Co-Occurrence

Forecasting scientific relations can guide discovery by identifying promising connections before they emerge. Existing approaches often model concept semantics and graph structure separately or summarize semantics over coarse historical snapshots, leaving semantic representations potentially misaligned with rapidly evolving graph evidence. We propose a time-aligned evolving concept graph framework that jointly models semantic and structural evolution. Its core idea is to treat dated papers as shared update events, reconstructing semantic and structural states from the same publication history through each prediction time. Pair-level fusion combines these states to forecast first co-occurrence, relation formation, and conditional relation type. Holding architecture and training fixed, refreshing context alongside graph updates improves mean relation AUPRC by 16.6% over frozen context. On a graph built from 187,848 papers with 270,687 concepts and 7.45 million co-occurrence links, the complete framework improves mean relation AUROC from 0.9290 for the strongest evaluated baseline to 0.9722, with mean population-weighted AUPRC 0.005778.

Few-shot audio classifiers may rely on foreground-background co-occurrences and fail when those correlations shift. On SpurAudio, the resulting representation shift is concentrated and class dependent: for ResNet12, the top 10 percent of channels explain 82.80 percent of the null-corrected shift contribution. We propose SAMPLESELECT, which predicts a fixed-budget feature mask independently for each input while keeping the encoder and source classifier frozen. Training uses differentiable Gumbel Top-k selection with foreground classification and cross-background contrastive losses; inference uses deterministic Top-k masks and support-only linear adaptation. Across ResNet12 and Conv64 in 5-way 1-shot and 5-shot evaluation, SAMPLESELECT gives the best OOD accuracy among the compared methods and improves the matched full-representation control by 4.90-8.38 percentage points. Ablations and representation analyses further support the learned selection mechanism. Code is available at https://github.com/Cross-Innovation-Lab/SAMPLESELECT/

This report presents results from Project Qualia, an ongoing effort to determine whether experiential similarity between songs, a structure not captured by genre or metadata taxonomies, can be recovered from real listening behavior. We constructed a large-scale dataset of listening sessions, comprising 1.29 billion scrobbles collected from 9,396 users via the Last.fm API and reduced through a preprocessing pipeline to 531.6 million training scrobbles across 28.6 million sessions. On this corpus, we trained a skip-gram Word2Vec model (Song2Vec), treating each session as a sentence and each track as a token. As anticipated, the resulting embedding space was dominated by artist identity, a consequence of single-artist runs within sessions. To test for a subtler, artist-independent signal, we developed an artist-residual procedure: subtracting each artist's centroid from its tracks' embeddings and evaluating whether the remainder retained structure. Mean cross-artist cosine similarity fell from 0.2487 in raw embedding space to 0.0005 in residual space, yet 4,577 cross-artist track pairs retained cosine similarity $\ge 0.70$ in residual space, forming coherent genre- and era-based clusters, including trip-hop, 1990s grunge, 2020 mainstream pop, and cross-composer classical piano pairs at cosine similarity up to 0.95. These results confirm that the training data contains experiential structure independent of artist identity, establishing an empirical basis for an architecture designed to learn this experiential layer directly.

Language models learn about grammatical number primarily from co-occurrence, and show frequency effects as a result---sometimes taken to indicate that they do not learn abstract ``rules'', and are instead dependent on specific lexical items. Testing generalization with text stimuli alone cannot settle this debate, since distributional cues (is/are, this/these) easily give number away. We instead use cross-modal generalization as a tool to investigate abstractions in LMs that can also accept visual inputs (VLMs), restricting the evidence that diagnoses number to an extra-linguistic modality. We teach VLMs pairs of new nouns by adding new embeddings and only updating them during learning, comparing conditions where number is diagnosed by visual cues alone against ones where it is disambiguated by text. Across behavior, representational dynamics, and causal mechanisms, we find non-trivial evidence for cross-modal generalization across both exposure conditions, and that linguistic vs. extra-linguistic cue conditions are treated in similar ways in the internal mechanisms of the model. This suggests that statistical learners like VLMs can generalize beyond surface-level co-occurrence and show genuine abstraction-compatible behavior.

We study unsupervised hypergraph alignment, where the goal is to infer node correspondences between two hypergraphs using only structural information, without node features, labels, seed matches, or side information. Direct higher-order formulations can represent hyperedge interactions faithfully, but they can be computationally demanding and cumbersome for non-uniform hypergraphs. Graph-reduction approaches introduce a different challenge: clique expansions keep the alignment problem on the original node set but collapse all hyperedge evidence into one pairwise graph, whereas bipartite expansions preserve incidence structure but enlarge the problem from nodes to nodes plus hyperedges. We introduce FALCON (Filtration-based hypergrAph aLignment via Cross-scale Optimal traNsport), an unsupervised optimal-transport framework for hypergraph alignment. Instead of representing each hypergraph by a single collapsed clique graph, FALCON constructs a filtration-induced sequence of clique-based co-occurrence dissimilarity matrices and jointly aligns all levels through one shared multi-scale Gromov--Wasserstein (GW) objective. The shared transport plan enforces a globally consistent node correspondence across filtration levels while avoiding the auxiliary hyperedge nodes introduced by bipartite expansion. Experiments on perturbation benchmarks derived from real-world hypergraphs show that FALCON is robust to structural noise and in almost all cases outperforms strong graph- and hypergraph-alignment baselines.

Object hallucination in multimodal large language models arises when language priors and corpus co-occurrence bias outweigh the visual evidence, with nothing tying an individual object mention to what the image shows. Most remedies intervene at decoding time without training, yet under a unified protocol their benefit is confined to short captions;supervised fine-tuning (SFT) on a detail- rich corpus lengthens captions, but over forty percent still name absent objects. This paper proposes Dual-Stream Cross-Anchor Correction (DSCC). Unlike work that post-processes decoding, DSCC is the first to inject object-level visual anchors into the language model itself during fine- tuning: a perception stream aligns object-level hidden states at an intermediate layer to frozen text anchors by a bidirectional contrastive objective; a cognition stream lets deeper layers query those anchors by cross-attention at every generation step; and a two-stage curriculum gate couplesthem, making evidence retrieval a structural constraint at each autoregressive step. Under one backbone and one scoring protocol, experiments span long-caption hallucination, object-existence discrimination and cross-domain generalisation, with vanilla SFT on the same corpus and schedule as a length- and density-matched control, so gains are attributed layer by layer. DSCC is the only method reaching the long-caption, low-hallucination region: captions roughly 1.9 times the baseline length at 88.19% precision per object mention, the highest under a density-independent criterion. Ablations expose a synergy: the perception stream alone degrades precision yet reverses sign when stacked on the cognition stream. No universal superiority is claimed: three out-of- domain benchmarks yield a predictable, falsifiable domain-conditionality, the synergy being bound to the anchors' semantic domain and breaking on charts and optical illusions.

Notice-and-comment rulemaking gives any affected party the same formal right to influence federal regulation, but formal access is not substantive capacity to shape rule text. Existing strategies operate at the rule or aggregate-corpus level, too coarse to capture the discrete regulatory obligations where commenters seek change. We introduce obligation-level responsiveness auditing, an auditable, AI-assisted framework for measuring whether public-comment engagement co-occurs with changes to specific regulatory duties. The framework extracts proposed and final-rule obligations, matches comments to the obligations they address, and classifies proposed-final outcomes; each load-bearing component is evaluated against blind human judgment. We apply the framework to 70,075 comments across 36 EPA anchor rulemakings, drawn from a corpus of 786,197 comments across 6,145 dockets from 2010-2022. Three descriptive findings emerge. First, engagement is associated with revision at a modest within-docket magnitude. Second, support-versus-opposition direction does not clearly differentiate outcomes, an informative null inconsistent with simple preference-aggregation. Third, under a permissive reconstruction of commenter type, organizational-majority engagement concentrates in editorial-refinement rather than substantive-modification outcomes at the cross-docket level. A blind human audit of the load-bearing outcome contrast preserves this third finding under corrected labels and reveals that text-similarity methods are insufficient for distinguishing editorial from substantive regulatory change, a measurement-validity lesson we treat as a supporting methodological contribution. Together, these findings locate the equity asymmetry upstream of agency response: in differential capacity across commenter populations to identify, interpret, and contest specific legal obligations.

Thoracic pathologies rarely occur in isolation, yet standard multi-label classifiers rely on shared global descriptors, discarding \emph{where} findings lie and \emph{how} they co-occur. We propose \textbf{C$\mathbf{^2}$A} (Co-occurrence Aware Class Attention), a classification head that explicitly couples spatial evidence with clinical priors. First, C$^2$A casts pooling as an expectation over learned per-class spatial attention maps, yielding localized descriptors for each disease. Second, it couples these descriptors via a learnable graph warm-started from empirical label co-occurrence. A single residual message-passing step shares evidence among related findings, proving to be a bounded perturbation of the identity where co-occurrence enters each logit through an explicit bilinear interaction. On CheXpert, C$^2$A achieves a superior $0.895$ macro-mean AUROC, outperforming advanced context-gating baselines. Crucially, gains concentrate on highly co-occurrent classes with ambiguous spatial evidence (rescuing Atelectasis by $+1.5$ over GCG), demonstrating the prior's regularizing effect with a negligible overhead of one linear projection and a $C\!\times\!C$ edge matrix.

Trajectory-User Linking (TUL) aims to identify the owner of an anonymous trajectory from a set of candidate users, providing a basis for user mobility analysis and personalized location-aware services. Existing methods often learn Point of Interest (POI), temporal, and semantic features independently, make limited use of structural knowledge shared across trajectories, and compress structural and sequential information before classification. To address these issues, we propose Multi-Relational Knowledge Graph Enhanced Embedding for Trajectory-User Linking (MakeTUL), which, to the best of our knowledge, is the first attempt to introduce knowledge graph representation learning into TUL. MakeTUL organizes visit-time, POI-category, and transfer-speed information as typed relations in a multi-relational mobility knowledge graph, allowing heterogeneous mobility semantics to jointly constrain the learned embeddings. The resulting POI representations are further enriched with high-order co-occurrence patterns extracted from the trajectory collection, providing structural prior knowledge for sparse and overlapping trajectories. By integrating these prior-enhanced representations with temporal, category, and transfer information, the trajectory sequence learning module captures ordered mobility patterns, while a dual-branch classification layer preserves and combines global structural evidence and sequential evidence at the decision level.

Zero-shot ObjectNav methods increasingly use vision-language priors, but direct object-object similarity in the latent space is often a weak proxy for spatial co-occurrence. We present an analytical, training-free semantic navigation pipeline that mediates object relationships through a compact room lexicon. Each object label is mapped to a CLIP-derived Room Probability Vector (RPV), and object-target co-occurrence is computed from RPV distribution overlap. These scores are projected onto a value map using geodesic flood-fill propagation (Fast Marching Method), with adaptive signal decay, and are used to rank frontiers by semantic score for navigation. Together, these components form an integrated, training-free, object-centric pipeline for open-vocabulary zero-shot navigation. Results show that our object-centric approach improves Success Rate (SR) and Success by weighted inverse Path Length (SPL) by a relative 3% and 1.3%, respectively, compared to image-holistic baselines on the HM3D dataset validation split, while preserving interpretability and open-vocabulary flexibility. Code is available at: uts-ri.github.io/RPV-SemNav.

Coordination, a fundamental linguistic structure, remains a subject of intense debate, and its exact nature continues to elude theoretical linguistics. A common view holds that only same-category constituents can be conjoined, which has been challenged by the many grammatical unlike coordinations found in natural language. Treating language models as a computational testbed, we investigate whether the acquisition of unlike coordination requires direct exposure in the training data, or whether it can emerge organically from general compositional abilities. Using Filtered-Corpus Training (FiCT), we train GPT-2 models on corpora from which all instances of unlike coordination have been removed. We find that direct exposure is not necessary: models trained on filtered data successfully generalize to unlike coordination, achieving perplexity and grammaticality judgments comparable to models trained on unfiltered text. Furthermore, our analyses of internal representations indicate that language models process unlike coordination by treating the conjoined elements as belonging to similar structural categories or through a mechanism akin to deletion, both of which appear learnable from exposure to alike coordination alone. This work contributes to the growing understanding of how language models internally represent linguistic structures, while also adding to the broader debate on coordination by showing how models generalize and process unlike coordination without direct exposure.

Background: Depression frequently co-occurs with ADHD and autism spectrum disorder (ASD), but population-level differences in symptom expression between these groups remain underexplored. Objective: We examined whether social media users with ADHD and ASD differ in how they express DSM-5 depressive symptoms in their tweets, and whether differences persist across varying levels of depressive-content filtering. Methods: We analysed 1,282,437 tweets from 792 users (622 ADHD; 170 ASD) with self-reported diagnoses on Twitter. Tweets were pre-filtered for depressive relevance using zero-shot NLI, then classified into nine DSM-5 symptoms using MentalRoBERTa fine-tuned on ReDSM5. Profiles were mean-centered per user. We applied L1-penalised logistic regression with cross-validation to distinguish ADHD from ASD users, complemented by Pearson correlations for symptom co-occurrence, and tested robustness across five filtering thresholds using bootstrapping. Results: MentalRoBERTa achieved macro-F1 of 0.901 on a held-out set, outperforming the original ReDSM5 benchmark. ADHD vs ASD classification yielded stable but modest performance (cross-validated ROC-AUC 0.645-0.653). Cognitive issues, sleep issues, appetite change, and fatigue leaned toward ADHD, while suicidal ideation and anhedonia leaned toward ASD. A largely shared symptom co-occurrence structure emerged between groups; no pair met our criterion for a robust disorder-specific difference. Conclusions: Population-level differences in depression-related language between ADHD and ASD social media users were consistently observed across thresholds, reflecting reproducibility rather than clinical validity. Findings are exploratory and do not establish differing phenomenology at the individual level.

Medical imaging models often degrade when deployed at new clinical sites due to differences in imaging equipment, protocols, and patient populations. Test-time adaptation (TTA) addresses this by updating a pretrained model using only unlabeled target data, without access to source data. However, existing TTA methods were designed for single-label classification on natural image benchmarks, minimizing entropy uniformly across all samples without considering label dependencies. This overlooks a key property of multi-label medical imaging: pathologies do not occur independently but exhibit structured co-occurrence patterns. In this work, we propose Co-occurrence Weighted Adaptation (CoWA), which leverages disease co-occurrence patterns as a reliability signal for adaptation. CoWA estimates label co-occurrence structure from model predictions and downweights samples that deviate from expected patterns, enabling adaptation to rely more on consistent predictions while reducing the impact of noisy ones. We evaluate CoWA on chest X-ray benchmarks under domain shifts and demonstrate consistent improvements over established baselines.

Chest X-ray multi-label classification is a core task in intelligent medical imaging diagnosis. However, real clinical data often exhibit extreme long-tailed distributions, leading to degraded performance on rare diseases in tail classes. This issue is not only driven by data scarcity but also by two intrinsic factors:1) attenuation of tail-class lesion representations under complex anatomical backgrounds, and 2) dominance of head classes in modeling label co-occurrence relationships. To address these challenges, we propose TRCGL-Net. First, a learnable text-guided conditional diffusion model is employed to generate high-quality tail-class chest X-ray image samples under disease semantic constraints, improving data diversity and realism of rare disease patterns while alleviating class imbalance and preserving pathology-consistent semantics.Second, a channel reweighting mechanism is introduced to perform feature recalibration by emphasizing disease-relevant feature channels, thereby improving feature discriminability under long-tailed distributions.A class-aware attention mechanism is further applied to generate class-specific attention maps, enabling the model to localize disease-relevant regions and focus on fine-grained lesion areas.Finally, a graph convolution network based on label co occurrence is introduced to establish an information propagation mechanism among categories. Experiments on the PadChest dataset show that the proposed method achieves a tail-class mAP of 0.4904, an overall mAP of 0.4408, and an mAUC of 0.8989, outperforming state-of-the-art methods. TRCGL-Net effectively improves recognition performance for rare diseases under long-tailed distributions and mitigates the impact of extreme class imbalance in chest X-ray multi-label classification.

RAG systems retrieve documents optimized for answering one query at a time. Yet enterprise users arrive with sessions, that is, coherent episodes of related questions that span semantically distant parts of the knowledge base. We show that a single retrieval call over a standard knowledge base covers only 41% of a user's session-level information need. To close this gap, we reorganize the KB offline using co-occurrence-aware clustering and expand retrieval candidates through cluster neighborhoods at query time. On WixQA (6,221 enterprise support articles), our method raises single-query session coverage to 58% (+17% absolute; 95% CI: [14.1, 20.4]), reduces retrieval calls to 70% coverage by 34%, and compresses the KB to 20% of its original size, all consistently across four embedding models and six functional domains. We argue that session-level coverage, not single-query recall, should be the primary metric for enterprise RAG evaluation.

Prototype-based medical image classifiers present three clinical limitations: they treat findings as independent, silently amplify unsafe physician feedback, and require full retraining whenever a new finding is needed. We present GRAPE (Graph-Augmented Prototype Explanations), a unified architecture that addresses all three challenges. First, a Graph Attention Task Head models anatomical concept co-occurrence, boosting macro-F1 by +13.8,pp over the prototype baseline on TBX11K. Second, a Concept-Mismatch Safety Check - the first such mechanism in prototype-based medical classifiers - warns when the model's dominant finding inside a doctor-drawn region conflicts with the claimed label, catching 85% of erroneous annotations versus 51% for MC-Dropout with no extra inference cost. Third, Open-Vocabulary Prototype Anchoring aligns visual prototypes to clinical text, allowing a new finding to be added from a single labeled image without modifying any other component. On NIH ChestX-ray14, one Effusion example recovers full-supervision localization accuracy; on TBX11K, prototype maps achieve 2.6x better lesion localization than end-to-end baselines. All three capabilities add only +1~ms latency at interactive batch size. The project page is https://github.com/KurbanIntelligenceLab/GRAPE.

Retrieval-Augmented Generation (RAG) mitigates hallucinations in Large Language Models (LLMs) by grounding the generation process on external knowledge. However, standard RAG approaches struggle with multi-hop reasoning. While recent graph-based RAG methods improve the retrieval of interconnected chunks, they often rely on computationally expensive and error-prone LLM-based extraction pipelines. To address these issues, we propose TIGRAG (Token-Induced GraphRAG), an efficient graph-augmented RAG framework based on a token co-occurrence Knowledge Graph. TIGRAG directly models topological relationships between tokens using sliding-window co-occurrence statistics, thus enabling scalable graph construction. During inference, it combines graph-based semantic expansion and neural reranking to retrieve interconnected evidence for multi-hop reasoning. Specifically, it introduces an iterative entity-driven retrieval strategy that progressively expands the query using bridging entities extracted from previously retrieved contexts. We evaluated TIGRAG on three widely adopted multi-hop Question Answering (QA) benchmarks. Experimental results demonstrated that our framework consistently outperforms dense retrieval and graph-based RAG methods in both retrieval and downstream QA tasks, while substantially reducing indexing time, inference latency, and prompt footprint.

Joint Embedding Predictive Architectures (JEPAs) have recently emerged as a promising paradigm for world modeling by learning predictive dynamics in a latent space rather than generating future observations at the input level. Despite their empirical success, the theoretical understanding of JEPA-based world models remains limited. In this paper, we develop the first generalization theory for JEPA-based world models. We formulate JEPA pretraining as a conditional spectral graph learning problem and show that the JEPA objective is equivalent to a low-rank factorization of an action-conditioned co-occurrence matrix. Building on this characterization, we establish a connection between JEPA pretraining error and downstream planning regret, leading to a finite-sample generalization bound for JEPA-based world models. Our analysis reveals an inherent trade-off between approximation and sample errors with respect to the latent dimension, providing theoretical insights into the advantages and limitations of latent predictive models compared with input-level predictive approaches.

Can a statistically significant, large-effect-size finding in computational social science be entirely an artifact of the measurement instrument? We present a case where the answer appears to be yes. Analyzing 85 interviews across four public intellectuals (2016--2026), we find a robust negative-affect/emphatic-certainty lexical co-occurrence pattern under keyword-based scoring ($r = 0.72$--$0.93$, $p < 0.01$ for all four speakers). Replacing keyword counting with LLM-based zero-shot semantic classification on the complete diarized corpus (32,625 sentences) dramatically reduces this correlation: Dalio's $r = 0.851$ drops to $r = 0.206$, with two speakers showing negative $r(\text{neg}, \text{emphatic})$ and one showing null. In contrast, the LLM reveals a strong negative-hedging coupling across speakers -- Rogoff's $r(\text{neg}, \text{hedged}) = 0.875$ ($p = 0.001$) and Zeihan's $r(\text{neg}, \text{hedged}) = 0.722$ ($p = 0.008$) -- consistent with the conventional expectation that pessimistic discourse attracts hedging, not certainty. Sentence-level error analysis traces this discrepancy to three structural failure modes in keyword lexicons -- syntactic blindness, polysemy blindness, and categorical absence -- illustrated through cases where keyword counting inverts semantic meaning (e.g., ''never absolutely totally confident'' scored as high-certainty). We argue that keyword lexicons measure a universal lexical co-occurrence tendency -- negative discourse naturally attracts emphatic vocabulary -- that is orthogonal to, and can systematically invert, rhetorical stance. Treating keyword counts as measurements of epistemic certainty is a category error: a finding that appears to be about a speaker's psychology may be entirely about the counting of words.

While WGS-based AMR prediction has reached high accuracy, existing models lack a mechanism to ground neural attributions in established biological pathways. We present KG-TRACE, a novel neuro-symbolic framework that integrates the WHO mutation knowledge graph (KG) as a structured biological constraint on a neural genomic model. Unlike existing methods that learn statistical patterns in isolation, KG-TRACE fuses genomic features and RotatE-based KG embeddings through a learned epistemic trust gate, dynamically weighting neural evidence against symbolic biological knowledge. Evaluated on the CRyPTIC M. tuberculosis cohort, KG-TRACE achieves an AUROC of 0.9760 for isoniazid, achieving competitive accuracy while its primary value lies in symbolic grounding, not predictive uplift. More importantly, we introduce the Biological Grounding Ratio (BGR), a dataset-level metric that quantifies alignment between neural attributions and established biology. Our framework achieves a 92.5% symbolic coverage of isoniazid-resistant predictions and effectively identifies MDR co-occurrence artifacts by issuing laboratory follow-up flags for 'UNCERTAIN' cases. We demonstrate that neuro-symbolic grounding provides a verifiable audit trail for clinicians, bridging the gap between predictive accuracy and clinical trust.

Text-to-image (T2I) generation models have achieved remarkable progress in producing visually realistic images from natural language prompts. Yet it remains unclear whether their success reflects genuine causal understanding or sophisticated pattern matching over visual-textual correlations. Inspired by Russell's inductivist turkey, we introduce Counterfactual-World (CF-World), a counterfactual benchmark designed to investigate whether text-to-image models can generate images under rules that systematically contradict real-world priors. CF-World organizes each scenario into three progressive levels: factual generation under ordinary world knowledge, explicit counterfactual generation with direct visual instructions, and implicit counterfactual generation requiring causal deduction from altered rules. We evaluate both open-source and closed-source T2I models using a Vision Language Model (VLM)-based evaluator (CF-Eval). Furthermore, we introduce two metrics: Prior Resistance Rate (PRR), which measures a models' ability to overcome entrenched real-world priors, and Reasoning Retention Rate (RRR), which assesses whether models can maintain reasoning-dependent counterfactual generation without explicit visual cues. Experiments show that all models exhibit sharp degradation from factual to counterfactual settings. Further analyses suggest that these failures arise because current T2I models encode world knowledge and visual appearances as tightly coupled patterns. Consequently, their heavy reliance on frequent visual co-occurrences within the training data forces them to default to familiar commonsense priors when tasked with rendering counterfactual worlds.

Unlearning has emerged as a key technique to mitigate harmful content generation in diffusion models. However, existing methods often remove not only the target concept, but also benign co-occurring concepts. As illustrated in Fig.1, unlearning nudity can unintentionally suppress the concept of person, preventing a model from generating images with person. We define these undesirably suppressed co-occurring concepts that must be preserved CARE (Co-occurring Associated REtained concepts). Then, we introduce the CARE score, a general metric that directly quantifies their preservation across unlearning tasks. With this foundation, we propose ReCARE (Robust erasure for CARE), a framework that explicitly safeguards CARE while erasing only the target concept. ReCARE automatically constructs the CARE-set, a curated vocabulary of benign co-occurring tokens extracted from target images, and leverages this vocabulary during training for stable unlearning. Extensive experiments across various target concepts (Nudity, Van Gogh style, and Tench object) demonstrate that ReCARE achieves overall state-of-the-art performance in balancing robust concept erasure, overall utility, and CARE preservation.

Algorithms have become central to scientific research in the era of artificial intelligence (AI). Although algorithm mentions in papers are often used to indicate popularity and influence, existing studies usually evaluate individual algorithms in isolation and pay limited attention to the collective influence formed through their interconnections. This study constructs large-scale algorithm co-occurrence networks in natural language processing (NLP) based on the full text of academic papers and investigates algorithm influence from a network perspective. Using deep learning models, we extract algorithm entities and build overall, cumulative, and annual co-occurrence networks. We analyze their structural characteristics and apply multiple centrality measures to assess the group influence of algorithms across the whole field and over time. The results show that algorithm networks display typical features of complex networks, with increasingly dense connections developing over approximately two decades. Classic, high-performing algorithms and those located at the intersections of different research periods tend to have high popularity, control, centrality, and balanced influence. When the influence of an algorithm declines, it usually loses its core network position first, followed by weaker associations with other algorithms. This study is the first large-scale analysis of algorithm co-occurrence networks. Covering more than four decades of academic publications, it provides a temporal and structural view of algorithm influence and offers a foundation for future research on networks linking algorithms, scholars, and tasks.

Vision-language models (VLMs) achieve strong cross-modal alignment but remain brittle to negation, often relying on shallow word associations rather than compositional reasoning. Fine-tuning on negation-specific data can also compromise their general purpose capabilities through catastrophic forgetting. We introduce HANCLIP (Hyperbolic, Angular, and Negation), a geometry-aware framework that improves negation sensitivity while preserving the structure of the pretrained joint embedding space. HANCLIP combines a hyperbolic contrastive objective, which models hierarchical relations and semantic asymmetries, with an angular triplet loss that separates negated descriptions from their affirmative counterparts. Using only 20,000 image-text quadruplets, HANCLIP consistently improves performance across CLIP, LongCLIP, and SmartCLIP backbones on the NegBench benchmark, while maintaining or improving zero-shot classification and image-text retrieval performance. These results show that lightweight, geometry-guided objectives can enhance negation understanding without large-scale retraining.

This work examines the semantic geometry underlying NLP models. We compare supervised vector embeddings, such as CamemBERT, with lexical co-occurrence graphs that encode semantic relations more directly. While transformer-based embeddings achieve strong performance, their induced geometries often display unsatisfactory distributions. In contrast, graph-based models reveal a clearer and more human-readable organization of meaning. We have implemented a methodology that allows us to perform a comparative analysis either based on the structure of the graphs or based on the topology of the embeddings induced by these two approaches. The results of the comparison -- applied to the French "Great National Debate" corpus a collection of citizen contributions to the public debate -- show a similar local topology but a very different overall structure and topology. Theses findings suggest complementary perspectives between deep supervised models and graph-based models, considering a new pathway to guide neural architectures toward more stable and interpretable convergence with graphs structures.

Audio-visual speaker tracking aims to localize and track active speakers by leveraging auditory and visual cues, enabling fine-grained, human-centric scene understanding. This capability is essential for real-world applications such as intelligent video editing, surveillance, and human-computer interaction. However, existing datasets are largely limited to simple or homogeneous audio-visual scenes with coarse annotations. Such oversimplified settings bias evaluation toward static audio-visual co-occurrence, rather than rigorously assessing robust spatiotemporal modeling and cross-modal reasoning in complex, dynamic scenes. To address these limitations, we introduce AVTrack, a human-centric audio-visual instance segmentation (AVIS) dataset designed for dynamic real-world scenarios. AVTrack features diverse and challenging conditions, including camera motion, visual occlusions, and position changes. Evaluations of representative AVIS methods on AVTrack reveal substantial performance degradation, establishing AVTrack as a challenging benchmark for robust human-centric audio-visual scene understanding in complex environments. We further provide a simple yet effective baseline to facilitate future research. Project website: https://FudanCVL.github.io/AVTrack/

Schema matching is a fundamental step in integrating heterogeneous data sources. While Pre-trained Language Models (PLMs) have revolutionized this task by capturing linguistic semantics, they typically process tabular data as serialized text sequences of standalone column descriptions. This serialization discards critical structural information -- specifically, the row-level co-occurrences, i.e. the relational context -- forcing models to rely solely on column header semantics or standalone distributions. To bridge this gap, we propose SemStruct, a framework that joins the semantic power of frozen PLMs with the structural inductive bias of Graph Neural Networks (GNNs). We model the table as a heterogeneous graph where columns and values are nodes connected by rows, allowing the GNN to propagate disambiguating context across the structure. Unlike other state-of-the-art methods that require proprietary LLM access and fine-tuning of language models, SemStruct keeps the language model frozen and trains only a lightweight structural encoder. Extensive experiments on the Valentine and SOTAB-SM benchmarks demonstrate that SemStruct achieves state-of-the-art performance, outperforming fully fine-tuned baselines on complex, semantically joinable datasets. Furthermore, our ablation studies reveal that row representations serve primarily as topological conduits rather than semantic entities, validating the necessity of explicit structural modeling in schema matching.

Chain-of-thought (CoT) prompting reliably improves language-model accuracy, but which properties of a rationale text drive the improvement is poorly understood. Prior work has largely studied generation-time behavior. We instead ask a probe-time question: given a fixed rationale in context, what in that text changes the answer? We identify two complementary sources of the gain. First, even a globally word-shuffled rationale substantially outperforms the no-rationale baseline, indicating a strong lexical activation effect. More importantly, the additional gain from structured text appears to arise less from sentence-level logical ordering and more from short-range token adjacency. Preserving contiguous windows of just $n^\star{=}2$--$3$ tokens recovers most of the remaining gain toward full CoT performance. Supporting experiments rule out copying of explicit answer declarations or answer values, as well as full grammatical realization, as primary drivers. Further generalization experiments show that the qualitative pattern remains stable across multiple model families, parameter scales, and datasets. These results support a local co-occurrence activation (LCA) account of probe-time CoT, in which the observed gains appear to arise primarily from lexical activation and short-range token co-occurrence rather than sentence-level logical derivation.

We propose a distributional theory of how hypernymy -- the ``is-a'' relation between general and specific concepts -- is encoded geometrically in language representations. Starting from the empirically verified assumption that words closer on the WordNet hypernym graph co-occur more often, we characterize theoretically the spectrum of the resulting embedding Gram matrix of word2vec embeddings. Under mild positivity and decay conditions on the co-occurrence kernel, we prove that the leading eigenvectors first separate broad taxonomic branches and then progressively finer sub-branches, producing a \emph{hierarchical splitting geometry} with a coarse-to-fine spectral organization that mirrors the tree. We confirm these predictions in word2vec embeddings across many sampled WordNet subtrees, and show that the same signature extends strikingly well to Gemma 2B unembeddings. Our results indicate that hierarchical concept geometry in LLMs need not reflect a hierarchy-specific functional mechanism, but emerges from the spectral structure of pairwise word statistics.

Semantic type mismatch between a noun and its context is central to coercion phenomena. This paper introduces a graph-based method to examine how lexical and contextual type information is reflected in word embeddings. We select nouns from ten semantic types, annotate corpus instances for type matching (matching vs. coercion vs. other mismatch vs. unrestricted), and construct graphs using BERT and sense-enhanced embeddings. Two metrics -- Neighbor Type Probability (NTP) and Neighbor Type Entropy (NTE) -- are proposed to analyze neighborhood type distributions. Results show that graphs constructed with sense-enhanced embeddings reflect semantic type information better, and matching and mismatch sentences can be distinguished through the proposed metrics.

The U.S. financial system processes approximately 1.3 million interbank transactions daily, yet no system in the reviewed literature models fraud propagation across the interbank network using fraud co-occurrence edge features. Prior interbank GNN architectures model credit contagion using credit distress supervision signals, producing systems misaligned for fraud forensics. No existing system generates SAR narratives with per-assertion forensic traceability to specific numerical detection outputs, creating regulatory auditability gaps in FinCEN-submitted reports. This paper introduces SCAFDS (Systemic Contagion-Aware Fraud Detection System), a seven-stage integrated surveillance pipeline addressing five structural limitations of prior art: (1) fraud-specific interbank topology encoding using fraud co-occurrence frequency metrics f(u,v,t) derived from FinCEN SAR registry records; (2) edge-feature-informed graph attention where coefficients are computed from both node representations and fraud co-occurrence edge features; (3) bilinear fraud co-occurrence risk fusion producing institution-level systemic fraud risk scores; (4) attribution-conditioned SAR narrative generation with per-assertion significance thresholds ensuring each FinCEN SAR assertion is traceable to a specific numerical pipeline output; and (5) topology-aware adaptive forensic feedback updating graph attention weights from regulatory dispositions. Experiments on the IEEE-CIS Fraud Detection Dataset (590,540 transactions) and a synthetic FDIC-aligned interbank network (8,103 institutions, 169,800 edges) show SCAFDS achieves AUPRC=0.515+/-0.032 and AUROC=0.802+/-0.018, representing +15.9pp and +13.7pp improvements over GraphSAGE-AML. Partial validation on FDIC enforcement action records (n=4,279) confirms consistent model ranking. USPTO Provisional Patent Application No. 64/061,083, filed May 8, 2026.

Adaptations of features commonly applied in the field of visual computing, co-occurrence matrix (COM) and run-length matrix (RLM), are proposed for the similarity computation of strings in general (words, phrases, codes and texts). The proposed features are not sensitive to language related information. These are purely statistical and can be used in any context with any language or grammatical structure. Other statistical measures that are commonly employed in the field such as longest common subsequence, maximal consecutive longest common subsequence, mutual information and edit distances are evaluated and compared. In the first synthetic set of experiments, the COM and RLM features outperform the remaining state-of-the-art statistical features. In 3 out of 4 cases, the RLM and COM features were statistically more significant than the second best group based on distances (P-value < 0.001). When it comes to a real text plagiarism dataset, the RLM features obtained the best results.

Coreference resolution is typically evaluated using aggregate statistical metrics such as CoNLL-F1, which measure structural overlap between predicted and gold clusters. While widely used, these metrics offer limited diagnostic insights, penalizing errors without revealing whether a system struggles with specific semantic categories, such as people, locations, or events, and making it difficult to interpret model capabilities or derive actionable improvements. We address this gap by introducing a semantically-enhanced evaluation framework for coreference resolution. Our approach overlays Concept and Named Entity Recognition (CNER) onto coreference outputs, assigning semantic labels to nominal mentions and propagating them to entire coreference clusters. This enables the computation of typed scores aimed at evaluating mention extraction and linking capabilities stratified by semantic class. Across our experiments on OntoNotes, LitBank, and PreCo, we show that our framework uncovers systematic weaknesses that remain obscured by aggregate metrics. Furthermore, we demonstrate that these diagnostics can be used to design targeted, low-cost data augmentation strategies, achieving measurable out-of-domain improvements.

This paper tackles compositional personalization of vision-language models (VLMs). In this problem, multiple user-defined concepts must be recognized or described jointly at test time. We introduce Gate-and-Merge, a zero-shot framework that enables compositional personalization without the need for co-occurrence training. During personalization, each concept is learned independently as a lightweight LoRA adapter, paired with a concept token. The base model remains unchanged and concepts are kept disentangled. At inference, we enable composition by merging concept-specific LoRA updates directly in weight space. To suppress irrelevant activations and prevent interference, a gating mechanism is employed to estimate textual and visual cues and select only the modules that contribute to the prediction. We further stabilize composition by combining only the most meaningful and mutually consistent updates, helping preserve each concept's identity. Our quantitative and qualitative analyses show consistent gains in performance across multiple personalization tasks in both single-concept and compositional settings.

Out-of-distribution (OOD) detection is crucial for ensuring the reliability of deep learning models. Existing methods mostly focus on regular entangled representations to discriminate in-distribution (ID) and OOD data, neglecting the rich contextual information within images. This issue is particularly challenging for detecting near-OOD, as models with simplicity bias struggle to learn discriminative features in disentangled representations. The human visual system can use the co-occurrence of objects in the natural environment to facilitate scene understanding. Inspired by this, we propose an Object-Centric OOD detection framework that learns to capture Object CO-occurrence (OCO) patterns within images. The proposed method introduces a new OOD detection paradigm that understands object co-occurrence within an image by predicting disentangled representations for the test sample, then adaptively divides patterns into three scenarios based on object co-occurrence patterns observed in ID training data, and finally performs OOD detection in a divide-and-conquer manner. By doing so, OCO can distinguish near-OOD by considering the semantic contextual relationships present in their images, avoiding the tendency to focus solely on simple, easily learnable regions. We evaluate OCO through experiments across challenging and full-spectrum OOD settings, demonstrating competitive results and confirming its ability to address both semantic and covariate shifts. Code is released at https://github.com/Michael-McQueen/OCO.

Sparse autoencoders (SAEs) have become central to mechanistic interpretability, decomposing transformer activations into monosemantic features. Yet existing analyses characterise features almost exclusively through top-activating token lists or decoder weight vectors, leaving the higher-order co-occurrence structure shared across features largely unexamined. We introduce a graph-structured representation in which each SAE feature is modelled as a token co-occurrence graph: nodes are the tokens most frequent near strong activations, and edges connect pairs that co-occur within local context windows. A custom WL-style, frequency-binned graph kernel then provides a similarity measure over this structural space. Applied as a proof of concept to features from a large SAE trained on GPT-2 Small and probed with a synthetic mixed-domain corpus, our clustering recovers heuristic motif families (punctuation-heavy patterns, language and script clusters, and code-like templates) that are not recovered by clustering on decoder cosine similarity. A token-histogram baseline achieves higher overall purity, so the contribution of the graph view is complementary rather than dominant: it surfaces structural relationships that token-frequency and decoder-weight views alone do not capture. Cluster assignments are stable across graph-construction hyperparameters and random seeds.

We present a semantic-structural atlas of transportation research built from 120{,}323 papers across 34 peer-reviewed journals published between 1967 and 2025, roughly an order of magnitude larger than and a decade beyond Sun and Rahwan's~(2017) coauthorship study. We use OpenAlex and Crossref as open, CC0-licensed data sources, resolve author identity through OpenAlex author IDs, ORCID records, and manual alias resolution, and embed every paper with SPECTER2 with Arora-style whitening concatenated with concept TF--IDF and venue linear-discriminant projections. On this substrate we report three findings. First, Leiden on the author-level semantic k-nearest-neighbor graph yields 23 topic communities that agree only weakly with the 172 coauthor communities (normalized mutual information $0.23$), opening room for a predictive layer that neither source encodes alone. Second, a multiplex Leiden partition combining both edge types recovers 181 communities and localizes where collaboration and topic structure decouple. Third -- the paper's core methodological contribution -- we define \emph{phantom collaborators}, pairs of authors who are top-$K$ semantic neighbors yet $\geq 3$ hops apart in the coauthor graph, and show via a temporal hold-out (training cutoff 2019) that phantom pairs become real coauthors in 2020--2025 at a rate $16$ to $33$ times above random, popularity-weighted, and same-venue baselines, with a $68$-fold monotone gradient between the highest- and lowest-similarity buckets. All artifacts are released as a live, reproducible web atlas at https://choi-seongjin.github.io/transport-atlas/.

Language models trained on natural text learn to represent numbers using periodic features with dominant periods at $T=2, 5, 10$. In this paper, we identify a two-tiered hierarchy of these features: while Transformers, Linear RNNs, LSTMs, and classical word embeddings trained in different ways all learn features that have period-$T$ spikes in the Fourier domain, only some learn geometrically separable features that can be used to linearly classify a number mod-$T$. To explain this incongruity, we prove that Fourier domain sparsity is necessary but not sufficient for mod-$T$ geometric separability. Empirically, we investigate when model training yields geometrically separable features, finding that the data, architecture, optimizer, and tokenizer all play key roles. In particular, we identify two different routes through which models can acquire geometrically separable features: they can learn them from complementary co-occurrence signals in general language data, including text-number co-occurrence and cross-number interaction, or from multi-token (but not single-token) addition problems. Overall, our results highlight the phenomenon of convergent evolution in feature learning: A diverse range of models learn similar features from different training signals.

Sequential Recommendation (SR) aims to predict the next interaction of a user based on their behavior sequence, where complementary relations often provide essential signals for predicting the next item. However, mainstream models relying on sparse co-purchase statistics often mistake spurious correlations (e.g., due to popularity bias) for true complementary relations. Identifying true complementary relations requires capturing the fine-grained item semantics (e.g., specifications) that simple cooccurrence statistics would be unable to model. While recent semantics-based methods utilize discrete semantic codes to represent items, they typically aggregate semantic codes into coarse item representations. This aggregation process blurs specific semantic details required to identify complementarity. To address these critical limitations and effectively leverage semantics for capturing reliable complementary relations, we propose a Complementary-Aware Semantic Transition (CAST) framework that introduces a new modeling paradigm built upon semantic-level transitions. Specifically, a semantic-level transition module is designed to model dynamic transitions directly in the discrete semantic code space, effectively capturing fine-grained semantic dependencies often lost in aggregated item representations. Then, a complementary prior injection module is designed to incorporate LLM-verified complementary priors into the attention mechanism, thereby prioritizing complementary patterns over co-occurrence statistics. Experiments on multiple e-commerce datasets demonstrate that CAST consistently outperforms the state-of-the-art approaches, achieving up to 17.6% Recall and 16.0% NDCG gains with 65x training acceleration. This validates its effectiveness and efficiency in uncovering latent item complementarity beyond statistics. The code will be released upon acceptance.

AI agent systems increasingly rely on reusable non-LLM engineering infrastructure that packages tool mediation, context handling, delegation, safety control, and orchestration. Yet the architectural design decisions in this surrounding infrastructure remain understudied. This paper presents a protocol-guided, source-grounded empirical study of 70 publicly available agent-system projects, addressing three questions: which design-decision dimensions recur across projects, which co-occurrences structure those decisions, and which typical architectural patterns emerge. Methodologically, we contribute a transparent investigation procedure for analyzing heterogeneous agent-system corpora through source-code and technical-material reading. Empirically, we identify five recurring design dimensions (subagent architecture, context management, tool systems, safety mechanisms, and orchestration) and find that the corpus favors file-persistent, hybrid, and hierarchical context strategies; registry-oriented tool systems remain dominant while MCP- and plugin-oriented extensions are emerging; and intermediate isolation is common but high-assurance audit is rare. Cross-project co-occurrence analysis reveals that deeper coordination pairs with more explicit context services, stronger execution environments with more structured governance, and formalized tool-registration boundaries with broader ecosystem ambitions. We synthesize five recurring architectural patterns spanning lightweight tools, balanced CLI frameworks, multi-agent orchestrators, enterprise systems, and scenario-verticalized projects. The result provides an evidence-based account of architectural regularities in agent-system engineering, with grounded guidance for framework designers, selectors, and researchers.

Zero-Shot Compositional Action Recognition (ZS-CAR) requires recognizing novel verb-object combinations composed of previously observed primitives. In this work, we tackle a key failure mode: models predict verbs via object-driven shortcuts (i.e., relying on the labeled object class) rather than temporal evidence. We argue that sparse compositional supervision and verb-object learning asymmetry can promote object-driven shortcut learning. Our analysis with proposed diagnostic metrics shows that existing methods overfit to training co-occurrence patterns and underuse temporal verb cues, resulting in weak generalization to unseen compositions. To address object-driven shortcuts, we propose Robust COmpositional REpresentations (RCORE) with two components. Co-occurrence Prior Regularization (CPR) adds explicit supervision for unseen compositions and regularizes the model against frequent co-occurrence priors by treating them as hard negatives. Temporal Order Regularization for Composition (TORC) enforces temporal-order sensitivity to learn temporally grounded verb representations. Across Sth-com and EK100-com, RCORE reduces shortcut diagnostics and consequently improves compositional generalization.

Recently, significant progress has been made in multi-modal continual learning, aiming to learn new tasks sequentially in multi-modal settings while preserving performance on previously learned ones. However, existing methods mainly focus on coarse-grained tasks, with limitations in addressing modality entanglement in fine-grained continual learning settings. To bridge this gap, we introduce a novel Continual Audio-Visual Segmentation (CAVS) task, aiming to continuously segment new classes guided by audio. Through comprehensive analysis, two critical challenges are identified: 1) multi-modal semantic drift, where a sounding objects is labeled as background in sequential tasks; 2) co-occurrence confusion, where frequent co-occurring classes tend to be confused. In this work, a Collision-based Multi-modal Rehearsal (CMR) framework is designed to address these challenges. Specifically, for multi-modal semantic drift, a Multi-modal Sample Selection (MSS) strategy is proposed to select samples with high modal consistency for rehearsal. Meanwhile, for co-occurence confusion, a Collision-based Sample Rehearsal (CSR) mechanism is designed, allowing for the increase of rehearsal sample frequency of those confusable classes during training process. Moreover, we construct three audio-visual incremental scenarios to verify effectiveness of our method. Comprehensive experiments demonstrate that our method significantly outperforms single-modal continual learning methods. Code can be seen at https://github.com/cqu-student/CAVS-CMR.

Language models (LMs) increasingly drive real-world applications that require world knowledge. However, the internal processes through which models turn data into representations of knowledge and beliefs about the world are poorly understood. To facilitate such studies, we present LMEnt, a suite including (1) a knowledge-rich pretraining corpus, fully annotated with entity mentions based on Wikipedia, (2) an entity-based retrieval method over pretraining data that outperforms existing tools by as much as 80.4%, and (3) 12 pretrained LMs with up to 1B parameters and 4K intermediate checkpoints, with comparable performance to popular open-source models on knowledge tasks. Together, these resources provide a controlled environment for analyzing connections between entity mentions in pretraining data and downstream performance. We show the utility of LMEnt by studying knowledge acquisition over training, finding that entity co-occurrence and mention forms-which are difficult to study with existing tools-affect learning trends. Moreover, as LMs form stronger associations between entities, their facts are harder to edit in-context, whereas inconsistencies in model predictions over training are indicative of editing success. We release LMEnt to support studies of knowledge in LMs, including knowledge representations, plasticity, editing, attribution, hallucinations, and learning dynamics.

Large language models (LLMs) often produce incorrect answers with high confidence, yet the factors associated with such overconfidence remain insufficiently understood. We study this problem through the lens of knowledge popularity. Using entity-centric factual QA derived from Wikidata triplets, we characterize popularity through question entity popularity, answer popularity, and question-answer co-occurrence. We find two consistent patterns. First, hallucinated answers are far from random: compared with ground-truth answers, they tend to be more popular or more frequently associated with the question entity. Second, confidence is strongly tied to the popularity of generated answers: even among incorrect predictions, more popular answers or those with higher question-answer co-occurrence receive higher confidence. Together, these findings suggest that popular but wrong alternatives may contribute to overconfidence. We further show that popularity-related signals can mitigate overconfidence and improve overall confidence estimation. Across six models and three datasets, incorporating knowledge popularity reduces average confidence on incorrect answers from 0.765 to 0.254 and overall ECE from 0.356 to 0.050, while improving Alignment from 77.08% to 83.72%.