Hybrid CNN-Transformer Architectures
Momentum
7 papers in the last four weeks, up 17% on the four weeks before. 0.1% of all new papers.
Latest papers 75
The noise of Magnetic Resonance Imaging MRI poses challenges for Deep Learning DL when tumor boundaries are obscured tumor location and appearance are complex Therefore we develop BrainFusionNet that combines Convolutional Neural Networks CNNs Vision Transformers ViT and Gated Recurrent Units GRUs to extract spatial contextual and sequential features from MRI images for improved brain tumor classification Furthermore explainable AI such as SHAP LIME and GradCAM are integrated to visualise and highlight image regions that contribute to BrainFusionNets decisionmaking process The proposed BrainFusionNet model is evaluated on two publicly available MRI datasets Kfold validation suggests 98 accuracy on both datasets The model was compared with the six stateoftheart SOTA CNNs and transfer learning Among the SOTA CNNs DenseNet121 and VGG16 achieved the highest accuracy of 96 The novelty of BrainFusionNet is that the hybrid model effectively extracts local and global features from MRI images even in smallscale tumor regions and small tumor sizes The model has a balanced sequential CNN architecture to capture lowlevel and deeperlayer features a customized ViT that captures local features stabilizes gradient flow and reduces the risk of vanishing gradients during MRI image training The CNN and ViT outputs are fed into a GRU for final classification Furthermore we analyze pixel intensities to determine whether MRI image quality affects image classification Our findings are very novel in image interpretation as we found that the distribution of pixel intensities in MRI images affects DL performance
Protein-Based Fish Species Identification: Dataset, Models, and Insights from Native Bangladeshi Fish
Correct identification of fish species is highly significant for food security, economic development, and climate resilience in Bangladesh. Protein sequences directly reflect functional and evolutionary constraints which are important for species authentication and biodiversity monitoring. Yet there exists no benchmark for native Bangladeshi fish species identification from protein sequence. In this study, we addressed this gap by introducing the first curated dataset for nine native Bangladeshi fish species of 2845 high quality protein sequences. We also established the first protein sequence classification baseline for this domain through a systematic benchmarking of seven architectural paradigms. Moreover, we propose a realistic deployable novel hybrid architecture of MotifCNN and Transformer with Terminal-Aware Positional-Encoding (MotifCNN-Transformer+TA-PE). Our novel architecture achieves 79.80% accuracy with macro-F1 of 0.80. The highest 83.04% accuracy is achieved by finetuned protein language model ProtBERT that has 420M parameters and requires dual 16GB GPUs for inference. According to McNemar's test, ProtBERT's 3.24% accuracy gain over our MotifCNN-Transformer+TA-PE is statistically insignificant (p = 0.1120). Our novel architecture beats it among six of the nine classes in per class identification. Also our MotifCNN-Transformer+TA-PE is approximately 5x faster, 42x smaller, and supports 16x larger batch size than ProtBERT and has GPU free inference, making it more practical for deployment in resources constrained areas such as rural Bangladesh. Beyond this, our foundational work shows effects of phylogenetic relationships on sequence similarity and establishes pathways for fisheries management, food authentication and biodiversity conservation in South Asia's protein dependent economy.
Enhancing Precision Agriculture with a Hybrid Deep Learning Framework for Multi-Class Plant Disease Classification and Interpretability
This study proposes an overall deep learning architecture for multi-class classification of plant diseases from high-resolution leaf imagery, with a particular interest in investigating the behavior of ResNet-50 and a hybrid ResNet + Vision Transformer (ViT) design. A specially gathered image database with 15,200 training images and 3,800 validation images spanning 38 classes across multiple crops, including tomato, apple, grape etc. were subjected to preprocessing steps such as resizing, normalization, and data augmentation to enhance model robustness. Multiple architectures, including ResNet-50, MobileNetV2, and EfficientNet-B0, were trained and compared with the hybrid ResNet + ViT model. All models were fine-tuned using the AdamW optimizer and cross-entropy loss, with early stopping applied to prevent overfitting and ensure generalization. Furthermore, interpretability techniques such as Grad-CAM and saliency maps were implemented to indicate disease-relevant regions, while segmentation-based analysis was performed to identify the affected parts of a leaf. For every one of the considered architectures, ResNet-50 led to the highest accuracy of 98.74%, whereas the hybrid ResNet + ViT model achieved a competitive accuracy of 98.58%, showing that the hybrid architectures were effective in capturing both local and overall information. The experimental results showcase the promise of transformer-based models to achieve highly accurate, interpretable, and computationally efficient computer-based multi-class multi-disease classification systems, providing helpful assistance for cultivation management practices as well as for precision farming.
FAConformer: Frequency-Aware Convolutional Transformer for Auditory Attention Decoding
Auditory attention decoding (AAD) aims to infer the attended speaker from neural responses in multi-speaker acoustic environments and is a key problem for neuro-steered hearing systems. Although recent studies have achieved encouraging progress, existing AAD models still do not fully exploit frequency domain electroencephalography (EEG) information. In particular, most approaches introduce multi-band information through handcrafted feature extraction or direct cross-band feature concatenation, which mainly exploit frequency information at a shallow level and may overlook band-specific patterns and cross-band interactions. To address these limitations, this paper proposes FAConformer, a frequency-aware CNN-Transformer framework for AAD that explicitly integrates band-specific encoding and adaptive cross-band interaction. Specifically, FAConformer first decomposes EEG signals into multiple frequency bands and assigns each band to an independent CNN-Transformer encoder for band-specific modeling. The resulting band-wise features are then adaptively fused by a carefully designed frequency-aware attention (FAA) module that models cross-band dependencies by treating band-wise features as tokens. Further, band-wise auxiliary supervision (BAS) is introduced to prevent weakly contributing branches from being under-optimized during joint training. In this way, FAConformer performs frequency-aware modeling that more effectively exploits frequency domain information. Extensive experiments on two public AAD datasets with three decision-window lengths demonstrated that FAConformer consistently outperformed 12 competitive baselines, surpassing the current state-of-the-art model by 4.9%. Further analyses of band importance, ablation, and parameter sensitivity verify the effectiveness, robustness, and interpretability of the proposed framework. Code is available at https://github.com/wzwvv/FAConformer.
Clay-CNN Hybrids: Leveraging Geospatial Foundation Models as Auxiliary Context for Landslide Detection
Rapid post-event landslide mapping is essential for disaster response but remains difficult to automate due to extreme class imbalance. This study evaluates whether Clay v1.5, a Geospatial Foundation Model (GFM), can improve pixel-level landslide segmentation on the Landslide4Sense (L4S) benchmark, which contains 3,799 training chips with 14 Sentinel-2 and terrain bands and approximately 2% positive pixels. We compare three strategies: Clay as the primary encoder with multi-scale residual terrain fusion, a U-Net backbone augmented with Clay semantic context at the bottleneck, and a standard U-Net baseline. The hybrid U-Net + Clay model with two-stage Low-Rank Adaptation (LoRA) achieved the best test F1 of 64.5 +/- 1.8% over three seeds, surpassing the Clay-only backbone (55.2 +/- 3.6%) and the U-Net baseline (59.9%). Clay as a standalone encoder underperformed the U-Net due to the absence of multi-scale skip connections, but its pretrained representations consistently improved performance when injected as auxiliary context. These findings suggest that GFMs are most effective for landslide detection when they complement spatially detailed convolutional architectures rather than replace them.
Binary Black Hole Parameter Estimation with Hybrid CNN-Transformer Neural Networks
The detection of gravitational waves has revolutionized our ability to explore fundamental aspects of the Universe. Traditionally, modeled gravitational-wave signals have been identified using template-based matched filtering, followed by coincidence analysis across multiple detectors in the signal-to-noise ratio time series. Recent advances in Machine Learning and Deep Learning have sparked growing interest in their application to both signal detection and parameter estimation. In this study, a hybrid Deep Learning strategy is proposed that leverages the effectiveness of Transformer encoders alongside well-established Convolutional Neural Network architectures in an attempt to estimate the intrinsic and extrinsic parameters of non-precessing binary black hole systems. The primary focus of this work is point estimation, producing single best-fit values for each parameter rather than full posterior distributions. This method is evaluated on both simulated signals embedded in Gaussian noise and real gravitational-wave events, and it demonstrates strong predictive performance and robustness across key astrophysical parameters.
PENet+: A Lightweight Residual Transformer Framework for Efficient Image Steganalysis
Image steganalysis, the detection of hidden information embedded in digital images, is a core component of modern cybersecurity and digital forensics. Recent residual Transformer architectures, such as the Pixel-Difference-Convolution and Enhanced-Transformer-Network (PENet) [1], achieve strong detection accuracy, but their computational and memory demands hinder deployment in resource-constrained settings. We present PENet+, a lightweight steganalysis framework that preserves PENet's discriminative structure while substantially improving efficiency. Rather than redesigning or compressing the attention blocks, we retain PENet's self-attention topology for reproducibility and add a classifier-streamlining stage that progressively narrows the SPP-to-FC1 input channels (SPP: spatial pyramid pooling; FC1: first fully connected layer), yielding large reductions in parameters and FLOPs with negligible accuracy loss. We further refine the high-pass-filter (HPF) stem with an activation-aware mechanism that aggregates HPF responses early and selects a balanced SRM-Gabor top-K subset, and we replace PENet's backbone with a MobileNetV2-style inverted residual network. A balanced configuration with K=31 filters (16 Gabor + 15 SRM) matches or surpasses heavier settings at lower compute. Finally, we motivate PReLU from a steganalysis standpoint, arguing that preserving negative responses helps capture weak stego cues that ReLU suppresses. On a disjoint ALASKA2 JPEG QF90 protocol at 512x512 resolution (5,000 cover images for training, validation, and internal testing; a separate 19,000-cover evaluation set), PENet+ achieves up to 45.5% fewer parameters and about 97% fewer FLOPs than the re-evaluated PENet baseline, offering a computationally efficient direction for resource-constrained steganalysis. Device-level latency and power measurements remain future work.
Towards Robust Arabic Speech Emotion Recognition with Deep Learning
Speech Emotion Recognition (SER) aims to identify a speaker's emotional state from audio signals. While recent advances in deep learning have significantly improved SER performance in Indo-European languages, Arabic SER remains underexplored and challenging due to dialectal diversity, limited annotated datasets, and the difficulty of modeling both local spectral cues and long-range temporal dependencies. To address these limitations, this study investigates whether hybrid architectures that jointly model spatial and contextual information can improve emotion recognition in Arabic speech. We propose and evaluate a comparative framework involving three architectures: a CNN-LSTM model, a CNN-Transformer model, and a fine-tuned wav2vec 2.0 model. The first two models leverage MFCC and spectrogram-based representations, while wav2vec 2.0 operates directly on raw audio through self-supervised representations. Experiments conducted on the EYASE and BAVED datasets demonstrate that the proposed CNN-Transformer architecture significantly outperforms the other models, achieving an accuracy of 98.1 percent. This result highlights the effectiveness of combining convolutional feature extraction with Transformer-based global context modeling. The main contribution of this work lies in providing a systematic comparison of hybrid and self-supervised approaches for Arabic SER, and in demonstrating that CNN-Transformer architectures offer a robust solution for capturing both spectral and long-range dependencies in low-resource and dialectally diverse settings.
BMCR: Adaptive Backbone Module Composition via Reinforcement Learning for Remote Sensing Object Detection
In remote sensing object detection, Convolutional Neural Networks (CNNs) excel at capturing local details while Vision Transformers (ViTs) are better at global context modeling. However, existing detectors typically rely on a single fixed backbone or a manually designed hybrid architecture, and thus fail to adaptively exploit these complementary strengths across inputs of diverse complexity. To address this limitation, we propose Backbone Module Composition via Reinforcement Learning (BMCR). BMCR dynamically assembles input-adaptive inference paths from reusable modules decomposed from off-the-shelf CNN and ViT backbones. To enable such cross-family composition, we first construct an extensible module toolbox. Specifically, we decompose representative CNN and ViT backbones into reusable functional modules and encapsulate each module with explicit structural, semantic, and computational metadata for compatibility-aware assembly. To bridge the gap between grid-based CNN features and token-based ViT representations, we design a lightweight Optimal Transport (OT) based transition interface that ensures distribution-aware alignment while respecting spatial consistency. The backbone composition process is then formulated as a sequential decision problem, in which a policy network progressively selects task-relevant modules according to intermediate multi-scale observations. To stabilize the joint optimization of reusable modules and the routing policy, we further develop an Adaptive Module Cooperative Optimization (AMCO) strategy that coordinates module updating, routing exploration, and reward assignment during training. On DOTA-v1.0, DOTA-v1.5 and DIOR-R, BMCR achieves 79.31%, 73.41% and 71.86% mAP, respectively, surpassing strong static and dynamic baselines by up to 2.5 points while maintaining competitive efficiency.
EEG-FuseFormer: A Transformer-Driven Feature Fusion Framework for Seizure Onset Prediction
Epilepsy is one of the most common neurological disorders globally, characterized by recurring seizures and significantly impacting the quality of life. Despite advancements in diagnostic techniques, the mitigation of risks faced by epilepsy patients remains challenging due to the unpredictability of seizure events. An accurate forecast of seizure onset helps to reduce risks in epilepsy patients. In this paper, we propose EEG-FuseFormer, a transformer-based feature fusion framework for seizure-onset prediction that combines intermediate features extracted from Convolutional Neural Networks-Long Short-Term Memory (CNN-LSTM) and ResNet-18 networks. The CNN-LSTM architecture captures both spatial and temporal features directly from the raw signal, whereas the ResNet-18 extracts features from the Short-Time Fourier Transform (STFT) representation of the EEG signals. Fusion is carried out using a transformer encoder, and the final prediction is generated using fully connected dense layers. The CHB-MIT dataset was used to validate the proposed model. The results show that the proposed model achieves a mean recall of 98.85% and outperforms most of the state-of-the-art methods. This study evaluates the ability of the proposed feature fusion model to generalize in cross-patient testing scenarios. Fine-tuning pre-trained models on limited target patient data (target adaptation) within the cross-patient validation framework results in higher recall, precision, and F1-score metrics in comparison to the conventional cross-patient validation approach. Finally, the runtime-based computational complexity of the model is assessed across diverse hardware platforms to highlight the performance-complexity trade-off.
LALE: Lightweight-Transformer Architecture for Land-Cover Estimation
Semantic segmentation of remote sensing imagery requires models that capture both global context and local detail under tight computational budgets. Prior work typically optimizes for one of these axes: attention for global context, convolution for local detail, or compactness for efficiency. While hybrid approaches aim to capture both, they require architectural changes and encoder backbones with computational overhead, limiting efficiency and performance. We present LALE (Lightweight-transformer Architecture for Land-cover Estimation), an end-to-end remote sensing image segmentation architecture, that bifurcates its encoder by resolution: lightweight ConvMixer stages handle high-resolution local features, while transformer stages handle low-resolution global context, confining the quadratic cost of self-attention to deep, downsampled feature maps. An all-MLP multi-scale decoder, together with RMSNorm and StarReLU throughout, further reduces compute and parameter count. On the large-scale ARAS400k remote-sensing segmentation benchmark, LALE establishes a strong efficiency-performance trade-off against CNN, transformer, and hybrid baselines. Our smallest variant, (just 1.6M parameters), reaches within 2.6 F1 points of the best baseline (UPerNet) while using 4.5x fewer parameters, 7x less storage, 17x fewer GMACs, and delivering 1.8x higher throughput. The codebase for LALE is publicly available at https://github.com/caglarmert/LALE.
AMN: An Adaptive Multi-Scale Fusion Network with Boundary and Uncertainty Modeling for Nuclei Segmentation
Accurate classification of nuclei subtypes in histopathology images is critical for downstream tasks including tumor grading, immune infiltrate quantification, and prognosis prediction. Existing approaches rely on either convolutional or transformer-based encoders in isolation, limiting their ability to simultaneously capture fine-grained local texture and long-range spatial context. We present AMN (Adaptive Multi-Scale Nuclei Network), a dual-encoder segmentation framework that jointly leverages a Swin Transformer and a ResNet-50 feature pyramid, fused via a learned per-channel gating mechanism that dynamically weighs each encoder's contribution at every scale. AMN is trained with a multi-objective loss combining class-weighted focal loss, boundary-aware loss with positive-pixel emphasis, and a novel uncertainty-modulated classification term that suppresses overconfident erroneous predictions. Evaluated on the CoNIC benchmark across seven nuclei classes, AMN achieves a mean Dice of 0.82 and mean F1 of 0.68, with an F1 of 0.67 on the diagnostically challenging lymphocyte class. AMN outperforms eight baseline models spanning pure-CNN, pure-transformer, and recent hybrid architectures: U-Net, ResU-Net, DeepLabV3+, SegNet, ViT-Small, HmsU-Net, ConvFormer-UNet, and BEFUnet. Cross-dataset evaluation on MoNuSeg demonstrates strong generalization without retraining and validating the domain robustness of the learned representations.
PolSAR Image Classification using a Hybrid Complex-Valued Network (HybridCVNet)
Recently, convolutional neural networks (CNNs) have become popular for image classification due to their effectiveness in computer vision tasks. Now, researchers are exploring the potential of vision transformers (ViTs) in remote sensing and Earth observation. However, traditional Real-Valued networks often overlook important phase information in Complex-Valued (CV) data like polarimetric synthetic aperture radar (PolSAR) data. To address this, new CV deep architectures have emerged. HybridCVNet, a novel hybrid network, blends CV-CNN and CV vision transformer (CV-ViT) techniques. It efficiently combines CV 3D and 2D CNNs as feature extractors, enhancing PolSAR image classification by extracting complementary information and effectively leveraging interdependencies within the data. Experimental results from widely-used PolSAR datasets show HybridCVNet outperforms other methods, achieving an overall accuracy of 97.39% on the Flevoland dataset and showing promise even with just a 1% sampling ratio, with a Kappa value of 0.972 on the San Francisco dataset. Source code is accessible through https://github.com/mqalkhatib/HybridCVNet
ConTrans: Learning Text-enhanced Local-global Temporal Representations for Zero-shot Temporal Action Localization
Zero-shot Temporal Action Localization (ZS-TAL) aims to detect and locate previously unseen actions in untrimmed videos. However, existing approaches primarily focus on modeling long-range contextual information, often neglecting the critical relative-offset-based local correlations between video frames. Furthermore, their performance is hindered by limited feature representation capabilities due to the shallow nature of their network architectures. In this paper, we address these limitations by introducing a novel local-global multi-scale feature representation module. We propose a novel multi-scale encoder architecture, termed ConTrans, that integrates convolutional (Conv) inductive biases with transformer Self-attention to jointly capture fine-grained local dependencies and long-range global context, leading to more comprehensive feature representations than existing methods. Experimental evaluations on the ActivityNet-1.3 and THUMOS14 datasets demonstrate that ConTrans significantly outperforms existing methods, establishing a new benchmark for ZS-TAL.
SwInception -- Local Attention Meets Convolutions
Sparse vision transformers have gained popularity as efficient encoders for medical volumetric segmentation, with Swin emerging as a prominent choice. Swin uses local attention to reduce complexity and yields excellent performance for many tasks but still tends to overfit on small datasets. To mitigate this weakness, we propose a novel architecture that further enhances Swin's inductive bias by introducing Inception blocks in the feed-forward layers. The introduction of these multi-branch convolutions enables more direct reasoning over local, multi-scale features within the transformer block. We have also modified the decoder layers in order to capture finer details using fewer parameters. We demonstrate a performance improvement on eleven different medical datasets through extensive experimentation. We specifically showcase advancements over the previous state-of-the-art backbones on benchmark challenges like the Medical Segmentation Decathlon and Beyond the Cranial Vault. By showing that the existing inductive bias in Swin can be further improved, our work presents a promising avenue for enhancing the capabilities of sparse vision transformers for both medical and natural image segmentation tasks. Code and pre-trained weights can be accessed at https://github.com/Eiphodos/SwInception.
Accelerating HEVC Intra Partitioning via a CNN-Hierarchical Attention Transformer Hybrid
The recursive quad-tree partitioning in High Efficiency Video Coding (HEVC) incurs considerable computational overhead, with exhaustive rate-distortion optimization for CTU partition prediction consuming the dominant share of encoding time. Although partition prediction through deep learning has emerged as a viable encoding accelerator, an architectural dichotomy remains largely unaddressed: CNNs are computationally efficient but spatially myopic due to their localized effective receptive fields, failing to capture long range semantic relationships and repetitive textures; conversely, transformer based architectures are better at capturing global context but incur prohibitive CPU latency, a critical liability that impedes deployment which is predominantly CPU-bound. This paper introduces Hybrid Fast Vision Transformer (HFViT), a hybrid architecture designed to accelerate HEVC intra-mode partition prediction. HFViT fuses a reparameterized depthwise-separable convolutional backbone with a Hierarchical Attention Transformer (HAT) mechanism, leveraging a carrier token scheme to enable efficient global information propagation at sub-quadratic complexity. Post-training structural fusion collapses batch normalization into preceding layers to further reduce latency. Comprehensive evaluation reveals the efficacy of HFViT in accelerating HEVC intra-encoding across resolutions. On standard JCT-VC test sequences, HFViT reduces the average VMAF BD-rate penalty by 2.4, 2.6, and 7.9 percentage points on Classes A, B and E, respectively, as compared to the competing ETH-CNN baseline while maintaining CPU inference latency within 8% of the CNN baseline and surpassing it on GPU by 40%, establishing practical viability for real-time encoder integration.
A Two-Scan Deep Learning Model for Predicting Dementia in Mild Cognitive Impairment
Predicting which people with mild cognitive impairment (MCI) will develop dementia matters for starting treatment early, yet computational work on structural brain imaging has relied almost entirely on a single scan. We propose TAFNet, a temporal attention fusion network that combines a baseline and a follow-up T1-weighted scan. A pretrained Siamese encoder represents each scan, and a fusion module combines the two through anatomical difference, cross-temporal attention and joint context, mixed by a learned per-patient gate. We evaluate it on paired scans from participants with MCI in the Alzheimer's Disease Neuroimaging Initiative, taken up to two years apart, with a dementia diagnosis within three years of the first scan as the outcome. The evaluation is designed to hold up under scrutiny: conversion is defined from recorded diagnoses, the pretraining pool shares no participants with the evaluation cohort, a held-out test partition is kept apart from model development, and uncertainty is estimated by resampling participants. TAFNet discriminates converters from non-converters well on the held-out partition. It outperforms conventional single-scan networks and a model that subtracts the two scans; both differences are significant in cross-validation and have the same direction on the smaller held-out partition. With everything else held fixed, adding the follow-up scan gives a significant gain in cross-validation. Against a recurrent CNN-LSTM baseline built on the same encoder, TAFNet performs comparably, with neither model consistently ahead. Operating points chosen on validation data, in place of the default threshold, give high sensitivity at a clinically reasonable specificity.
ChWDTA: Channel-wise Wavelet-Domain Transformer Attention and Entropy Modeling for Learned Image Compression
State-of-the-art learned image compression (LIC) schemes are increasingly based on hybrid CNN-transformer architectures. To further improve rate-distortion performance, we introduce channel-wise wavelet transforms into both the transformer and entropy-coding components. First, we propose a channel-wise wavelet-domain transformer attention (ChWDTA) mechanism. ChWDTA keeps the efficient windowed spatial self-attention used in modern LIC backbones, but computes the Q/K/V projections on channel-wise wavelet-transformed features before mapping the attention output back with the inverse transform. The resulting Channel-wise Wavelet-Domain Transformer Block (ChWDTB) therefore preserves the spatial tokenization pattern of windowed attention while sparsifying the channel covariance seen by the attention projections. Second, in the entropy-coding stage, we introduce a channel-wise wavelet packet (ChWP) decomposition that produces four equal-sized subbands, which better fit channel-wise slice-based autoregressive entropy modeling. When each channel-wise subband is divided into two slices, we use eight slices for entropy coding. With this configuration, the proposed scheme obtains BD-rate reductions of -17.82%, -19.15%, and -22.56% on the Kodak, CLIC Professional Validation, and Tecnick test sets, respectively. Even when each channel-wise subband is coded as a single slice, the scheme still retains most of the coding gains with lower complexity. The results confirm the advantage of introducing wavelet transform in CNN-transformer-based LIC schemes.
CNNs, Transformers, Hybrid, and Vision Language Models for Skin Cancer Detection
Skin cancer is a common and fast rising malignancy worldwide. Early detection is critical for improving outcomes. Deep learning models trained on dermoscopic and clinical images can support automated and fast triage. However, many studies evaluate only a limited set of architectures. Experimental setups also vary across studies. In this paper, we present a unified evaluation of twelve deep learning models for binary skin cancer detection on the PAD-UFES-20 dataset. The models span four families: convolutional neural networks (CNN), vision transformers (ViT), hybrid convolution transformer backbones, and vision language models (VLM). Performance is assessed using AUC, the maximum F1 score with its precision and recall, and sensitivity at 80% specificity, reflecting screening oriented requirements. Our results show that well tuned CNNs already provide strong baselines, but transformer based families consistently improve discrimination. Hybrid models (MaxViT Tiny, CoAtNet0) and a SigLIP based VLM achieve the best overall trade off between ranking performance and clinically relevant operating points, while CLIP based model offers high precision. The full codebase for all experiments is publicly released. Together, these findings offer practical guidance on which model families are most suitable for real world deployment in skin cancer screening and establish a reproducible reference point for future work on PAD-UFES-20.
Benchmarking Convolutional, Transformer, Hybrid, and Vision Language Models for Multi Disease Retinal Screening
Modern deep learning offers powerful tools for automated retinal screening, but it remains unclear how different visual model families compare in realistic multi-disease settings and under domain shift. In this work, we benchmark twelve architectures across four model families: convolutional neural networks, vision transformers, hybrid CNN-transformer backbones, and vision-language models, using the Retinal Fundus Multi-disease Image Dataset (RFMiD). We evaluate two tasks: binary screening for any retinal disease and multi-label classification across 28 disease classes. Using standardized training, calibration, and evaluation protocols, we report AUC, F1, precision, recall, and sensitivity at a clinically relevant operating point with specificity near 80%. On RFMiD, all architectures perform well on binary screening, with AUC above 84%, but attention-based models perform best. SwinTiny and the hybrid CoAtNet0 and MaxViTTiny models achieve the strongest binary screening results and improve macro and micro F1 in the multi-label setting. Vision-language models, including CLIP ViT-B/16 and SigLIP-Base384, are competitive with CNN baselines but do not surpass the best transformer and hybrid backbones. In external validation on Messidor-2 for referable diabetic retinopathy, AUC ranges from 66.8% to 84.7%, with hybrid and transformer models again showing strong performance. These results provide a reproducible reference for model selection in multi-disease retinal screening and guide future automated screening tools for clinical deployment.
HRVConformer: Neonatal Hypoxic-Ischemic Encephalopathy Classification from the Heart Rate signals
This paper presents the HRVConformer, a novel deep learning architecture for the classification of hypoxic-ischemic encephalopathy (HIE) using the instantaneous heart rate (HR) signal. Unlike conventional approaches that rely on handcrafted features, HRVConformer directly processes raw HR signals in an end-to-end manner, capturing both local and long-range dependencies through a hybrid Convolution-Transformer framework. By integrating convolutional layers for local feature extraction and Transformer-based attention mechanisms for global context modelling, the architecture effectively enhances signal representation and classification performance. The model was trained using supervised learning on a large HR dataset consisting of 1,573 one-hour epochs, including 259 one-hour expert-annotated epochs and a substantial set of weakly labelled data. A 314-hour validation set provided a robust performance estimation, while an independent 215-hour dataset with expert annotations was reserved for final testing. HR signals were extracted from electrocardiogram (ECG) recordings using an improved Pan-Tompkins algorithm, which significantly enhanced both signal quality and data availability. Experimental results demonstrate that the HRVConformer achieves an AUC of 83.23% and accuracy of 74.56% on the test set. These results surpass the performance of the Transformer, ResNet50 and fully convolutional networks baselines, highlighting the advantages of integrating convolutional and Transformer-based components for HR-based HIE classification. The proposed method provides a promising step toward a more accurate and automated assessment of HIE using HR signals. The code is available at: https://github.com/syu-kylin/HRVConformer.
TinyFormer: Preserving Tiny Objects in YOLO-DETR Hybrid Real-time Detectors
YOLO-series and DETR-based detectors struggle with tiny-object detection. YOLO-style models benefit from efficient dense prediction, but their large-stride backbones may suppress tiny instances in deep feature maps and make grid assignment ambiguous. DETR-based models remove hand-crafted post-processing through set prediction, yet they reason over coarse token grids, where tiny objects occupy only a few weak tokens and are easily overlooked during matching. To address these limitations, we propose TinyFormer, a unified YOLO--DETR hybrid real-time detector that combines ViT representations, NMS-free set prediction, and a YOLO-style pyramid neck for accurate small-object detection. TinyFormer introduces a Parallel Bi-fusion Module (PBM), which builds high-resolution shortcuts from shallow stages to the feature pyramid, preserving fine spatial details during multi-scale fusion. We further design a Spatial Semantic Adapter (SSA) to compensate for the spatial loss caused by coarse tokenization. SSA extracts high-resolution cues from early stages and injects them into transformer token embeddings, improving tiny-object localization without sacrificing the global modeling ability of DETR. Experiments on MS COCO show that TinyFormer consistently outperforms recent YOLO-series detectors and the strong DEIMv2 baseline. TinyFormer-X achieves 58.4% AP even without PBM, while adding PBM improves the overall AP to 58.5% and brings a 1.6% AP gain on small objects. With Objects365 pre-training, TinyFormer-X-PBM reaches 60.2% AP, surpassing RF-DETR and other Objects365-pretrained detectors with fewer parameters and lower computation. These results demonstrate that TinyFormer bridges dense YOLO-style feature fusion and DETR-style set prediction, providing a strong accuracy-efficiency trade-off for real-time tiny-object detection. Code is available at https://github.com/mmpmmpmmpjosh/TinyFormer.
Long-horizon prediction of three-dimensional wall-bounded turbulence with CTA-Swin-UNet and resolvent analysis
Long-horizon prediction of three-dimensional (3D) wall-bounded turbulence with machine-learning methods remains a challenging task, due to the rapid accumulation of autoregressive errors and the substantially computational cost. To address these challenges, we present a hybrid machine-learning framework, in which a channel-time-attention Swin-UNet (CTA-Swin-UNet) and a multi-time-scale fusion correction (MTFC) strategy are developed to predict the turbulent flow fields in a wall-parallel plane, with affordable computational cost. Then, 3D flow fields are reconstructed via a resolvent-based spectral linear stochastic estimation (SLSE), rooting from the predicted planar flow. Results show that the CTA-Swin-UNet outperforms the baseline models (LSTM, FNO and traditional Swin-UNet) in both single-step prediction and autoregressive rollouts, indicating the effectiveness of introducing the CTA module into the Swin-UNet architecture. At the same temporal interval, the CTA-Swin-UNet remains stable for approximately 150 rollout steps, while the baseline models fail within 20 to 50 rollout steps. After introducing the MTFC strategy, a longer horizon upto 300 steps is achieved. Using the resolvent-based SLSE reconstruction further recovers the 3D flow structures and energy spectral distributions from the predicted planar inputs, which demonstrates that the proposed framework provides an effective and computationally efficient approach for long-horizon autoregressive prediction of 3D wall-bounded turbulence.
Vision Transformer-Conditioned UNet for Domain-Adaptive Semantic Segmentation
Semantic segmentation is essential for analysing anatomical features in biomedical research, yet a performance gap remains for Vision Transformers (ViTs) in the field, particularly for sparse, fine-structured, and low signal-to-noise targets. We attribute this challenge in part to the lightweight pixel decoders commonly used in promptable ViT models, who may lack the local inductive bias needed for high-precision biomedical masks. We bridge this gap by introducing ViTC-UNet, which conditions a UNet on frozen pre-trained ViT representations through learnable tokens and a two-way attention decoder. This combines ViT global visual priors with the local inductive bias and high-resolution decoding capacity of UNets, while avoiding end-to-end ViT fine-tuning even in cross-domain settings. ViTC-UNet outperforms baseline results in semantic segmentation tasks across MRI and CT modalities, demonstrating that structure-conditioned UNet decoding can efficiently adapt large-scale visual priors to high-complexity biomedical segmentation.
USEMA: a Scalable Efficient Mamba Like Attention for Medical Image Segmentation
Accurate medical image segmentation is an integral part of the medical image analysis pipeline that requires the ability to merge local and global information. While vision transformers are able to capture global interactions using vanilla self-attention, their quadratic computational complexity in the input size remains a struggle for medical image segmentation tasks. Motivated by the dispersion property of vanilla self-attention and recent development of Mamba form of attention, Scalable and Efficient Mamba like Attention (SEMA) utilizes token localization via local window attention to avoid dispersion and maintain focusing, complemented by theoretically consistent arithmetic averaging to capture global aspect of attention. In this work, we present USEMA, a hybrid UNet architecture that merges the local feature extraction ability of convolutional neural networks (CNNs) with SEMA attention. We conduct experiments with USEMA across a variety of modalities and image sizes, demonstrating improved computational efficiency compared to transformer based models using full self-attention, and superior segmentation performance relative to purely convolution and Mamba-based models.
InfiltrNet: Dual-Branch CNN-Transformer Architecture for Brain Tumor Infiltration Risk Prediction
Gliomas are aggressive brain tumors that infiltrate surrounding tissue beyond the visible tumor margins observed on Magnetic Resonance Imaging (MRI). Predicting the spatial extent of this infiltration is essential for surgical planning and radiation therapy, yet existing deep learning approaches focus on segmenting the visible tumor rather than estimating infiltration risk in the surrounding tissue. This paper presents InfiltrNet, a novel dual-branch architecture that combines a convolutional neural network (CNN) encoder with a Swin Transformer encoder through cross-attention fusion modules to predict three-zone infiltration risk maps from multimodal MRI. A label generation strategy based on distance transforms is proposed to derive reproducible infiltration risk zones from standard Brain Tumor Segmentation (BraTS) annotations. InfiltrNet is trained with a combined Dice-CrossEntropy and boundary-aware loss augmented by auxiliary supervision heads at intermediate decoder levels. Extensive experiments on BraTS 2020 and BraTS 2025 demonstrate that InfiltrNet outperforms five established baselines. Explainability analysis using GradCAM++ and Occlusion sensitivity confirms that the model attends to clinically relevant peritumoral regions.
Deep neural networks with Fisher vector encoding for medical image classification
Orderless encoding methods have shown to improve Convolutional Neural Networks (CNNs) for image classification in the context of limited availability of data. Additionally, hybrid CNN + Vision Transformers (ViT) models have been recently proposed to address CNN locality bias issues. These models outperformed CNN-only approaches. Despite that, the integration of such hybrid models with more elaborated feature representation can be highly beneficial and remains large unexplored in the literature. In this context, we propose the introduction of an orderless encoding method, Fisher Vectors, to hybrid CNN + ViT architectures, aiming at achieving a model suitable for both small and large datasets. Such enconding method relies on estimating a Gaussian Mixture Model (GMM) on image features. In large datasets, computational costs of the GMM estimation is a limiting factor for the application of Fisher Vectors. Thus, we propose a method to limit the growth of GMM estimation costs as we increase the size of the dataset. We explore the feasibility of our method in the context of medical image classification by appling it to MedMNIST (v2), Clean-CC-CCII and ISIC2018. This collection of datasets contains a wide variety of data scales and modalities. We outperform benchmark results in all MedMNIST (v2) datasets and obtain literature-competitive results in Clean-CC-CCII and ISIC2018.
CNN-based Multi-In-Multi-Out Model for Efficient Spatiotemporal Prediction
Recently, Convolutional Neural Network (CNN) or Transformer architecture based models have been proposed to overcome the limitations of Recurrent Neural Network (RNN) based models in spatiotemporal prediction. These models prevent the inefficiency of parallelization limitation due to the sequential properties and stacked error due to the recursive method, and show high performance. Novertheless, there are still some challengies. First, CNN based models have difficulty considering global information due to the local properties of the kernel, and their performance is limited. In addition, information is mixed because the time axis is combined with the channel axis of the image for processing. Models based on Transformer architecture have high complexity due to the self-attention calcuation and take a long training time. In this paper, we propose a new structure model called CNN-based Multi-In-Multi-Out model for Efficient Spatiotemporal Prediction (MIMO-ESP) to overcome these limitations. MIMO-ESP considers global information and significantly improves complexity by configuring a Transformer architecture based on CNN. In addition, it treats the time axis as an independent axis without combining it, and effectively considers spatiotemporal information together by applying dilation. This structure makes MIMO-ESP efficient and high performance. Extensive experiment results on three promising benchmark datasets which including video, traffic, and precipitation prediction tasks demonstrate that the usefulness of MIMO-ESP due to the achieved competitive efficiency while outperforming existing models. Furthermore, the ablation study results demonstrate the usefulness of the components of MIMO-ESP, emphasizing the potential of the proposed approaches.
A Synergistic CNN-Transformer Network with Pooling Attention Fusion for Hyperspectral Image Classification
In the hyperspectral image (HSI) classification task, each pixel is categorized into a specific land-cover category or material. Convolutional neural networks (CNNs) and transformers have been widely used to extract local and non-local features in HSI classification. Recent works have utilized a multi-scale vision transformer (ViT) to enhance spectral feature capture and yield promising results. However, most existing methods still face challenges in the effective joint use of spatial-spectral information and in preserving information across layers during the propagation process. To address these issues, we propose a synergistic CNN-Transformer network with pooling attention fusion for HSI classification, which collaboratively utilizes CNNs and ViT to process spatial and spectral features separately. Specifically, we propose a Twin-Branch Feature Extraction (TBFE) module, which employs 3D and 2D convolution in parallel to comprehensively extract spectral and spatial features from HSI. A hybrid pooling attention (HPA) module is designed to aggregate spatial attention. Moreover, a cascade transformer encoder is employed for global spectral feature extraction, and a simple yet efficient cross-layer feature fusion (CFF) module is designed to reduce the loss of crucial information in the previous network layers. Extensive experiments are conducted on several representative datasets to demonstrate the superior performance of our proposed method compared to the state-of-the-art works. Code is available at https://github.com/chenpeng052/SCT-Net.git.
Interpretable Physics-Informed Load Forecasting for U.S. Grid Resilience: SHAP-Guided Ensemble Validation in Hybrid Deep Learning Under Extreme Weather
Accurate short-term electricity load forecasting is a cornerstone of U.S. grid reliability; however, prevailing deep learning models remain opaque, limiting operator trust during extreme weather. A unified, interpretable, physics-informed ensemble framework is proposed, integrating a Convolutional Neural Network (CNN) branch for local feature extraction and a Transformer branch for long-range dependency modeling; the branches are fused through a validation-optimized weighted ensemble and regularized by a physics-informed loss derived from the piecewise parabolic temperature-demand relationship of the Electric Reliability Council of Texas (ERCOT) system. Post-hoc interpretability is provided through SHapley Additive exPlanations (SHAP) with the DeepExplainer backend, yielding global and event-level attributions. Using eight years of ERCOT hourly load data (2018-2025) fused with Automated Surface Observing System (ASOS) records from three Texas stations, the framework achieves 713 MW MAE, 812 MW RMSE, and 1.18% MAPE on the test window. For Hampel-flagged extreme events, MAPE falls by 20.7% relative to its Transformer branch and by 40.5% relative to its CNN branch; an ablation confirms that the parabolic and ramp constraints drive a 14.7% RMSE reduction. SHAP analysis reveals a regime shift: temperature dominates under normal operation, whereas wind speed and precipitation become more influential during cold fronts and heatwaves.