yet Integrationism leaves certain explanatory gaps: it does not fully account for the structural mechanism by which signs sustain prospective openness, it undertheorises the continuity between linguistic and non-linguistic semiotic activity, and it offers no detailed account of the structural properties of the accumulated archive of past integrations. This paper argues that Elan Barenholtz's autogenerative theory of language, developed in response to the behaviour of Large Language Models (LLMs), can fill precisely these gaps, enriching Integrationism without undermining any of its core commitments. Specifically, the autogenerative account provides: a structural mechanism for the prospective openness that Harris identifies as central to bipartite communication; a computational correlate for Harris's thesis of semiotic continuity between language and other sign-making activity; and a theory of the archive: what the accumulated residue of past integrations looks like and how new participants draw upon it. The synthesis preserves Harris's ontological primacy of the situated integrative act while adding explanatory content that Integrationism itself does not supply. For practitioners and researchers in natural language processing and large language model design, the argument offers a principled account of what the statistical structure that LLMs so effectively exploit actually is, and of what it cannot, by its nature, provide.

Public official-information request records contain process signals. They can support research, workflow review, and human-supervised agent help. Yet they also mix observed correspondence, platform states, inferred events, and legal outcomes. FOI-O is a reusable process-modelling method and verification infrastructure for Freedom of Information administration. FOI-O NZ, based on the New Zealand Official Information Act, is the only implemented and validated jurisdictional profile in the current repository. Broader reuse is a design intent and future validation path, not an empirical result of this package. FOI-O models the request record first. Request profiles, observed correspondence events, controlled vocabularies, and provenance make visible what was seen and how it was changed. It then adds review queues, release metadata, bounded agent contracts, semantic assets, process-model artefacts, and fixture-only process-mining interchange examples. Human certification of legally meaningful outcomes stays outside autonomous tooling. The repository provides JavaScript Object Notation (JSON) Schema contracts, Python data models, Simple Knowledge Organization System (SKOS) vocabularies, Web Ontology Language (OWL), Resource Description Framework (RDF), and Shapes Constraint Language (SHACL) assets. These are supported by deterministic examples, release metadata, quality gates, tests, Business Process Model and Notation (BPMN) and Petri Net Markup Language (PNML) process models, XES and OCEL-style fixture exports, and a planned New Zealand annotation task-set manifest. This article describes the motivation, architecture, ontology-development method, validation evidence, and implementation boundaries. The project is not legal advice, is not an official government publication, and does not certify release, refusal, redaction, charging, extension, transfer, complaint, or publication outcomes.

Ontology learning (OL) aims to automatically construct structured knowledge models from text, yet progress remains fragmented across methods, domains, and evaluation practices. Despite decades of research, OL lacks a shared infrastructure for systematic evaluation and ontology access. This absence has hindered progress and fragmented research, leaving the central challenges of OL largely unaddressed. We introduce OntoLearner, a modular, cross-domain, and first-of-its-kind framework that unifies ontology access, large language model (LLM)-driven learning pipelines, and standardized benchmarking. OntoLearner releases 180 machine-readable ontologies spanning 22 domains and provides pipeline-ready datasets with train/dev/test splits for three core OL tasks: term typing, taxonomy discovery, and non-taxonomic relation extraction. Using this infrastructure, we conduct a large-scale empirical study of OL, evaluating 22 retrieval models and 12 LLMs across domains and tasks. The results converge on a finding that reframes the central challenge of OL: failure modes scale with ontological complexity rather than model size or architectural sophistication. The primary bottleneck is not model capability, but a structural mismatch between how models encode knowledge and how ontologies organize it. These findings establish that effective OL is reachable through the cross-domain, multi-task benchmarking enabled by OntoLearner. OntoLearner is open-source (MIT license) at https://github.com/sciknoworg/OntoLearner/.

Ontology construction requires deciding which objects, attributes, and structural relations should be accepted as valid knowledge. Language models can propose such structures from text, but their outputs can still be unsupported or inconsistent. This paper proposes a retrieval-augmented small language model (SLM) framework that uses formal concept analysis (FCA) as a symbolic verification loop for knowledge expansion. Starting from seed attributes, FCA proposes implications over a growing formal context. A retrieval-grounded SLM oracle then validates each implication or returns a counterexample. The oracle also supports incidence judgments, consistency checks, and attribute proposals, making accepted implications, counterexamples, contradictions, and corrections inspectable. In a rare ataxia setting constructed from Orphadata resources, retrieval-grounded 10-seed runs obtain relation F1 of 0.29-0.52 and closure-based implication F1 of 0.22-0.30. Larger seed sets increase the number of evaluated implications and often improve implication F1. The lower implication scores reflect a stricter evaluation of derived implications, where one missed or extra relation can affect several implication judgments. Ablations show that incidence judgments in a fixed object-attribute setting can improve closure-based implication scores. However, identifying positive object-attribute pairs remains difficult even when the candidate objects and attributes are fixed.

Modern large language models (LLMs) reach 60-70% diagnostic accuracy on complex clinical case benchmarks, but accuracy alone cannot distinguish stable clinically-grounded reasoning from pattern matching. We introduce clinical reasoning graphs, structured graph representations extracted from free-text LLM diagnostic traces using a domain-grounded ontology with 5 node types and 7 edge types. We apply this pipeline to 750 traces from five LLMs across 50 New England Journal of Medicine Clinicopathological Conference cases and three prompt conditions, and test whether diagnostic traces show stable structured reasoning patterns, or diagnostic schemas, for clinically similar cases. We operationalize this as higher graph similarity among clinically similar cases than among clinically dissimilar ones. Across 15 model-condition comparisons, within-cluster and between-cluster composite similarity are nearly equal, and no comparison survives multiple-testing correction; a component-level analysis finds any residual content signal far below schema scale. Graph similarity is also nearly identical for pairs of models that are both correct (0.488) and both incorrect (0.484), suggesting that graph structure captures a dimension not reflected in diagnostic accuracy. Structured reflection prompting increases explicit discriminating-feature analysis within traces (+33%) but does not increase cross-case consistency. These results show diagnostic competence without schema-scale reasoning consistency, and indicate that final-answer accuracy should be complemented by process-level evaluation. We release the ontology, extraction pipeline, validation protocol, and the extracted reasoning graphs and similarity artifacts as resources for structured evaluation of LLM clinical reasoning.

This paper presents a versatile framework for evaluating fuzzy quantification queries over both standard and fuzzy ontologies as well as knowledge graphs. The primary objective is the retrieval of individuals that satisfy queries articulated via Type I or Type II fuzzy quantified expressions. A key advantage of the proposed approach is its inherent adaptability: it remains entirely agnostic to the quantifier type, the underlying evaluation method, and the specific data source of the ontology (i.e., OWL ontologies or RDFS knowledge graphs). Furthermore, we present Q2S2, a publicly accessible implementation of this system developed to support future research.

In ontology-based data access (OBDA), multiple data sources are integrated via mappings to an ontology. We consider an OBDA setting based on existential rules and the certain answer semantics. We address the recent issue of query abstraction, which consists of abstracting data queries by translating them to the ontology layer. Since a perfect abstraction may not exist, the notions of minimally complete and maximally sound abstractions have been introduced. We study abstractions within an extension of UCQs with a limited form of inequality and a special predicate marking database constants. While this extension does not lead to an increased complexity of the problems of interest, it is able to express minimally complete abstractions, hence perfect abstractions when they exist. We also characterize maximally sound abstractions by making a new connection with the notion of maximum recovery stemming from data exchange.

ODRL policy evaluators produce verdicts, but say nothing about the normative positions a policy brings into existence, the authority structures those positions presuppose, or who holds the power to declare a norm violated. We formulate the Cross-Level Design Principle: any normative language with violable, consequential norms requires both conduct-level positions (Permission, Duty, Right, No right) and competence-level positions (Power, Subjection, Immunity, Disability). Applying this to ODRL, we establish that prohibition is sanctioned (violation possible and consequential), that permission is underspecified across its behaviour parameter (open vs. closed world), and that the formal semantics covers achievement obligations only. We ground ODRL in UFO-L, mapping each activated rule to a simple legal relator and extending coverage from two to eight legal positions; violation-declaration authority, implicit in every existing evaluator, becomes an explicit Power-Subjection pair. All axioms are mechanically verified in Isabelle/HOL and across a 39-problem benchmark under Vampire, E, and Z3.

Event ontology expansion aims to discover emerging event types from data and extend them to appropriate positions in the existing event ontology.. Existing methods typically cluster contextualized trigger representations and attach induced clusters to the ontology based on instance-level similarity. However, ontology expansion requires concept-level semantics that characterize event types, whereas contextualized trigger representations often conflate these semantics with surface contextual variation, leading to unstable clustering and unreliable hierarchy expansion. To address this issue, we propose ConceptE, a conceptualization-enhanced framework for event ontology expansion. ConceptE first derives concept-level semantics by prompting an LLM with the sentence and event trigger, producing a concise concept name and a natural-language description. It then jointly encodes these semantics with trigger information to build concept-enhanced representations aligned with ontology-level reasoning. This representation design supports more coherent event clustering, more reliable hierarchy expansion, and ontology-consistent type naming. Experiments on ACE, ERE, and MAVEN demonstrate that ConceptE consistently outperforms state-of-the-art approaches across all subtasks of event ontology expansion. In particular, it achieves improvements of up to 12.37% in BCubed-F1 for event clustering and 6.48% in Taxo_F1 for hierarchy expansion, demonstrating the effectiveness of the proposed ConceptE method.

Untranslatability, cases where meaning cannot be directly preserved across languages, is well-studied in linguistics but underexplored in NLP. As machine translation (MT) systems improve on standard benchmarks, their limitations increasingly concentrate in such cases, where translation cannot be reduced to one-to-one equivalence. We introduce a structured ontology of untranslatability along with a taxonomy of compensation strategies, which are specific techniques to convey meaning under these untranslatable circumstances. We operationalize this framework into a multilingual dataset of untranslatable sentences paired with strategy-based translations, enabling controlled analysis of translation behavior. Initial human preference studies suggest that translation quality depends on the strategy used, with consistent preferences for outputs that include explanatory context, known as the Annotation compensation strategy. Our framework and dataset provide a foundation for studying and modeling strategy-informed machine translation.

AI pluralism is often framed as a problem of representing diverse values, preferences, users, or outputs. This paper argues that this framing is incomplete because AI systems also impose ontologies: they define what counts as an entity, relation, feature, harm, benefit, and valid form of evidence. We define ontological flattening as the conversion of situated, contested, and historically specific meanings into a restricted technical category, proxy, aggregation rule, or benchmark target that is treated as neutral and difficult to contest. The paper develops a bounded conceptual and qualitative synthesis across value pluralism, pluralistic alignment, participatory and democratic AI, procedural justice, science and technology studies, accountability research, aggregate themes from 11 expert interviews, and three urban AI companion cases. The cases illustrate how pluralistic methods can improve or structure model behavior while still compressing categories, proxies, aggregation rules, and revision rights before affected actors have procedural standing. We introduce Pluralistic Lifecycle Governance (PLG) as a preliminary qualitative audit scaffold for documenting ontological openness, epistemic inclusion, procedural authority, evaluation pluralism, and lifecycle accountability. PLG is not presented as a validated scoring instrument; it is a framework for making the evidence and governance conditions of pluralistic AI explicit.

Ontologies are useful structures to organize and maintain information that can be understood both by humans and systems. However, since their manual crafting is a laborious task, many specific domains lack reference ontologies. The outstanding ability for understanding natural language demonstrated by the Large Language Models (LLMs) has motivated their application to aid on a variety of fields, including on ontology development. This work presents the experimentation with a technique that uses LLMs in the role of domain experts to build conceptual hierarchies for a given initial concept. Twenty ontologies automatically constructed for the domain of the Brazilian maritime territory (a.k.a the Blue Amazon) using GPT-3.5 and GPT-4 were then evaluated by human experts. The models were able to construct overall coherent conceptualizations of the domain, but none of the outputs was completely satisfactory as a representation of the context without refinement.

Large language models have achieved impressive performance on reasoning tasks spanning mathematics, science, programming, and commonsense inference. Despite these advances, their reasoning processes remain largely latent, making them difficult to interpret, verify, replay, debug, and transfer across domains. Existing approaches such as chain-of-thought, tree-of-thoughts, graph-of-thoughts, and tool-augmented reasoning expose intermediate reasoning artifacts but typically lack explicit execution semantics, formal state representations, and verifiable reasoning structures. We introduce Theorem-Grounded Execution Ontologies (TGEO), a framework that models reasoning as an executable state-transition process rather than a sequence of generated tokens. Given an input problem, TGEO identifies relevant theorem families, binds the problem to a domain ontology, discovers semantic objects, instantiates states and operators, constructs predicates and contracts, and synthesizes an executable reasoning graph. The resulting graph provides an interpretable, replayable, and auditable representation of reasoning in which every state transition, operator application, and validation step is explicitly represented. TGEO integrates five architectural components: (1) theorem-grounded reasoning priors, (2) executable ontologies, (3) operator-mediated state transitions, (4) predicate and contract-based execution validation, and (5) architectural auditing and failure localization. We evaluate TGEO on theorem-intensive reasoning tasks derived from mathematical benchmark domains and a curated Golden Execution Suite. Our findings demonstrate the value of executable reasoning representations for interpretable, verifiable, and reproducible AI reasoning systems.

The Materials Science and Engineering ontology landscape is fragmented along multiple axes simultaneously. Horizontally: a recent survey identified 94 ontologies of which over 40 are structurally incompatible; each new application domain -- ceramics, polymers, batteries, smart materials -- typically restarts ontology design from scratch. Vertically: EU regulation (CSRD, CSDDD, PPWR, CBAM, R2R, AI Act, ESPR) forces material, manufacturing, supply-chain, and lifecycle data into integrated digital product passports, leaving ontologies that only address horizontal fragmentation incomplete for any contemporary consumer. And mechanistically: a vocabulary that records that BNT-BT has $d_{33} \approx 580$ pC/N stores a fact but cannot surface why -- Bi-6s$^2$ lone-pair stereo-activity, anomalous Born effective charges, soft modes, defect chemistry -- without a systematic explanation skeleton. We propose a multi-level modular architecture with two independent classification axes -- level of abstraction (L0 bridges, L1 material-agnostic laboratory-notebook, L2 material-class-specific, L3 categorical reasoning) and consumer audience (material vs. compliance) -- in which the material-specific level is internally organised by a seven-tier mechanistic-explanation skeleton (Symmetry, Energy/DFT, Thermo/CALPHAD, Kinetics, Microstructure, Defect chemistry, Bonding) applicable to any crystalline ionic oxide. The level-and-audience modularity dissolves the horizontal fragmentation, the compliance audience absorbs the vertical regulation pressure, and the seven-tier organisation of Level 2 delivers the mechanistic explanation depth. We instantiate the architecture as the OntoCrafter Ceramics Ontology (OCO v0.94): 5,196 classes across 44 modules; 167,348 OWL axioms (40,454 logical); 1,674 properties; 829 cross-ontology bridge mappings; 1,172 SHACL shapes; 163 published competency questions.

Automatic speech recognition (ASR) correction has traditionally focused on isolated utterances or short local contexts. However, as text and speech become increasingly interleaved in long interactions, ASR correction requires conversation-level contextual evidence. Existing ASR correction methods often rely on the current hypothesis or concatenate raw dialogue history. In such contexts, sparse correction evidence can be difficult to locate amid redundancy and noise. Addressing these challenges, we propose an ontology memory-augmented ASR correction framework for long text-speech interleaved conversations. The framework organizes preceding interaction history into a dynamically updatable ontology memory, where entities, terminology, surface variants, potential ASR confusions, and semantic relations are stored as retrievable nodes for context-grounded correction. To evaluate this setting, we construct RAMC-Corr, a dataset derived from MAGIC-RAMC for long-range ASR correction with grounded context. Experiments on RAMC-Corr show that our method improves over direct correction in 9 out of 10 paired backbone-setting combinations and encourages more selective and evidence-grounded corrections for context-dependent ASR errors.