Trees

Speculative sampling accelerates diffusion model generation by drafting inexpensive candidate states and correcting them under a coupling that preserves the target distribution exactly, reducing the number of expensive target evaluations. Existing diffusion samplers, notably those based on reflection maximal coupling, are topologically constrained: their lookahead drafts form a chain graph, a single linear sequence, which inherently limits the acceptance rate per target evaluation. We connect speculative sampling in diffusion models to relative entropy coding (REC). This perspective shows the lookahead need not be linear and motivates our central contribution, draft trees, which enrich the candidates considered per round and lower the target function evaluations. We further adopt greedy rejection sampling, an REC algorithm, as the draft-target coupling, improving acceptance while guaranteeing exact target samples. Experiments across diverse target and draft models demonstrate up to 8.3% acceleration over the reflection coupling baseline in practical settings.

Tree species recognition supports forest inventory and biodiversity monitoring but still depends on scarce taxonomic expertise. Bark is visible year-round at ground level, yet bark recognition has concentrated on temperate floras and on large ImageNet-pre-trained backbones. We address both gaps. First, we release BarkBD, a bark dataset for Bangladesh: 14,258 uncropped smartphone photographs of 20 native species across four districts and three weather conditions, with a fixed stratified split. Second, we propose BarkNet-Lite, a 2.96M-parameter network trained from random initialisation, pairing a multi-scale texture pathway with a parallel colour-aware pathway. Over five seeds it reaches 96.64+-0.66%accuracyunderstrict single-image inference, within 2.3 points of nine ImageNet-pre-trained backbones fine-tuned under an identical protocol and within one seed-level standard deviation of the smallest ofthem, andtransfers to public benchmarks (95.86% on BarkVN-50, 92.85% on BarkNet 1.0). Grad-CAM, validated by faithfulness and weight-randomisation checks, confirms its decisions rest on bark structure rather than background. The exported single-precision model classifies one photograph in 15.34ms on a commodity smartphone.

We map tree species across Denmark using National Forest Inventory plots and EO data, while evaluating the potential of foundation models for large-scale forest characterization. We compare two alternative input representations for tree species classification: (i) manually engineered spectral-temporal features (STF) derived from multi-temporal Sentinel-1 and Sentinel-2 observations, and (ii) embeddings generated by the EO FMs TESSERA and AlphaEarth. Both representations are complemented with canopy height information. Random forest, XGBoost, and Multi-Layer Perceptron (MLP) classifiers are evaluated for all input representations, with separate assessments for pure and mixed forest stands. The STF-based MLP achieves the highest classification performance, yielding macro F1 scores of 0.843 and 0.653 for pure and mixed stands, respectively. The MLP trained on TESSERA embeddings delivers competitive performance for pure stands, achieving results within 1.1 percentage points of the best-performing model. TESSERA consistently outperforms STF-based models when fewer than approximately 25% of training plots are available, demonstrating a substantial advantage under limited training data. Multi-year observations systematically improve classification accuracy relative to single-year inputs, while ablation experiments reveal the complementary contributions of Sentinel-1 backscatter, spectral indices, and canopy height data. The best-performing model is subsequently applied at the national scale to generate a 10 m tree species map of Denmark. Area-adjusted validation indicates an overall map accuracy of 79.9%. The resulting map, released as an open-access product, is the first high-resolution national tree species map of Denmark and provides a valuable resource for forest monitoring, ecological research, and land management applications.

Retrieval-Augmented Generation (RAG) has made dense retrieval over large document collections a standard building block. Organizations increasingly outsource vector indexes to untrusted clouds, exposing proprietary corpora and user queries. Cryptographic protection is challenging because each query searches corpus-scale state, causing computation, correlated randomness, and communication to grow with the corpus. At million-document scale, a naive secure implementation takes minutes and about 90 GB of communication per query. Even recent optimized systems require 10--22 seconds. We propose Spruce (Scalable Private Outsourced Retrieval Using Compact Embeddings), which co-designs representations with the cryptographic protocol. Spruce learns compact binary codes that preserve candidates for full-precision reranking, replacing corpus-wide embedding scoring with efficient Hamming-distance computation under two-server multi-party computation (MPC). A corpus-calibrated fixed-radius protocol avoids multi-round candidate selection while preserving retrieval quality. Spruce also provides private cluster pruning, which trades minor quality loss for substantially less computation, and a one-core owner-operated dealer that removes cloud OT preprocessing bottlenecks. Across four corpora containing 383K--5.42M documents, Spruce preserves the original search quality with median candidate sets of only 382--1,952. At 10 Gbps inter-server bandwidth, full scans take 0.21--2.97 seconds, $4.8$--$6.7\times$ faster than the closest measured prior work. Private pruning takes 0.06--1.09 seconds, achieves $13.1$--$22.9\times$ speedups, and retains $93.9\%$--$97.3\%$ of full-float NDCG. On the largest corpus, pruning and the dealer jointly improve sustained throughput by $31.5\times$ at 1 Gbps per link.

Recursive LLM agents can broaden their search by spawning specialists. Some branches later request tools that send data or deploy code. When should a branch receive authority to act? We distinguish sandbox spawning, in which external controls prevent the specified harm, from capability activation, in which a selected branch crosses an irreversible-action boundary. Progressive Risk Vesting (PRV) holds a trajectory-level risk budget in escrow and debits it as branches are activated. We prove an anytime harm bound for adaptively generated trees. Branch outcomes may be dependent, but each local certificate needs to remain valid conditional on the full pre-activation history, including the information used to select the request. When activation gates, branch charges, and compute constraints are held fixed, delayed vesting preserves every policy available under irrevocable spawn charging. Marginal risk estimates can still fail after branch selection. In a stylized branching model, trajectory harm changes as the authority reproduction number $\mathcal{R}_A$ crosses one. As local risk $p$ approaches zero, trajectory harm is proportional to $p$ below criticality, proportional to $\sqrt{p}$ at criticality, and retains a positive floor above it. A finite-type occupancy model yields risk and compute shadow prices. For nested fanout modes with decreasing marginal value per unit risk, these prices produce a threshold rule. Branching calculations and a split-sample experiment illustrate the results. These synthetic studies do not estimate safety in deployed agents. The analysis suggests a design rule: search broadly in the sandbox and grant recursive authority sparingly, with an explicit risk charge.

Tensor networks, originally developed for quantum many-body physics, are promising models for machine learning. We derive stochastic Riemannian optimizers for tree tensor networks (TTNs) on both their parameter and quotient manifolds, including adaptive and learning-rate-free schemes suitable for minibatch training. Using a hybrid CNN-TTN architecture, we evaluate the methods on Fashion-MNIST, CIFAR10, and Imagenette. The proposed optimizers achieve predictive performance comparable to unconstrained optimization while enabling numerically stable downstream compression.

Accurate daily predictions of cold hardiness in woody plants are critical in regions where freezing temperatures can damage dormant buds and reduce seasonal yield. Existing biophysical, hybrid, and deep learning models have shown high predictive accuracy when trained on local data but remain largely site-specific. The limited availability of cold hardiness data, coupled with the lack of principled methods for transferring cold hardiness predictions to new regions and cultivars, has limited the broader adoption and practical utility of these approaches, particularly in data-scarce regions. To address these limitations, we propose a cold hardiness prediction framework that learns a transferable latent representation by capturing region-specific variation through learned embeddings. To enable prediction in previously unseen regions, we infer embeddings from (1) text descriptions of the cultivar and growing region, and (2) limited historical observations, supporting both zero-shot and few-shot transfer. Experiments on datasets from six regions across North America demonstrate that our approach consistently outperforms state-of-the-art cold hardiness prediction methods, yielding more accurate predictions and substantially improving transfer to data-scarce regions.

Chemistry questions often demand exact computation and database lookups that a language model cannot supply from its parameters, so it must reach for external tools. Tool use here is a three-part problem: select the right tool from a large pool, fill it with correctly typed arguments, and chain calls so that each consumes the outputs of the last. CheMatAgent, a previously published system, addresses this with hierarchical evolutionary MCTS: separate policy and execution models searching tool-call trees under two learned critics, one regressed partly onto GPT-assigned scores. We show that a single policy suffices. Our model interleaves reasoning, tool calls, and returns in one left-to-right generation, trained by a supervised warm-up and then outcome-level reinforcement learning against a programmatic reward read directly off the gold call chain, which leaves no learned critic and no judge in the training loop. On ChemToolBench multiple-tool comprehensive chemistry, on both backbones CheMatAgent use, we improve Tool F1 by 5.5% and Return F1 by 9.6% on Qwen-2.5-7B, and by 3.7% and 3.9% on Llama-3.1-8B, compared with their strongest search configuration, at one model invocation per question, against a search whose cost grows with the tree; we also lead answer Pass Rate on Qwen-2.5-7B.

Individual tree measurements derived from Light Detection and Ranging (LiDAR) mounted on Unmanned Aerial Vehicles (UAV) provide valuable information for forest inventory, ecosystem monitoring, and sustainable forest management. Recent advancements in machine learning have increased the demand for annotated datasets to develop and evaluate point cloud-based approaches, especially for individual tree segmentation. However, publicly available annotated UAV-LiDAR datasets in temperate forests are limited. In this article, we present CedarCypress3D, a manually annotated UAV-LiDAR dataset collected in Japanese cedar (Cryptomeria japonica) and Japanese cypress (Chamaecyparis obtusa) plantations in Japan. The dataset consists of UAV-LiDAR point clouds and field survey measurements from 34 circular plots across two sites with different topographic characteristics, along with terrestrial LiDAR point clouds available for a subset of 22 plots. A total of 1,627 trees were measured in the census field survey and manually annotated to match the corresponding trees in the UAV-LiDAR point clouds. For the subset of plots with terrestrial LiDAR data, semantic labels (i.e., stem and non-stem) were additionally assigned to tree points in the UAV-LiDAR data. CedarCypress3D provides high-quality annotated UAV-LiDAR data for developing and evaluating individual tree instance segmentation and semantic segmentation methods in temperate planted forests. The dataset can also support research on tree attribute prediction and multi-platform LiDAR analysis. The dataset is publicly available at https://doi.org/10.5281/zenodo.22168721.

Timely urban-canopy information is essential for linking remote sensing with heat, mobility, and neighborhood planning. We developed an optical GeoAI workflow for Davis, California, using 2022 National Agriculture Imagery Program imagery (0.6 m RGB+NIR). DeepForest generated crown candidates; an NDVI threshold, non-maximum suppression, and box-prompted Segment Anything Model (ViT-B) produced a crown-anchored canopy surface. Analyses used the 25.92 km2 Census TIGER municipal boundary and a 100 m grid. The workflow retained 11,741 candidate crowns and mapped 7.71 km2 of canopy (29.8% of the city). On the identical extent, pixel precision was 0.804, pixel recall was 0.873, and 97.4% of candidate centers agreed with the 2022 USDA/CAL FIRE LiDAR-assisted canopy product (IoU 0.719; Dice 0.837; area recovery 108.5%). Approximately 49% of candidates occurred within 15 m of a road. Canopy was inversely associated with Landsat land-surface temperature (Spearman rho = -0.477; partial rho = -0.551 controlling for built probability), and spatial-lag modeling confirmed clear neighborhood structure. Two transparent attention surfaces combined canopy need with thermal and contextual indicators. The framework provides a reproducible, updateable screening layer that complements structural canopy products and municipal inventories while retaining assumptions, data provenance, and spatial diagnostics for planning interpretation.

Speculative decoding losslessly accelerates autoregressive language models by verifying multiple draft tokens in parallel. Diffusion-based drafters further reduce proposal latency by predicting an entire token block in parallel, but their position-wise distributions are marginal rather than conditioned on tokens selected along each draft path. Existing recurrent correction incorporates causal information along a single draft chain, whereas diffusion-based tree construction broadens candidate coverage without carrying this correction along individual branches. We introduce DARTree, a training-free speculative decoding method that extends a pretrained AR correction head from chains to trees. DARTree first constructs a fixed-width candidate tree by expanding and scoring all nodes at each depth in a single batch, and then only applies best-first pruning to select the verification tree, decoupling AR-head inference from sequential heap operations. Across seven math, code, and chat benchmarks, DARTree achieves the highest average acceptance length and speedup in all four model--temperature configurations, accepting up to 12.97 tokens per verification round, 98.6% more than DFlash and 27.9% more than Domino in the same setting, and reaching up to 9.73$\times$ lossless speedup over locally measured autoregressive decoding.

Rapid urbanization in Dhaka District, Bangladesh has triggered substantial alterations in land use and environmental conditions, necessitating systematic monitoring for informed urban planning and ecological sustainability. This study employs remote sensing data and machine learning techniques to analyze spatiotemporal changes in land cover and vegetation dynamics between 2019 and 2024. High-resolution satellite imagery from Sentinel-2 MSI and Landsat 8 was utilized to classify land cover types and compute spectral indices including the Normalized Difference Vegetation Index (NDVI), Normalized Difference Built-up Index (NDBI), and Normalized Difference Water Index (NDWI). A supervised machine learning approach incorporating Decision Tree, K-Nearest Neighbors (KNN), and Random Forest classifiers was applied using labeled geospatial training points within Google Earth Engine. Accuracy assessments were conducted using confusion matrices and kappa statistics. Results indicate a 59.5% increase in urban built-up areas and a significant decline in vegetation (-8.46%) and water bodies (-7.77%) over the five-year period. Land conversion from vegetated and aquatic areas to urban infrastructure was identified as a dominant trend. Among the models, Random Forest demonstrated the highest classification accuracy. These findings underscore the growing environmental pressures driven by unregulated urban expansion in Dhaka. The study highlights the potential of remote sensing and machine learning tools in providing timely, actionable data to support sustainable urban development, land-use regulation, and ecosystem conservation policies.

Cashew production is a widespread economic activity in Guinea-Bissau, as well as other countries in West Africa. However, unregulated cashew production can be directly associated with increasing regionwide deforestation rates, biodiversity losses, and a fragile economic structure. There is no nationwide database for listing or georeferencing cashew orchards, so there is a clear need to remotely map their locations. In recent years, multiple methods for detecting orchards have been developed, though they have only been applied on a regional level. This work expands regional analyses to a nationwide scale. It develops a scalable and cost-effective remote approach, based on Sentinel-2 satellite imagery, using Machine Learning techniques to detect cashew orchards automatically. Margin-based Active Learning techniques were employed to develop an optimal training set in terms of the number of points and their informativeness, leading to a cashew map with 94.0% balanced accuracy obtained entirely off-site. We created two datasets and a 2021 cashew map with 10m spatial resolution that are openly accessible through GitHub. The results demonstrate the possibility of a broader cashew orchard mapping, creating a new stepping stone for this environmental application.

Chain of Thought (CoT) lifts the expressive ceiling of bounded-depth Transformers, with characterizations tying the number of CoT steps to circuit complexity classes. What remains largely missing are concrete instantiations with explicit, depth-bounded constructions, and the traversal procedures such characterizations presuppose. We close this gap for branching complexity. We give CoT realizations of depth-first search (DFS) and of Dijkstra algorithm, the latter subsuming breadth-first search, by unique hard-attention decoders of at most two layers, and use them as a shared computational substrate: reusing the DFS decoder yields the Strahler number of an $n$-vertex tree in $2n-1$ steps with four layers, and reusing the Dijkstra decoder yields its width in $n-1$ steps with three. Since computing the Strahler number of a binary tree given as a term is \textsf{NC\textsuperscript{1}}-complete, and our constructions handle arbitrary $n$-ary trees without layer normalization or positional encodings, this is a non-trivial witness for the linear-step regime of the CoT hierarchy. Exploiting the classical bijection between ordered trees and Dyck paths, itself realized by our DFS construction, which emits the path as it traverses, we give independent constructions for both measures on the path representation.

Spatially continuous quantification of forest above-ground biomass (AGB) is what makes carbon accounting credible and mitigation strategies actionable. While field inventories provide high localized accuracy, they are spatially sparse; conversely, spaceborne LiDAR from the Global Ecosystem Dynamics Investigation (GEDI) offers broad biomass samples but lacks spatial continuity and systematic underestimation of high-biomass forests. This paper presents an operational framework centered on a single globally trained convolutional neural network (CNN) that is seamlessly adapted to each new landscape through a lightweight empirical field-calibration workflow. The global model combines optical (Sentinel-2), C-band SAR (Sentinel-1), L-band SAR (ALOS-2 PALSAR-2), and terrain (DEM) data. It is trained once against GEDI Level-4A biomass reference data spanning multiple regions and both wet and dry seasons so that it learns the persistent woody-structure rather than a single-date appearance. To avoid retraining for every landscape, the framework applies a small number of local field plots to fit a scale-and-bias correction that aligns the global prediction with ground truth in each region. The pipeline harmonizes sensor data onto a shared 10 m grid, derives vegetation indices and polarimetric ratios, computes per-band normalization stats, and trains the CNN with a hybrid log-domain SmoothL1 with RMSE loss for skewed biomass distribution. On held-out validation the global GEDI-based model achieved R^2 approximately 0.78 and RMSE approximately 22 Mg/ha. A subsequent field calibration combining Random Forest fine-tuning under a 10-fold cross-validation eliminates localized regional biases. This improves local validation performance to R^2 approximately 0.82 and reduces RMSE to approximately 15 Mg/ha, outperforming both the uncalibrated global model and the ESA CCI Biomass product against field plots.

Precision nitrogen (N) management (PNM) for cotton requires in-season monitoring of crop growth parameters and N status indicators to decide fertilizer timing, placement, and application rates for optimal canopy development and yield. This study developed remote sensing and machine learning-based methods to estimate cotton dry biomass weight (DBW), plant N uptake (PNU), plant N concentration (PNC), critical N dilution (Nc), and nitrogen nutrition index (NNI) to support PNM. To achieve this, a three-year field-based N-management study was conducted and unmanned aerial vehicle (UAV)-based multispectral images were acquired between early vegetative growth and flowering stages, critical for fertilizer applications. Spatiotemporally consistent spectral and morphological plant features, including plant height (PH) and fractional canopy cover (FCC), provided reliable model training inputs. DBW, PNU, and PNC estimates from simple regression using vegetation indices (VIs), multiple linear regression (MLR) combining VIs, PH, and FCC, and decision-tree models, random forest regression (RFR) and extreme gradient boosting (XGB), combining spectral reflectance, PH, and FCC were evaluated using trial-held-out (THO) and leave-one-year-out (LOYO) validation methods. The best validation accuracies were from RFRTHO (R2 = 0.88 and MAPE = 23.14% for DBW; R2 = 0.84 and MAPE = 20.61% for PNU; R2 = 0.85 and MAPE = 7.82% for PNC) and XGBTHO (R2 = 0.87 and MAPE = 21.91% for DBW; R2 = 0.81 and MAPE = 21.40% for PNU; R2 = 0.86 and MAPE = 7.66% for PNC). Nc was calculated from model estimated DBW and PNC for high-yielding, medium-to-tall cotton varieties grown in the Texas Coastal Plains and validated using ground-truth biomass measurements. NNI derived from XGBTHO outputs performed marginally better than NNI from RFRTHO in identifying N-deficient plots and multi-level N-stress categorization.

A skill is a naturallanguage document that steers a frozen agent whose weights cannot be updated so any capability the agent lacks must be supplied in prose Optimising a skill is therefore optimising text against a score and the standard recipe which keeps any edit that raises a heldout score is blind in a specific way a single score cannot tell a document perched on a narrow overfit spike from one resting on a broad plateau even though only the second can still be improved We introduce BONSAI a novel skilloptimisation framework that steers instead by evolvability the capacity of a region of documentspace to keep producing viable variation under further mutation a property biology treats as separate from present fitness BONSAI grows skills as a MonteCarlo search tree in which every child document is a mutation of its parent and descends it under an upperconfidence selection rule whose exploitation term blends a skills own fitness with the fitness of its mutational neighbourhood Because every child is a mutation the mean score recorded beneath a node estimates that neighbourhoods evolvability at no extra cost so the rule concentrates budget on regions that keep improving while its exploration term keeps a currently weak branch in contention BONSAI ships the single bestscoring document it finds at no cost beyond the acceptifbetter loop it replaces With a frozen 30B agent and averaged over three benchmarks BONSAI lifts heldout accuracy over the skillfree agent by 2313 points and improves on two budgetmatched baselines GEPA and SkillOpt by 387 and 397 points respectively

Accurate estimation of Above-Ground Biomass (AGB) from satellite imagery is essential for the large-scale monitoring of carbon stocks, yet it remains a challenging regression task at global scale. Geospatial Foundation Models (GFMs) have recently emerged as a promising machine learning paradigm to derive general-purpose representations from Earth observation data, but their utility for quantitative regression tasks like biomass estimation remains largely unexplored, as most benchmarks emphasize classification and segmentation. Here, we present a comprehensive benchmark of GFMs for global-scale AGB estimation using the AGBD dataset, a machine learning-ready benchmark spanning diverse biomes and geographies. We distinguish two ways in which GFMs reach practitioners: (i) models distributed as weights to be run by the user, which we evaluate as frozen encoders within the PANGAEA benchmarking framework; and (ii) models distributed as ready-to-use, pre-computed embedding products, for which we evaluate AlphaEarth Foundations (AEF) and TESSERA. We compare 11 GFMs available on PANGAEA and both embedding products against a fully supervised state-of-the-art (SOTA) model, assess their geographical and temporal generalization abilities, as well as agreement with the ESA CCI biomass product on independent reference data. Our results show that GFMs run as frozen encoders substantially underperform with respect to the supervised SOTA model, whereas pre-computed embedding products prove highly effective. An MLP trained on AEF embeddings outperforms the supervised SOTA model trained on AGBD features, and the same SOTA model trained on AEF embeddings (optionally augmented with selected raw features) achieves the best overall result, while also generalizing better across space and time.

The Rashomon effect describes the phenomenon that many models can achieve nearly equivalent performance on the same learning task, with significant ramifications for robustness, feature importance, and customizability. These use cases motivate the computation of Rashomon sets: the set of all models whose regularized loss is near-optimal. Decision trees are one of the few model classes for which Rashomon sets can be fully enumerated, but this computation has always been conditional on a binarization of the original data, either restricting which splits each tree is allowed to make or substantially increasing the complexity of an already difficult combinatorial problem. We introduce the first algorithm that exactly enumerates decision-tree Rashomon sets while exploiting the ordered structure of continuous features. We further develop a relaxation for approximate enumeration and an anytime algorithm that progressively refines the set of candidate thresholds, producing increasingly detailed approximations that converge to the continuous-feature Rashomon set. Experiments show that coarse binarization can miss many trees, important features, and predictive multiplicity; our algorithms achieve orders-of-magnitude speedups over existing enumeration methods, with approximations providing further speedups while maintaining near-perfect recall.

Speculative decoding accelerates LLM inference only when drafted continuations survive target-model verification. Semi-autoregressive drafters such as DSpark predict an entire token block with one backbone forward and refine it with a lightweight Markov head. However, DSpark decodes this block as a single chain, so an early mismatch invalidates the remaining suffix and limits the benefit of large draft blocks. We show that the conditional structure already learned by DSpark can support multiple parent-consistent continuations without retraining or additional backbone passes. We introduce Parent-Conditioned Drafting Tree (PCTree), which uses the pretrained Markov head to score alternative children separately for each concrete parent and allocates a fixed verification budget to the most probable paths. This converts DSpark's linear draft into a tree while preserving its one-pass parallel backbone. Across Qwen3-{4B,8B,14B} and nine benchmarks, at $B{=}7$, measured speedup gains over autoregressive (AR) decoding, relative to matched DSpark, range from $3.1\%$ to $29.5\%$. On Qwen3-4B GSM8K at $B{=}16$, PCTree increases mean acceptance length from $9.41$ to $11.16$ and three-run mean AR speedup from $6.14{\times}$ to $6.60{\times}$. These show that parent-conditioned branching can turn conditional capacity already present in a semi-autoregressive drafter into end-to-end inference gains through an inference-only change.

The beekeeping sector holds significant potential for livelihood diversification among the agropastoral communities in Kenya. Melliferous tree species play a critical role by providing essential nectar sources for bees. However, limited knowledge of their precise spatial distributions constrains the full development of beekeeping. One-class classification (OCC) offers a practical solution for detecting single target species without requiring extensive labeled data from other classes. Although existing OCC methods perform well in trained domains, the generalization capability to unseen domains remains limited due to domain shift. To address these challenges, this study proposes a hyperspectral unsupervised domain adaptation OCC framework (HyUDA-One) for tree species mapping using airborne hyperspectral imagery and laser scanning data. The spatial-spectral regularized pseudo-positive learning was designed to mitigate domain shift and improve model generalizability. The effectiveness of HyUDA-One was demonstrated by mapping three key melliferous tree species in two savanna landscapes in southern Kenya. The results show that HyUDA-One significantly improves performance in unlabeled domains. The F1-scores of 0.788, 0.845, and 0.768 were achieved for Senegalia mellifera, Vachellia tortilis, and Commiphora africana in the trained domain, respectively. In the untrained domain, the F1-scores of Senegalia mellifera and Vachellia tortilis were 0.756 and 0.884, respectively. The distribution maps revealed the spatial patterns of these melliferous tree species and the nectar source availability, offering an important reference for sustainable beekeeping development in savanna landscapes. Furthermore, the proposed framework can potentially be extended to other mapping applications, such as invasive species detection.

Accurate estimation of forest height from satellite imagery is essential for applications such as carbon accounting, biodiversity monitoring, and ecosystem management. While recent deep learning approaches provide accurate predictions, they typically do not quantify predictive uncertainty. This limitation is particularly relevant in geospatial settings characterized by sparse supervision and geographic distribution shift. In this work, we investigate Deep Evidential Regression (DER) for forest height estimation on the TreeUQ benchmark, a large-scale dataset designed for the joint estimation of tree count and average tree height at 10 m resolution, based on Sentinel-1/-2 data as well as tree inventory data over the federal state of Bavaria. To account for the extreme label sparsity of the tree inventory data, we introduce a masked evidential loss for dense geospatial prediction. Using a U-Net architecture with multimodal Sentinel-1 and Sentinel-2 inputs, the proposed approach jointly predicts tree height and associated uncertainty estimates in a single forward pass. Experimental results show that DER achieves predictive performance comparable to a deterministic U-Net while additionally providing well-calibrated uncertainty estimates. These findings demonstrate the potential of evidential learning as an efficient framework for uncertainty-aware forest structure estimation from Earth observation data.

Hybrid-attention large language models combine full attention with recurrent linear attention to reduce long-context inference costs, yet their autoregressive decoding remains memory-bound. Tree speculative decoding offers an attractive acceleration path, but existing tree-speculation systems are designed around the key--value caches of full-attention models. On hybrid models, they traverse recurrent layers branch by branch and materialize a full state for every proposal node, causing verification latency and transient memory to scale poorly with tree and batch sizes. We present Bole, a kernel--runtime co-design that enables efficient tree speculation for hybrid-attention LLMs. Bole transforms the linear-attention recurrence into a tree-structured closed form and realizes it with a resource-efficient GPU kernel, verifying all proposal nodes in parallel and accelerating linear-attention tree verification by 3.4--7.7$\times$. It losslessly encodes speculative state updates as token-level factors and reconstructs only the state selected after sampling, reducing transient state memory by 82--99$\times$ and freeing GPU capacity for KV caches. Its integration into SGLang, a widely deployed production LLM serving engine, couples efficient state management with a batch-wide verification budget calibrated to the complete hybrid forward. Across four models, two GPU platforms, and diverse datasets, Bole delivers up to $4.72\times$ the offline decode throughput of autoregressive decoding and up to $2.03\times$ that of the strongest tree-speculative baseline. Under online agent workloads, it reduces TTFT and TPOT by up to $67.6$ and $49.9$, respectively, over the strongest tree-speculative baseline.

Accurate 3D crop monitoring underpins data-driven precision agriculture by enabling field-scale analysis of plant structure, growth dynamics, and management response. Modern 3D reconstruction methods perform strongly on generic benchmarks, but rendered appearance may not translate into metrically and agronomically useful geometry in crop fields. We introduce UAV3DCrop, a public benchmark of repeated multi-angle unmanned aerial vehicle (UAV) crop surveys. It contains 88,830 RGB images at $5280 \times 3956$ pixels, with a ground sampling distance of 3.6-5.8 mm, from 91 scenes spanning corn, soybean, wheat, and oat. Track A evaluates seven scene-optimized methods -- Neural Radiance Field (NeRF) and 3D Gaussian Splatting (3DGS) variants -- on held-out views, photogrammetry-referenced depth, and canopy-height recovery. Track B tests four pretrained feed-forward models on zero-shot camera-pose and geometry estimation. The scene-optimized methods rank differently across the three targets: Splatfacto-big leads appearance, whereas Scaffold-GS leads depth and is statistically tied with Splatfacto for canopy height. Among feed-forward models, MapAnything leads on seven of the eight metrics, while the remaining models vary more across crops and fail severely on absolute scale in a way that alignment conceals. Repeated acquisitions reveal further sensitivities that differ by output type and by model, associated with position within the acquisition sequence and with tie-point multiplicity. Current 3D reconstruction methods are therefore not yet interchangeable for agronomic use: no single method wins on appearance, geometry, and canopy height at once, and only one of four feed-forward models recovers usable metric scale. The dataset is publicly available at https://link-dev.github.io/UAV3DCrop/

Accurate plant leaf modeling is fundamental to downstream tasks such as plant growth monitoring, and phenotyping for yield estimation. Autonomous robotic reconstruction for large-scale field deployment must address limitations on robot planning budget and computation resources while optimizing viewpoint utility for leaf surface reconstruction. Existing approaches either focus on rigid objects, point-cloud coverage or plant reconstruction without fully addressing the system limitations or exploiting task-driven point cloud utility. In this work, we study next-best-view (NBV) planning for leaf surface reconstruction under travel constraints. We develop a novel Centroid-based Information Gain (CIG) function that measures the spatial distribution of observed points relative to the centroid of the existing point cloud to compute viewpoint utility. We also develop a receding-horizon variant that reasons over future viewpoints. To benchmark our work, we use the LAST-STRAW [1] public dataset that includes point clouds of strawberry plants over different growth stages and compare our method with attention-driven NBV [2] that uses a visibility-based information gain approach. The proposed receding-horizon approach consistently reduces surface reconstruction error and improves geometric fidelity across multiple growth stages, especially under increased inter-leaf occlusion. Results demonstrate that our approach is able to visit viewpoints that reduce surface reconstruction error and improves reconstruc-tion accuracy as compared to the baseline by upto 10%.

Gradient-boosted trees dominate tabular machine learning, yet canonical correlation analysis has always relied on linear or neural encoders. We propose \textbf{TreeCCA}, the first method to train gradient-boosted tree ensembles end-to-end as CCA encoders, inheriting their plug-and-play reliability: no architecture design, familiar hyperparameters, and strong performance with defaults. The technical enabler is the Eckart-Young (EY) loss, which supplies closed-form per-sample gradients that slot directly into any standard GBT library (XGBoost, LightGBM) as a custom objective. TreeCCA is the first CCA method to combine nonlinear accuracy with native interpretability: every tree split selects one feature, so gain importances reveal which inputs drive cross-view correlation at no extra cost. We demonstrate these properties on synthetic benchmarks, where TreeCCA matches or exceeds Deep CCA (2.61 vs.\ 2.43 on Signed Power; 2.93 vs.\ 2.89 on Hermite), and on a sparse benchmark with zero linear cross-view covariance, where TreeCCA recovers the true support with $\text{Precision@}S = 1.00$ at $p=50$ while PMD finds no signal. On the UCI HAR sensor-fusion benchmark, TreeCCA achieves comparable accuracy to Deep CCA at $5\times$ lower cost, while XGBoost gain importances directly validate a physics-motivated hypothesis about the data --- an interpretation not readily available with neural encoders. Across five popular tabular multi-view datasets, TreeMCCA consistently matches or exceeds linear CCA in both nonlinear correlation extraction and downstream classification accuracy.

Distributional random forests replace mean-based CART splitting with criteria that compare the full conditional response distribution in candidate children. We implement and systematically study a family of such criteria inside a single honest-forest implementation: isotropic random-Fourier-feature maximum mean discrepancy (MMD), an anisotropic diagonal-bandwidth variant, an adaptive per-split frequency-selection variant, and a non-kernel sliced-Wasserstein criterion, together with post-hoc kernel-mean shrinkage of the forest weights. Using paired-seed comparisons across synthetic quantile mechanisms, real univariate benchmarks, a California-housing subsample curve, and multivariate synthetic and real responses, we characterize where each extension pays. Three findings recur. First, among distributional criteria ordinary isotropic MMD is already close to best in class: the anisotropic, adaptive-frequency, and sliced-Wasserstein extensions, and post-hoc shrinkage, do not systematically improve on it. Second, on scalar tabular regression mean-based CART splitting remains the robust default and wins many cells. Third, multivariate responses are the regime where distributional splitting clearly earns its keep, most sharply on a pure-dependence copula where the energy score separates the criteria even though marginal CRPS does not. The evidence supports a simple allocation story: distributional splitting helps only when non-location structure is both present and estimable; otherwise it dilutes split-selection power away from the mean. All criteria, the honest forest, and the paired-comparison harness are implemented in the open-source \texttt{drforest} library, whose Rust-backed split search makes broad criterion sweeps inexpensive.

In this paper, we propose a method for predicting bone volume fraction (BVF) and fracture position by constructing a random forest model based on multichannel S-parameters. A nine-antenna microwave scanning system is designed and fabricated to acquire the multichannel S-parameter data. Bone-mimicking phantoms are developed, and corresponding experiments are conducted to validate the effectiveness of the proposed approach. Both synthetic and experimental results demonstrate the validity of the method.

Accurate tree-level forest monitoring using laser scanning data requires reliable tree delineation, consistent tree correspondence across multitemporal point clouds, and accurate estimation of tree attributes and their change. Reconstructing tree growth in boreal forests is challenging due to the scarcity of historical stem-level data, propagation of errors from older sensors into change estimation, and growth rates with a magnitude of measurement uncertainty. This study investigates a framework for estimating individual tree diameter at breast height (DBH) and stem volume growth using 136 point clouds acquired between 2014--2025 with 11 scanners on airborne (ALS), mobile (MLS), and terrestrial laser scanning (TLS) platforms across boreal forest test sites. Trees were delineated from an MLS point cloud using deep learning-based segmentation which was transferred to the remaining point clouds, resulting in reliable multitemporal tree correspondence. Stem curves were derived from MLS/TLS data, with ALS data used for height estimation, enabling DBH and volume estimation and time series. A height growth-based scaling model was used to reconstruct stem attributes across time and estimate growth. Results showed that modeled growth achieved higher agreement with manual growth estimates than differencing independently estimated attributes from point clouds. The modeled-manual 5- and 10-year growth RMSEs were 55--111% and 26--67% for DBH, and 31--87% and 21--67% for volume, respectively, depending on plot difficulty. The scaling model was temporally robust, with errors remaining stable or stabilizing after 5--6 years, reaching maximum RMSEs of 8--12% for DBH and 12--23% for volume after 12 years. Combining MLS/TLS-derived stem measurements with multitemporal ALS-derived heights provided a robust framework for individual tree growth estimation without requiring multiple under-canopy scans.

We prove function-theoretic analogues of a quantitative result of Hodges on extracting the order property from a sufficiently large 2-tree coded in a binary relation. Similar analogues for functions were previously obtained by Daskalakis and Golowich and by Anderson and Benedikt. These results are from statistical learning theory, where 2-trees are captured by sequential fat-shattering dimension, and the order property is controlled by various notions of "thresholds". Our first main result (Theorem 1.11) focuses on extracting a less restrictive kind of threshold from a tree, and yields significantly better bounds compared to what can be obtained from earlier results focusing on more restrictive versions. Part of the motivation for Theorem 1.11 lies in a companion paper, where this theorem is used to obtain efficient bounds in quantitative regularity lemmas for "stable functions". Here will use Theorem 1.11 to reprove a result of Anderson and Benedikt in a stronger form and with improved bounds. We also use Theorem 1.11 to prove an at most double-exponential bound on dual sequential fat-shattering, which resolves an open problem. In our second main result (Theorem 1.14), we give a new proof of a result of Daskalakis and Golowich on extracting "tight thresholds" from large sequential fat-shattering dimension, with improved bounds. This resolves another open problem related to correcting the proof of a result claimed by Jung, Kim, and Tewari.

Accurate forest inventory and large-scale mapping are essential for ecosystem monitoring and sustainable forest management. Multiple low-cost edge platforms enable efficient large-area data acquisition, but merging independently constructed local maps in GNSS-denied understory environments still requires initialization-free loop closure detection and global registration. This task is challenging because low-cost LiDAR point clouds are sparse and noisy, while repetitive trunk layouts and the lack of distinctive geometric landmarks lead to severe perceptual aliasing and false correspondences. To address these issues, we propose DTIF (Delaunay Triangulation in Forests), a lightweight trunk-topology-based framework for forest loop closure detection and global registration. Tree trunks are first extracted as stable landmarks and encoded using a Delaunay topology for compact scene representation. Candidate submaps are then screened using edge-length and radius statistics, followed by edge--radius consistency verification and strong/weak vertex support aggregation to construct weighted vertex correspondences. Finally, topology-derived reliability weights are incorporated into a decoupled robust pose estimator that separately estimates yaw, horizontal translation, and elevation translation under gravity alignment. Experiments on simulated and real-world forest datasets demonstrate that DTIF achieves accurate registration with low computational overhead, providing a favorable balance among robustness, efficiency, and deployability on resource-constrained edge platforms.

Grounded long-video question answering (Grounded LVQA) requires answering a question about a long video while localizing the short evidence interval that supports the answer. Recent agentic methods frame this task as multi-turn exploration with a single crop_video(start, end) action, which supports coarse-to-fine narrowing but provides no primitive for fine-to-coarse backtracking. As a result, these agents typically converge prematurely and cannot recover from an early mistake. We propose VideoTreeSearch (VTS), a framework that casts grounded LVQA as iterative self-correcting search over an adaptive temporal tree. VTS constructs a non-uniform tree from visual scene boundaries so that each node corresponds to a semantically coherent segment, and trains an agent to navigate the tree through four discrete operations: zoom_in, zoom_out, shift, and answer. These operations expose backtracking and recovery as explicit, learnable primitives rather than implicit behaviors. To train this navigation, we introduce a trajectory synthesis pipeline that produces multi-step paths through the tree, including deliberate detours into incorrect branches followed by recovery. We use these trajectories for supervised fine-tuning, followed by reinforcement learning with grounding and answer-accuracy rewards. On three Grounded LVQA benchmarks (CG-Bench, Haystack-LVBench, Haystack-Ego4D), VTS outperforms the strongest prior agentic methods by +12.5 mIoU on CG-Bench and +7.4 T-F1 on Haystack-Ego4D. The learned policy also transfers to general long-video QA, surpassing all prior agentic baselines on Video-MME, MLVU, and LVBench by up to +7.1 accuracy points. Ablations confirm that self-correcting hierarchical search is the central mechanism behind these gains: removing either adaptive descent or explicit backtracking substantially degrades performance. Code is available at https://github.com/CeeZh/VTS.

We introduce a novel mathematical framework for analyzing and generating complex tree-shaped 3D objects, such as botanical trees and plants, which deform both in their 3D geometry and branching structure. Unlike previous works, which either consider only the skeletal structure of tree-like objects or approximate their 3D geometry using branch thickness, the proposed framework accurately models both the 3D geometry of the tree branches and the way they are interconnected. In this paper, we first generalize the Square Root Normal Fields (SRNF) representation, originally proposed for the statistical analysis of genus-0 surfaces, to tree-shaped 3D objects. We then treat tree-shaped 3D objects as points on a novel Riemannian tree-shape space equipped with a novel Riemannian metric that measures the amount of surface bending and stretching, and structural changes one needs to apply to one 3D tree-shape to align it with another. This way, deformations become trajectories in this novel tree-shape space. We analyze the theoretical properties of this novel tree-shape space and the corresponding metric and develop algorithms for computing point-wise and branch-wise correspondences and geodesic paths between complex 3D trees. We finally show how to use these building blocks for (1) computing statistical summaries, \ie means and modes of variation, of collections of tree-shaped 3D objects, and (2) synthesizing novel tree-shaped 3D objects by sampling from probability distributions fitted to a population of tree-shaped 3D objects. We demonstrate the performance and utility of the proposed framework on real and synthetic plants and botanical trees and show that it significantly outperforms the state-of-the-art.

Consider the following variation on the Hierarchical Clustering problem: Usually, while building a hierarchical clustering, one recursively partitions the data until each cluster becomes a singleton. We relax the halting condition of the recursive process to stop whenever the remaining cluster is a graph belonging to a class $\mathcal{F}$. We call this problem Hierarchical $\mathcal{F}$-Clustering and we measure the quality of any solution using adapted Dasgupta's clustering objective. We study two natural choices of $\mathcal{F}$: trees and graphs of bounded diameter. We present the first polynomial time $\mathcal{O}(\log n\cdot\log\log n)$ and $\mathcal{O}(\log n)$-approximation algorithms for clustering into trees and bounded diameter graphs respectively. Our main technical contribution is a framework for approximating such problems based on linear programming. In fact, we characterize graphs classes $\mathcal{F}$ for which our approach can be applied and show that it includes both trees and bounded diameter graphs. However, our ideas are not limited to them and might be useful for other structures as well. Broadly speaking, our framework applies whenever the corresponding flat clustering problem, which we call $p_{\mathcal{F}}$-Partitioning, admits a natural ILP formulation together with a rounding procedure with provable approximation guarantees. Intuitively, given a set of vertices called terminals, the problem is to find an edge set whose removal results in satisfying certain vertex-dependent structural predicate for each terminal. We then use these ingredients to build clustering trees with the aforementioned approximation guarantees. To complement these results, we show that both Hierarchical Clustering into trees and into bounded diameter graphs cannot be approximated within any constant factor under the Small Set Expansion Hypothesis.

We present NEEDL-Bench, a microscopy detection benchmark for Swiss Needle Cast (SNC), a fungal disease of Douglas-fir trees. Douglas-fir is a keystone species of major ecological and economic importance as a softwood timber resource, and SNC affects productivity by forming sexual reproductive structures (pseudothecia) that emerge through the gas exchange pores (stomata) of the needles, thereby blocking gas exchange and compromising needle function. To date, there is no dataset for automatic computer vision detection of these structures, despite computer vision being well poised to standardize and viably scale severity measurements. To address this, we present NEEDL-Bench, a dataset of 3250 annotated images from 1082 Douglas-fir needles, annotated for both keypoints and bounding-box detectors. This dataset exhibits a challenging collection of features, including blur, poor object contrast, small objects of interest, and occlusions. To better capture both the nominal distribution of the data and the full breadth of rare structures, we present two distinct evaluation splits: either random sampling from the collected images or sequential sampling to maximize structural diversity. We evaluate multiple popular keypoint and bounding box methods for detection on this dataset as a baseline and observe a maximum F1 score of 0.8479, suggesting significant potential for gains from future development on this problem. Further, we find that larger models generally do not show commensurate gains in performance on this dataset, indicating that improvements on this problem will not come from scaling laws but rather from domain-specific inductive biases.

Earth Observation regression tasks such as building height, canopy height, and above-ground biomass estimation underpin critical applications in urban planning, forest monitoring, and climate policy, where both accuracy and reliability are critical. Yet most deep learning models yield only deterministic predictions, providing no indication of per-pixel reliability. These regression tasks are inherently challenging due to heterogeneous land surfaces, skewed target distributions, sensor noise, and signal saturation at high target values, making uncertainty (UC) estimation essential for reliable inference. We address this gap by modeling aleatoric uncertainty using year-long Sentinel-1 SAR and Sentinel-2 MSI time series, proposing two complementary approaches: (i) Gaussian UC, which jointly predicts mean and standard deviation under a Gaussian assumption, and (ii) Quantile UC, which estimates the 10th, 50th, and 90th quantiles to capture asymmetric and heteroscedastic error distributions. Both models are evaluated on three representative EO regression tasks at 10 m spatial resolution. Results show that both approaches match or surpass deterministic benchmarks and existing global products, while delivering well-calibrated, interpretable, and operationally useful confidence estimates. Notably, both models outperform the current 10 m state-of-the-art uncertainty-aware model for canopy height estimation. Our implementation will be available at: https://github.com/RituYadav92/EO-Regression-Uncertainty-Estimation

Tree crowns are a challenging target for resilient AI because they are not static objects: their spectral response, internal texture, translucency, and apparent boundaries change substantially across the growing season. We develop PhenoEmbed, a self-supervised crown-centric temporal embedding model trained with contrastive and masked reconstruction objectives on HeideBench, an 18-date UAV multispectral time-series benchmark for forest crown phenology in D{ö}lauer Heide. The model treats seasonal crown dynamics as phenological appearance change driven by leaf emergence, canopy closure, senescence, and leaf-off conditions. Segmented tree crown polygons are retained as object anchors to extract aligned crown-centered crops through time, allowing one 256-dimensional vector summarizing seasonal crown appearance to be learned per tree. On 5,885 crop-safe crowns, the exported embeddings show structured low-dimensional organization, with the first two principal components explaining 25.1% of variance and nearest-neighbor retrieval producing a median top-1 cosine similarity of 0.946. Compared with handcrafted temporal features and a learned mean-pooling baseline, PhenoEmbed yields substantially more compact nearest-neighbor structure, while ablations show that the contrastive loss, masked reconstruction loss, and explicit seasonal time features each affect the structure of the learned embedding space. These results support PhenoEmbed as a reusable forest crown representation learner and motivate future downstream tests of whether such features improve tree-level models under seasonal change.

Accurate cocoa mapping is increasingly important for deforestation monitoring, supply-chain transparency, and regulatory applications. Spatial aggregation in conventional medium-resolution Earth observation (EO) imagery may limit cocoa detection in heterogeneous smallholder landscapes. In Cote d'Ivoire, we therefore evaluated how mapping performance varies across landscape conditions, whether very high resolution (VHR) imagery provides a meaningful advantage, and whether foundation-model embeddings improve decametric cocoa mapping. We developed models using 0.5 m Pleiades VHR imagery, a 10 m Sentinel-2 annual composite, and embeddings from TESSERA and AlphaEarth Foundations (AEF), and additionally assessed four publicly available cocoa mapping products. Performance was evaluated through a landscape-stratified accuracy assessment using 2,821 independently interpreted reference points distributed across gradients of tree cover density and landscape fragmentation. The VHR model achieved the highest performance (F1 = 0.92) and maintained F1-scores above 0.90 across all strata. Among the decametric inputs, TESSERA performed best (F1 = 0.86), followed by AEF (F1 = 0.82) and Sentinel-2 (F1 = 0.76). Of the existing cocoa products, the Kalischek product performed best (F1 = 0.83), comparable to the internally trained AEF model. Performance differences between VHR and decametric approaches increased with fragmentation and under low and high tree cover density conditions. Targeted VHR acquisition may therefore be particularly beneficial in complex cocoa landscapes, while foundation-model embeddings offer a scalable alternative for large-area mapping.

Suppose we observe two sets of $n$ Gaussian vectors in $\mathbb{R}^d$, with the promise that, after applying a permutation of $[n]$ and a rotation of $\mathbb{R}^d$, the two sets are $ρ$-correlated. The Procrustes matching problem asks us to recover the unknown permutation of $[n]$ that aligns the two sets. The problem is well-studied in the low-dimensional regime $d=O(\log n)$, but the high-dimensional regime $d\gg \log n$ has remained largely uncharted: prior matching guarantees require nearly perfect correlation $ρ=1-o(1)$, even for information-theoretic recovery. Our main result is a polynomial-time algorithm for exact recovery at constant correlation. The algorithm works by computing and comparing weighted counts of a specially chosen family of ``wide'' trees. So long as $d\ge \mathrm{polylog}(n)$, the algorithm succeeds with high probability for any $ρ^2>\sqrtα$, where $α\approx 0.338$ is Otter's tree-counting constant. We complement this algorithmic result with an improved information-theoretic guarantee, showing that exact recovery is possible when $ρ^2 \gtrsim \max\{\log n/d,\sqrt{\log n/n}\}$. We also carry out a low-degree advantage calculation, which suggests that the condition $ρ^2 > \sqrtα$ is necessary for any tree-counting algorithm.

Tree growth determines how much CO2 is sequestered from the atmosphere and temporarily stored in woody biomass. At the same time tree growth is affected by increasing temperatures, more frequent drought periods, late frosts and other extreme events associated with climate change. While continuous measurements of radial (secondary) tree growth using dendrometers are well established, monitoring of shoot elongation (primary growth) has largely been neglected because suitable measurement techniques are lacking. As a result, the effects of climate change on primary tree growth remain insufficiently understood. This work aims at reconstructing native deciduous trees in 3D as a basis for measuring and monitoring shoot elongation over entire tree canopies. Here we explored the use of low-cost UAV photogrammetry and of a multi-camera CraneCam system under real-world conditions. Data were collected in two study areas over an entire growing season. We present sensor evaluations, photogrammetric data acquisition and processing strategies. A special focus is placed on the analysis of the resulting photogrammetric 3D point clouds in terms of accuracy, resolution and completeness. Results demonstrate 3D point accuracies of 5-6 mm for entire trees using consumer-grade UAVs weighing less than 250 g and a 3D reconstruction completeness between 92% and 98% depending on the UAV type. The paper introduces a novel 3Dprinted ground-truth branch to evaluate the capability to reconstructing fine-detail structures such as thin tree shoots. Finally, we discuss operational challenges and initial experiments towards a skeletonization of entire trees based on photogrammetric point clouds.

Speculative decoding greatly increases the interactivity of autoregressive language models by trading off computation for extra tokens generated in a single forward pass. Factorized draft models are especially efficient because they predict future-token marginals in parallel, but their independence assumption causes acceptance rates to degrade sharply as the speculative budget grows. We analyze this limitation and introduce Weaver, a lightweight autoregressive adapter that constructs proposal trees from the top-K marginals of a factorized drafter. Weaver restores conditional dependencies between proposed tokens while avoiding a full-vocabulary projection. To support fast verification for models with Gated Delta Net layers, we derive a rollback-free tree-verification algorithm and implement optimized CUDA kernels in SGLang. By combining these model and systems contributions we achieve a 4.37-fold speedup over autoregressive decoding, and outperform a highly optimized DFlash baseline by 24.7%.

Microphone array-based passive acoustic monitoring is increasingly used for biodiversity sensing in forests. However, design and evaluation of array systems and configurations remains difficult since field recordings are costly, difficult to reproduce, and provide limited control over forest and atmospheric conditions. We present ForestIR, a physics-informed and reproducible simulation framework that links forest and environmental conditions to microphone-array recordings for bioacoustic remote sensing. Through a more realistic sound propagation method and a systematic control over array design and environmental factors, ForestIR provides a practical simulation framework for optimizing array-based monitoring systems, especially for sound source localization purposes. ForestIR generates source-microphone impulse responses (IRs) under user-controlled forest and atmospheric conditions, and renders synthetic array recordings by convolving test signals with controlled background noise. We evaluate and demonstrate realistic features of ForestIR through experiments based on localization sensitivity to forest layout and atmospheric conditions, and also comparison between simulated IRs with sine-sweep IR measurements from a field experiment. ForestIR provides a practical way to test how forest and ground conditions, atmospheric state, and array geometry affect bioacoustic localization, and can support microphone-array design, robustness testing, and synthetic-data generation for passive acoustic monitoring.

Designing microbial strains that produce high-value chemicals at commercially viable titers remains a central challenge in metabolic engineering. Existing computational approaches either rely on stoichiometric constraint-based models that cannot learn from experimental data, or apply tabular machine learning to hand-crafted features that discard the relational structure of biological knowledge. We present Canopy, a heterogeneous graph foundation model that integrates ten public and proprietary data sources into a unified knowledge graph (KG) of 6.9M nodes across 13 types and 34 edge types, covering genes, proteins, metabolites, reactions, pathways, strains, and fermentation experiments. Node features are encoded through domain-specific foundation models (ESM-2 for protein sequences, MoLFormer for chemical SMILES, and PubMedBERT for biomedical text), yielding a multi-modal representation within a single graph. We pretrain a Heterogeneous Graph Transformer (HGT) augmented with SignNet positional encodings, Jumping Knowledge aggregation, and virtual nodes using four self-supervised objectives (link prediction, masked node modelling, distance prediction, and contrastive experiment clustering), balanced via learned homoscedastic uncertainty weighting. On the downstream task of fermentation titer prediction, frozen Canopy embeddings achieve $R^{2} = 0.41$ with a lightweight probe, outperforming tabular baselines (best $R^{2} = 0.24$) and homogeneous GNN variants.

Conventional modeling approaches for LiDAR-based above-ground biomass (AGB) estimation rely on discrete plot-level inventory aggregates. This methodology introduces boundary-effect uncertainties that may severely degrade model performance within small field plots. To solve this limitation, we evaluate a Horizontal Biomass Distribution (HBD) reference mapped continuously from Quantitative Structure Models (QSMs). We trained a sparse 3D U-Net on simulated broadleaved forest structures using three AGB reference types: a standard forest inventory (FI) plot-level aggregate, an edge-effect-free QSM plot-level aggregate, and a continuous HBD mapping. Evaluating training plot sizes scaling from 100 to 2500 $m^2$ , QSM-based models systematically outperformed FI approaches at small plot sizes. Specifically, for 100 $m^2$ plots, the HBD reference reduced the relative root mean square error (RRMSE) by 16.84 $\pm$ 4.37 % and increased $R^2$ by 0.22 $\pm$ 0.05 against the FI baseline. By replacing plot level aggregates with HBDs as AGB reference, this methodology corrects for edge-effects and shows that using an HBD-based reference enhances model performance for small plot sizes.

Sri Lanka has experienced a decade of progressive forest degradation and rising atmospheric pollution, yet district-level respiratory admissions have paradoxically declined, pointing to the confounding role of healthcare access. This study addresses that gap by constructing an 11-year (2014-2024) panel dataset across all 25 administrative districts, integrating satellite-derived vegetation indices, fire radiative power, pollutant concentrations (particulate matter (PM2.5), nitrogen dioxide (NO2), sulfur dioxide (SO2)), carbon flux metrics and population-normalized respiratory admission rates. Two temporally validated XGBoost models were created for annual district-level respiratory rate (R^2 = 0.937) and monthly PM2.5 concentration (R^2 = 0.976) with generalization validated in 21 out of 25 districts (Mean Absolute Percentage Error (MAPE) <= 20%). Shapley Additive Explanations (SHAP) analysis established that cumulative air quality burden is the overwhelming driver of respiratory rate variance (80.1%), ahead of forest degradation (15.6%) and fire activity (4.3%). The Forest-Air-Health (FAH) Risk Index used these SHAP-derived weights to find the districts with the highest risk: Colombo (FAH = 0.802), Gampaha (0.708), and Kalutara (0.682). These findings present the inaugural evidence-based, district-level framework correlating environmental degradation with respiratory health in Sri Lanka, establishing a quantitative basis for focused public health and environmental policy.

The accurate estimation of Above-Ground Biomass (AGB) in mature tropical forests remains a critical challenge in remote sensing, primarily due to the saturation of Synthetic Aperture Radar (SAR) signals in high-density areas and persistent cloud cover affecting optical imagery. To overcome these physical limitations, we propose the Trimodal Coherent Co-attention Transformer (TCCT), a physics-informed deep learning architecture. The TCCT natively fuses optical surface reflectance (Landsat-5) with complex-valued Polarimetric SAR Interferometry (PolInSAR) data from both P and L bands. Unlike traditional fusion methods, our architecture employs complex-valued encoders to preserve spatial phase coherence, coupled with a dynamic co-attention mechanism that acts as an adaptive gating module, reducing the weight of cloud-corrupted optical pixels and shifting reliance to microwave phase data. We also derived a localized spatial allometric calibration model via Levenberg-Marquardt optimization, tailored to the specific wood density of the Paracou region in the Amazon basin. Evaluated using a two-stage protocol, the TCCT first underwent a rigorous 5-fold cross-validation to establish robust global weights (achieving a global RMSE of 4.19 m). Subsequently, following a localized spatial fine-tuning phase over 200 epochs, the model attained an absolute RMSE of 3.78 m and an $R^2$ of 0.33 for Canopy Height Models (CHM), outperforming standard Random Forest, CNN, and Vision Transformer baselines. Our ablation study confirms that preserving phase coherence mitigates deep-canopy signal saturation. When converted to AGB, the fine-tuned TCCT map yielded a Relative RMSE (rRMSE) of 4.51% in dense forest areas above 50 Mg/ha. By meeting the European Space Agency (ESA) BIOMASS mission requirement of less than 20% error, the TCCT provides a robust framework for continuous carbon stock mapping in tropical biomes.

Fault trees are a widely used as effective risk models for complex systems, answering the question "what can go wrong?", especially through minimal cut set analysis. We study fault trees from the perspective of Halpern & Pearl's theory of actual causality. This allows us to use fault trees to answer the question "why has it gone wrong?", which is fundamental to failure diagnostics. We give a complete classification of each of the different notions of actual causality in terms of the fault tree's graph structure and logical structure, and show how minimal cut sets give rise to actual causes.

Monitoring canopy height change is essential for understanding carbon sinks and forest dynamics. Remote sensing enables consistent, large-scale observations of such changes, increasingly integrated with deep learning architectures such as Geospatial Foundation Models (GFMs). However, existing methods and datasets frame the problem as binary change detection, which overlooks both the continuous nature of change, especially for vegetation, and the inherent uncertainty in labels. We present the Canopy Height Change (CHC) dataset, providing 3 $\mathrm{m}$ resolution continuous canopy height differences and associated spatially resolved uncertainties across 10598 $\mathrm{km}^2$ of northern and western Spain. The dataset is paired with a co-located time series of PlanetScope satellite imagery. Based on the dataset, we introduce the task of uncertainty-aware change regression, associated metrics and strategies for fine-tuning GFMs. Furthermore, we evaluate state-of-the-art GFMs and highlight promising directions and remaining challenges for advancing continuous canopy height change estimation.

Recent work has shown that well-optimized individual decision trees can match complex black box models in some settings, primarily in noisy domains. For the remaining settings, however, complex ensembled compositions of trees often achieve higher accuracy at the cost of interpretability, leaving practitioners with difficult modeling decisions along an accuracy-interpretability tradeoff. Ideally, we would like to classify as much of the data as possible with one or a small number of trees, achieving interpretability for most samples while maintaining state-of-the-art accuracy. We introduce Multistage Defer Trees: a sequence of sparse decision trees that each make predictions for most samples, while deferring a small proportion to the next tree in the sequence or, ultimately, to a black box. We demonstrate that we can train this model class to match the performance of complex tree-based ensembles while routing most samples through only one or a small number of sparse decision trees. We discuss a range of techniques for training these models while maintaining simplicity. Our method expands the accuracy--interpretability frontier in settings where single-tree methods remain insufficient, demonstrating that even when complex models are necessary, they need not be fully opaque.

The number of trees is a central computational parameter in Random Forests: increasing it reduces finite-ensemble variability but increases training and prediction cost. Plateau-based tuning adapts this parameter through local comparisons of out-of-bag scores at a geometric triplet of tree counts. After the remaining hyperparameters have stabilized, however, the central triplet point need not converge to a deterministic value; instead, it fluctuates around a stationary regime. This paper develops a stationary-distribution theory for this process. The central ensemble size $B_t$ is modeled as a birth-death Markov chain on a geometric grid, and its stationary distribution is derived through local balance. Under a leading centered folded-normal approximation, equilibrium equations are obtained for the original update rule and a symmetric modified variant, implying that the stationary center $B_*=O(\varepsilon^{-2})$ as $\varepsilon\downarrow 0$. The stationary spread is also characterized. A local Gaussian approximation and a Fokker-Planck interpretation give grid-level variance constants. After conversion to the ensemble-size scale, $σ_{B,*}=O(\varepsilon^{-2})$, while the variance is $O(\varepsilon^{-4})$. The leading relative spread is independent of $\varepsilon$ and controlled by the scale factor and update rule. These results interpret plateau-based Random Forest tuning as a stochastic process rather than a deterministic stopping rule.

Over the past decade, interest in applying machine learning (ML) to automate forest monitoring has grown significantly. However, existing training datasets are predominantly drawn from North America, Europe, Asia, and Australia, leaving a critical gap in African forestry data. To address this limited geographic diversity, we present Miti360, a comprehensive dataset for reforestation monitoring that comprises high-resolution imagery, ground truth data, and longitudinal weather data. Data collection occurred within a 770-ha reforested section of the Kieni Forest in Kenya between March 2023 and February 2025. Miti360 comprises aerial photos (orthophotos and tiles) with tree bounding box annotations, terrestrial images (single and stereo), and detailed data records including tree biophysical parameters, species, and GPS coordinates, alongside historical weather data. Aerial surveys utilized a DJI Mavic 2 Pro, with imagery stitched via Agisoft Metashape and tiled using ArcGIS Pro, while terrestrial captures used smartphones and custom stereo cameras. Miti360 enables the training of ML systems for tasks such as accelerating tree censuses, matching species to geographical areas, modelling growth based on weather conditions, and developing digital twin frameworks. Models can be trained on Miti360 to address challenges specific to Sub-Saharan Africa, ultimately advancing reforestation monitoring and fostering sustainable forestry practices in underrepresented regions. We demonstrate the utility of this dataset by successfully tracking tree crowns across three years and improving the DeepForest model's box precision and box recall by 12% and 69% respectively through fine-tuning on Miti360.

Automated instance segmentation of forest LiDAR point clouds is increasingly critical as forest monitoring moves toward scalable, detailed, 3D measurement. Yet, progress is constrained by label scarcity for tree instances; a single hectare can hold millions of points and hundreds of overlapping, complex crowns, making manual annotation from scratch with raw data laborious and error-prone. Annotations are often corrected from automatic pre-segmentations, but remain costly as these provide no interactive or AI-assisted refinement. Inspired by the promptable paradigm of foundation segmentation models, we propose SelectAnyTree, a promptable instance segmentation model that delineates any individual tree in a 3D forest point cloud from a few clicks. It introduces two key components: Click-to-query prompt encoder and Canopy Height Model (CHM)-guided first prompt. The former turns each click into a single content query, encoding its 3D position and positive/negative polarity together with a pooled local backbone feature. The latter provides treetops as a geometry- and ecologically guided first prompt without any user input. The resulting prompt query is then decoded into one tree mask by a state-space query decoder to efficiently capture long-range context in large-scale forest scenes with linear-time complexity. We evaluate SelectAnyTree in interactive and instance-level settings across seven diverse forest regions and an independent held-out test dataset, demonstrating strong generalization beyond the training domains. It segments a target tree to 78.2 Intersection over Union (IoU) from a single click, 24.8 points above the strongest promptable baseline, and reaches every accuracy target with the fewest clicks, while using far fewer parameters and less inference time than prior promptable models. The source code is available at https://github.com/thanhhff/SelectAnyTree.

Urban tree biomass remains less spatially explicitly quantified than biomass in managed forests because many estimates rely on inventories or coarse products that cannot resolve individual crowns or fine-scale heterogeneity. We present a crown-level above-ground biomass (AGB) framework for an 810km$^2$ landscape in Ontario, Canada, using leaf-off airborne LiDAR (8--10pulsesm$^{-2}$) and near-infrared RGB orthophotography (0.16--0.20m) from 2018 and 2023. A dual-stream cross-attention network trained on rule-based pseudo-labels produced semantic marks for buildings, needleleaf trees, and deciduous trees, supporting crown delineation and functional-type assignment. On independently annotated withheld tiles, global/mean precision, recall, and Dice scores were 0.86, 0.83, and 0.84. Crowns were delineated with multiscale watershed segmentation in mapped tree areas, and AGB was estimated from a crown area--height power-law proxy calibrated to species-specific allometry (Lambert et al., 2005) for 21,921 inventory trees. For 18,713 inventory--segment matched pairs from a 90,726-tree held-out test set, AGB prediction achieved $R^2=0.609$ using inventory crown geometry and $R^2=0.570$ under operational segmentation, identifying crown delineation as the remaining uncertainty source. Aggregated to 30m, estimates yielded total AGB stocks of 1.73Tg in 2018 and 1.81Tg in 2023 (811--850GgC), local densities up to ${\sim}140$Mgha$^{-1}$ along the Niagara Escarpment, and a net carbon gain of 39Gg~C over five years. Deep-ensemble uncertainty maps highlighted high-epistemic-uncertainty areas linked to underrepresented land covers and guided assignment of uncertain crowns to a pooled allometric equation. The framework uses standard provincial data, requires no manual annotation, and produces a public bitemporal crown-level AGB database for trees outside forests at management-relevant resolution.

Counting individual trees is a fundamental task for environmental monitoring, yet remains largely unexplored with satellite imagery. At these resolutions, isolated trees may still be identifiable, but crown boundaries become ambiguous in dense forests, making the notion of an individual tree inherently ill-defined. Moreover, large-scale manual annotations of individual trees are prohibitively expensive. While scalable supervision can be derived from airborne LiDAR, the resulting annotations are noisy and difficult to exploit effectively. We address these challenges by formulating tree counting as a spatial density matching problem supervised through Unbalanced Optimal Transport. This formulation naturally accommodates both precise localization of isolate trees and robust density estimation in dense forests. We further introduce a self-correction mechanism that leverages transport residuals to progressively refine noisy supervision during training. We evaluate our approach on TinyTrees, a new benchmark spanning three continents and three satellite sensors, comprising over 216 million tree annotations (including 639k manually verified instances) across $25\,890$ km$^2$. Our method consistently outperforms detection-based, regression-based, and transport-based distribution-matching baselines, demonstrating the effectiveness of unbalanced transport and reliability-aware supervision for large-scale tree counting from satellite imagery. Code, data and models are available at https://github.com/dgominski/treematch.

Forest imagery analysis often involves multiple tightly coupled vision tasks, which must be performed under substantial variation in geographic regions, sensors, and acquisition conditions. However, practitioners often lack a unified tool that is geospatial-native, cloud-optimized, and ML-integrated for end-to-end workflows spanning annotation, prediction, visualization, and downstream analysis at scale. We present AwakeForest, an interactive end-to-end platform designed for large-scale forest imagery that integrates model-assisted inference, automatic annotation, and human-in-the-loop refinement within a single workflow. Our platform supports plug-and-play integration of pretrained models and enables scalable interaction with forest imagery ranging from standard aerial scenes to large orthomosaics that can span several gigabytes to hundreds of gigabytes. AwakeForest produces analysis-ready outputs that can be directly used for downstream analysis and to support iterative model and annotation updates on new scenes. We demonstrate the system on the PALMS dataset and illustrate how AwakeForest supports an end-to-end workflow for practical forest management and analysis.

The recently introduced EML (Exp-Minus-Log) function acts as continuous analogue of NAND gates, providing a compositional building block capable of representing elementary functions. In this work, we study the expressive power of tree-structured compositions of EML functions. We show that such trees enjoy a universal approximation property for functions in $W^{k, \infty}$ for $k \in \mathbb N$, drawing on classical neural network approximation arguments while exploiting the ability to explicitly construct EML trees that mimic polynomial representations. We further propose a learning algorithm for EML-type trees equipped with fitting parameters, and demonstrate its feasibility in practical optimization problems. Our results establish EML trees as a theoretically grounded framework for function approximation.

Long-form narratives are challenging for long-context models because their structure is implicit: events, characters, and plotlines interact across hundreds of pages without the explicit cues that guide navigation in structured documents. We address this by constructing storyline trees, hierarchical representations that organize narratives from global themes and major plotlines to fine-grained events. We first segment chapters into contiguous narrative segments, or scenes, and use them as the basic units for tree construction. We then infer storyline trees through complementary top-down and bottom-up procedures that derive, refine, cluster, and summarize storylines at multiple levels of abstraction. We showcase the utility of this representation for question answering: storyline trees enable adaptive retrieval, allowing models to iteratively inspect high-level narrative structure and retrieve scene-level evidence on demand. Experiments on three long-context narrative QA benchmarks show that adaptive retrieval outperforms strong baselines, including post-trained long-context models and agentic chunk-based methods. Ablations confirm that scenes are more effective basic units than chapters or generic segmentation, and that gains persist under matched retrieval budgets

Remote sensing is increasingly relied upon to deliver actionable science for forest and wildfire risk management across large landscapes. Wall-to-wall, annually updated maps are a persistent need for effective forest management. Many planning systems and data collections combine disparate data sources with different purposes, vintages, and prediction quality, which leads to confounding behavior in operational planning systems. We introduce the VibrantForests framework, developed and applied to map forest attributes and provide a coherent foundation for effective forest and wildfire planning. VibrantForests includes a satellite-based forest structure model trained on lidar-derived samples and applied across the contiguous United States to concurrently generate estimates of canopy cover, canopy height, aboveground live tree biomass, basal area, and quadratic mean diameter at 10-meter resolution. We demonstrate predictive capability spanning the full spectrum of forest conditions ranging from sparse-canopy/low-biomass to dense-canopy/high-biomass. Results show that our model extends the range at which saturation is commonly encountered in comparable passive-sensor models, and reduces regression-to-mean behavior that commonly produces overestimation of forest attributes in small/sparse conditions and underestimation in large/dense conditions. The VibrantForests framework addresses a key limitation in large-area forest and wildfire planning by delivering coherent wall-to-wall estimates of management-relevant attributes at annual cadence and 10m resolution.

Camera-trap monitoring in African tropical forests increasingly extends beyond closed-canopy interiors to riverbanks, clearings, and park edges. Among available open tools for African forest camera-trap classification, DeepForestVision is the only one providing a matched offline workflow for both photographs and videos, and previous work showed that it outperformed other available baselines on a comparable benchmark. However, it was designed for closed-canopy, ground-level forest interiors and uses a 35-class prediction space that becomes too coarse when deployments encounter arboreal primates, birds, semi-aquatic taxa, or human-associated confounders such as livestock. We present DeepForestVisionV2, an ecology-driven expansion from 35 to 64 prediction classes (61 animal classes plus human, vehicle, and blank) designed to address three recurrent deployment gradients: vertical stratification, scene openness, and anthropogenic interfaces. DeepForestVisionV2 retains the same offline workflow and is trained on 1,535,010 photographs and 243,354 videos from multi-country African tropical-forest projects. Evaluation combines a cross-country cropped-photo validation set, used to assess robustness across sites and camera-trap settings, with three held-out Uganda video benchmarks spanning the targeted gradients. On the validation set, DeepForestVisionV2 reaches 0.86 accuracy, 0.82 macro-F1, and 0.81 balanced accuracy. On the deployment benchmarks, it preserves or improves baseline accuracy despite its harder classification task, while increasing the number of identified taxa from 22 to 29 in forest-interior videos and from 4 to 9 at riverbanks. In the park-edge use case, it raises accuracy from 0.62 to 0.86 and reduces false alarms from 11 to 0. These results show that DeepForestVisionV2 materially improves field utility while preserving robustness across sites, habitats, and camera-trap settings.

Legged robots are increasingly deployed in forests for ecological surveying and monitoring, yet their autonomy is often interrupted consequent to the challenges posed in traversing forest environments. Forest entrapments, for example, when a robot's legs are ensnared in vines or other vegetation, result in loss of stability and toppling. Such events not only disrupt the mission and require manual intervention, but also risk damage to the robot hardware. To address the absence of a dedicated dataset to investigate these failure modes in forest environments, we present ForEnt, a multi-modal dataset collected with the low-cost Unitree Go2 quadruped across eight forest sites in the Southampton Common Woodlands, UK. For our dataset, over approximately 1.7 km of traversals in 11 sequences were conducted, yielding 69 recorded entrapment events. ForEnt includes time-synchronized RGB-D images, LiDAR scans, proprioceptive data, and third-person video, enabling analysis of terrain factors contributing to entrapment and providing labeled sensor streams for reproducible benchmarking. By supporting the evaluation of entrapment detection strategies, ForEnt lowers the barrier to developing robust quadruped robot deployments in challenging forest environments.