Phenotypes

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8 papers in the last 28 days · 0.1% of indexed attention

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Period ending 2026-09-21

4 new papers

A weekly snapshot of new work published in Phenotypes.

Period ending 2026-09-14

1 new paper

A weekly snapshot of new work published in Phenotypes.

Period ending 2026-09-07

2 new papers

A weekly snapshot of new work published in Phenotypes.

69 papers

Latest in Phenotypes

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  1. ERCPMP-Gx: Endoscopic Image and Video Dataset for Morphological, Histopathological, and Genomic Characterization of Colorectal Polyposis

    Sep 17, 2026Zahra Ghaffari, Massih Bahar, Mojgan Forootan +2Colorectal CancerPolyp Segmentation

  2. Self-Replicating Neural Cellular Automata: Quantifying Emergent Phenotypic and Genotypic Diversity in an OpenEnded Substrate

    Sep 17, 2026Sanyam Jain, Felix Simon Reimers, Stefano NicheleNeural Cellular AutomataReplicator Equations

  3. Large Language Model Agents for Evidence Based Genetic Disease Severity Classification

    Sep 17, 2026Tohid Ghasemnejad, Ahmadreza Argha, Mark Grosser +7PhenotypesCalibrated Severity

  4. HPOQuest: A Rare-Disease Diagnostic Agent Using Active Phenotype Acquisition

    Sep 16, 2026Kamilia Zaripova, Nassir Navab, Azade Farshad +1Rare DiseasePhenotypes

  5. Zero-Shot 3D Plant Organ Segmentation with SAM3 and Semantic NeRFs

    Sep 7, 2026Andreas Gilson, Laura Hennig, Peter Pietrzyk3D Semantic Segmentation3D Plant Phenotyping

  6. ProtLingo: Efficient Protein Language Modeling via Conditional Memory and Expert Routing

    Sep 7, 2026Mingrui Li, Sixian Shen, Minzhang Li +4Graph Language ModelsSequence Modeling

  7. Different representation learning objectives recover distinct latent structures from the same psychometric data

    Aug 31, 2026Cong Cao, Tassos C. Kyriakides, Pambos VrasidasPsychometricsLatent Structure

  8. AI-enabled Low-Cost 3D Maize Ear Morphometry Platform at Breeding Scale

    Aug 31, 2026Therin Young, Elijah Rodriguez, Lisa Coffey +4CropKey Vertebral Morphometry Variables

  9. Evaluation of Clinically Steerable Retinal Image Generation from Foundation Model Latent Spaces

    Aug 13, 2026Zuzanna A. Wakefield-Skórniewska, Bartłomiej W. PapieżMedical Image GenerationFoundation Model

  10. Multi-Level Evidence Aggregation for Robust Facial Phenotype Retrieval in Rare Genetic Disorder Prioritization

    Aug 11, 2026Alexander Hustinx, Carolin Kaffiné, Behnam Javanmardi +2PhenotypesRare Disease

  11. One-Time Training for All Grains: Open-Set Grain Recognition and Quantitative Analysis

    Aug 10, 2026Qihe Su, Mengyu Sun, Yuxi Ke +4CropFine-Grained Perception

  12. Decoding Phenotypes: A Framework for Fusing Genomic Language Models and Neuroimaging

    Aug 9, 2026Tianli Tao, Ziyang Wang, Emma Robinson +2Neuroimaging ModelsGenomics

  13. JUMP-lite: Compact, reproducible benchmarking of cell representations

    Aug 7, 2026Alán F. Muñoz, Johan Fredin Haslum, Runxi Shen +2PhenotypesMicroscopy

  14. Genotypic Triggers: Exposing Pharmacogenomic Blind Spots via Host-Specific Backdoors in Generative Antimicrobial Peptide Models

    Aug 7, 2026Doniyorkhon Obidov, Xiaolong Guo, Yonghui Li +1Cyclic PeptidesBackdoor Attacks

  15. A Physics-Flavored Transformer Network for Parametrizing Contraction Dynamics of Engineered Skeletal Muscle Tissues

    Aug 4, 2026Mattias Luber, Timo BetzConventional Physics-Informed Neural NetworksMuscle Anatomy

  16. Learning Molecular Representations from Cellular Phenotypes with Structure Preservation

    Aug 3, 2026Xuan Lin, Jingyu Sheng, Tengfei Ma +2PhenotypesVast Chemical Space

  17. Can Synthetic Data Overcome the Generalization Limits of AI-Based Flower and Pod Detection Across Cowpea Breeding Genotypes and Environments?

    Jul 30, 2026Hamid Kamangir, Jonathan Berlingeri, Earl Ranario +6Synthetic DataMultimodal Domain Generalization

  18. A Computational Ethical Framework for Financial Digital Phenotyping for Mental Health

    Jul 27, 2026Oluwadara Adedeji, Michael Mayowa Farayola, Jeff Brozena +3EthicsArtificial Intelligence Governance

  19. GraphRareBench: An Auditable Graph-Evidence Benchmark for Phenotype-Driven Rare-Disease Diagnosis

    Jul 27, 2026Guiling Guo, Jia Yang, Jiahao Xu +3Rare DiseaseDiagnostic Benchmark

  20. Foundation-model-guided radiogenomic discovery linking cancer genomes to cancer scans

    Jul 22, 2026Frederik Hauke, Jeremias Krause, Patrick Wienholt +6Cancer Genome AtlasRadiomics

  21. Text-conditioned Segmentation for Tomato Phenotyping via Procedural Synthetic Data

    Jul 20, 2026Samy Mounir, Mikolaj Cieslak, Najmeddine Dhieb +83D Plant PhenotypingSynthetic Dataset

  22. Using binary silver labels in electronic health records-based computable phenotyping algorithms

    Jul 20, 2026Shuhe Wang, Matthew T. Slaughter, Jennifer C. Nelson +1PhenotypesElectronic Health Records

  23. Evolving Self-Organising Agents Without Fitness: Three Falsifiable Experiments from Constraint-Driven Selection to Developmental Encoding

    Jul 18, 2026Anushka SharmaEvolutionSelf-Evolving Agents

  24. Still image and spatial-temporal tomato data enabling detection, segmentation, tracking, and video-instance segmentation using strong and weak labels

    Jul 16, 2026Michael Halstead, Esra Guclu, Mohamed Farag +7FruitVideo Dataset

  25. A Unified Framework for Comprehensive Cardiac CT Segmentation and Phenotyping: Human-in-the-Loop Data Annotation, Vision Foundation Model Development, Multicenter Evaluation and Clinical Validation

    Jul 13, 2026Pooya Mohammadi Kazaj, Leo Fridolin Weber, Wen Xie +17Whole-Heart SegmentationPhenotypes

  26. PhenoEmbed: Self-Supervised Multispectral UAV Time-Series Embeddings for Individual Tree Crown Phenology

    Jul 11, 2026Taimur KhanMultiple Hyperspectral BenchmarksTrees

  27. The Effects of Synthetic Data and Label Distribution on Canola Branch Counting

    Jul 10, 2026Amirsalar Darvishpour, Mikolaj Cieslak, Adam RunionsSynthetic DatasetSynthetic-To-Real Domain Gap

  28. AI-guided stimuli discovery and generation to optimize facial emotion perception studies in autism

    Jul 9, 2026Kushin Mukherjee, Na Yeon Kim, Maren Wehrheim +2Autism Spectrum DisorderFacial Expression Recognition

  29. A Transdiagnostic Space of Disorder Like Phenotypes in Reinforcement Learning Agents

    Jul 8, 2026Hari PrasadMental HealthPhenotypes

  30. Hierarchical Classification via Cascading Feature Elimination: Application to Human Phenotype Ontology-Aligned Facial Phenotyping (FaceMesh2HPO)

    Jul 6, 2026Fabio Hellmann, Alexander Hustinx, Benjamin D. Solomon +4PhenotypesOne-Shot Medical Landmark Detection

  31. PhenoNEST: A Neuro-Symbolic Framework for Ontology-Aware Multimodal Plant Phenotyping and Trait Discovery

    Jul 3, 2026Jayant Ghadge, Soumyashree Kar, Surya S. Durbha3D Plant PhenotypingPhenotypes

  32. Population-Scale Segmentation of Penile Tissue in DIXON MRI using Deep Learning for Quantitative Phenotyping in Male Reproductive Health

    Jul 2, 2026Jan Ernsting, Gunnar Paul Kordes, Nils Johannaber +5Magnetic Resonance ImagingTissue Architecture

  33. Structured Gaussian Processes for Uncertainty-Aware Classification of High-Dimensional, Small-Sampled Omics Data

    Jul 2, 2026Yue Zhang, Nandini Amit Gadhia, Georgios Karagiannis +1Multi-Omic FrameworkExtreme Class Imbalance

  34. Evolutionary Wave Function Collapse

    Jul 2, 2026Dipika Rajesh, Ahmed Khalifa, Julian TogeliusEvolutionary SearchMotion Generation

  35. The Turning Point of 3D Plant Phenotyping: 3D Foundation Models Enable Minute-to-Second Cross-Crop Reconstruction and Beyond

    Jul 2, 2026Hanyue Jia, Wei Zhou, Wenbo Zhou +33D Plant Phenotyping3D Foundation Models

  36. CW-B: Class Weighted Boosting Framework for Imbalance Resilient Multi Class Cardiac Phenotyping

    Jun 29, 2026Sijia Li, Xiaoyu Tan, Chen Zhan +3Extreme Class ImbalancePhenotypes

  37. CPAgents: Agentic Composite Phenotype Generation for Cardiac Disease Association

    Jun 26, 2026Zuoou Li, Wenlong Zhao, Kelly Yu +5PhenotypesCardiometabolic Risk

  38. GRAFT: Biological Graph and Hypergraph Benchmarks for Linked Gene Expression and Phenotypic Trait Prediction in Arabidopsis thaliana

    Jun 25, 2026Manuel Serna-Aguilera, Vanshika Jindal, Fiona L. Goggin +53D Plant PhenotypingPhenotypes

  39. DeepBD: A Grounded Agentic Workflow for Variant Prioritization and Diagnosis of Genetic Birth Defects

    Jun 23, 2026Shiyu Li, Ziqi Yan, Zhihao Wu +7PhenotypesPrioritization

  40. Dementia-Agents: A Multi-Modal Multi-Agent System for Dementia Staging and Phenotyping

    Jun 19, 2026Yaling Shen, Maja Christensen, Yiwen Jiang +4AlzheimerMultimodal Clinical Data

  41. REVEAL++: Differentiable Phenotypic Grouping for Vision-Language Retinal Modeling of Alzheimer's Disease Risk

    Jun 17, 2026Ethan Elio Meidinger, Seowung Leem, Zeyun Zhao +1AlzheimerRetinal Imaging

  42. Robust Image-Driven Phenotyping of Ovarian Tumor Cells using Optimized Dynamic Features in Hyperbolic Channels

    Jun 15, 2026Hong-Fei Li, Xi-Lin Gao, Yi-Juan Xiang +6Fluidic TransportMicroscopy

  43. From Genes to Tokens: a GWAS-inspired Approach for Interpretable Stylometric Analysis

    Jun 8, 2026Dmitry Pronin, Evgeny KazartsevStylometricAuthorship

  44. Comparison of Deep Learning Frameworks For Rice Disease Mapping From UAV Multispectral Imaging

    Jun 4, 2026Yadav Raj Ghimire, Jagrati Talreja, Tewodros Syum Gebre +3Tomato DiseasesApple Tree Leaf Disease Segmentation Dataset

  45. Sparse Functional Singular Value Decomposition for Biclustering and Triclustering Longitudinal Data

    Jun 3, 2026Yue Zhao, Thierry Chekouo, Sandra SafoLongitudinal DataSingular Value Decomposition

  46. CP-Agent: Context-Aware Multimodal Reasoning for Cellular Morphological Profiling under Chemical Perturbations

    Jun 2, 2026Yuxin Zhang, Yiyao Li, Ping Shu Ho +3Drug DiscoveryMultimodal Agents

  47. DXA-Derived Skeletal Phenotypes and Hip Fracture Risk: A Backdoor-Adjusted Causal Analysis

    May 29, 2026Zixin Shi, Chen Zhao, Meiling Zhou +8Phenotypes

  48. Frontier LLM-based agents can overcome the ontology curation bottleneck for natural phenotypes

    May 27, 2026James P. Balhoff, Hilmar LappPhenotypesData-Curation

  49. PhAME: Phenotype-Aware Molecular Editing via Latent Diffusion

    May 27, 2026Łukasz Janisiów, Sebastian Musiał, Bartosz Zieliński +2Molecular OptimizationDrug Design

  50. GEESE: Genotype-aware End-to-End Spatio-temporal Embedding for Behavioral Phenotyping

    May 23, 2026Yiran Ding, Yuen Gao, Chunqi Qian +1PhenotypesAutism Spectrum Disorder

  51. Universal CT Representations from Anatomy to Disease Phenotype through Agglomerative Pretraining

    May 21, 2026Yuheng Li, Yuan Gao, Haoyu Dong +5Computed Tomography DatasetAnatomy

  52. Towards Label-Free Single-Cell Phenotyping Using Multi-Task Learning

    May 14, 2026Saqib Nazir, Ardhendu BeheraAcute Myeloid LeukemiaSingle-Cell Rna Sequencing

  53. The Geno-Synthetic Algorithm: Type-Factored Coevolutionary Optimization for Heterogeneous Genotypes and Assembled Phenotypes

    May 13, 2026Alex BogdanGenetic AlgorithmsEvolutionary Search

  54. Quantifying Rodda and Graham Gait Classification from 3D Markerless Kinematics derived from a Single-view Video in a Heterogeneous Pediatric Clinical Cohort

    May 11, 2026Lauhitya Reddy, Seth Donahue, Jeremy Bauer +8Single-Subject Gait DatasetGait Recognition

  55. AssayBench: An Assay-Level Virtual Cell Benchmark for LLMs and Agents

    May 11, 2026Edward De Brouwer, Carl Edwards, Alexander Wu +9PhenotypesDrug Discovery

  56. CT-IDP: Segmentation-Derived Quantitative Phenotypes for Interpretable Abdominal CT Disease Classification

    May 9, 2026Lavsen Dahal, Joseph Y. LoPhenotypes

  57. Shapley Regression for Rare Disease Diagnosis Support: a case study on APDS

    May 9, 2026Safa Alsaidi, Tomás Brogueira, Nizar Mahlaoui +5Rare DiseasePhenotypes

  58. A Linear-Transformer Hybrid for SNP-Based Genotype-to-Phenotype Prediction in Grapevine

    May 7, 2026Yibin Wang, Murukarthick Jayakodi, Silvas Kirubakaran +2PhenotypesHybrid

  59. MixINN: Accelerating Plant Breeding by Combining Mixed Models and Deep Learning for Interaction Prediction

    May 6, 2026Aike Potze, Fred van Eeuwijk, Ioannis N. AthanasiadisDeep LearningArtificial Intelligence Research

  60. Graph Neural Network based Hierarchy-Aware Embeddings of Knowledge Graphs: Applications to Yeast Phenotype Prediction

    May 5, 2026Filip Kronström, Alexander H. Gower, Daniel Brunnsåker +2Graph Neural NetworksKnowledge Graphs