Causal Reasoning

Standard fine-tuning of transformer models on causal reasoning tasks leads to catastrophic model collapse, where models learn trivial solutions such as always predicting "Yes" or "No" regardless of input structure. We demonstrate that fine-tuning Gemma 270M on transitivity and d-separation tasks without semantic loss results in 100% collapse rate, with models achieving misleadingly high accuracy (73.9%) while learning no causal reasoning. We propose a semantic loss function with graph-based logical constraints and dynamic lambda scheduling that prevents this collapse. Our approach achieves 70.4% accuracy on transitivity tasks and 68.6% on d-separation tasks with stable, context-dependent predictions, representing a 42.7% improvement over collapsed baselines. Adversarial evaluation on 1,000 structural reasoning samples shows semantic models achieve 67-70% accuracy while collapsed models fail catastrophically at 43-71%. We validate our findings through comprehensive benchmarking on 200,000+ evaluation samples across five model variants, demonstrating that semantic loss is essential and not optional, for stable causal reasoning in transformers.

Despite theoretical advantages, causal methods for Gene Regulatory Network (GRN) inference from single-cell RNA-seq data consistently fail to match or outperform correlation-based baselines in many realistic benchmarks, a persistent puzzle which casts doubt on the value of causality for this task. We argue that existing benchmarks are insufficiently controlled to answer this question because they evaluate on real or semi-real data where multiple pathologies co-occur, confounding failure modes, and obscuring the specific conditions under which different inference methods excel or fail. To address this gap, we introduce a controlled diagnostic framework that isolates seven biologically motivated pathologies (dropout, latent confounders, cell-type mixing, feedback loops, network density, sample size, and pseudotime drift) and measure how six representative methods spanning three inference paradigms degrade as each pathology intensifies. Across 6,120 controlled experiments, we find that causal methods genuinely dominate in clean and structurally favorable regimes, but specific pathologies (notably dropout and latent confounders) selectively neutralize their advantages. We further introduce an error-type decomposition that reveals methods with similar aggregate accuracy commit qualitatively different errors. To probe whether single-pathology effects persist when multiple stressors co-occur, we perform an interaction sweep over the three most impactful pathologies and find that their joint effects are sub-additive, while also exposing density-conditional cross-overs invisible to single-dial analysis. Our findings offer a nuanced understanding of when and why different methods succeed or fail for GRN inference, providing actionable insights for method development and practical guidance for practitioners.

Causal reasoning in natural language requires identifying relevant variables, understanding their interactions, and reasoning about effects and interventions, often under noisy or ambiguous conditions. While large language models (LLMs) exhibit strong general reasoning abilities, they struggle to disentangle correlation from causation, particularly when observations are partially incorrect or irrelevant information is present. In this work, we introduce NoisyCausal, a new benchmark designed to evaluate causal reasoning under structured noise. Each instance is generated from a ground-truth causal graph and contextualized with a natural language scenario by injecting controllable forms of noise, such as irrelevant distractors, value perturbations, confounding, and partial observability. Moreover, we propose a modular reasoning framework that combines LLMs with explicit causal structure to address these challenges. Our method prompts the LLM to extract variables, construct a causal graph from context, and then reformulates the reasoning task as a structured prompt grounded in this graph. Rather than relying on statistical patterns alone, the LLM is guided by symbolic structure, enabling more interpretable and robust inference. Experimental results show that our method significantly outperforms standard prompting and reasoning baselines on NoisyCausal. Furthermore, it generalizes well to external benchmarks such as Cladder without task-specific tuning. Our findings highlight the importance of combining causal abstractions with language-driven reasoning to achieve faithful and robust causal understanding in LLMs.

Event Causality Identification (ECI) requires models to determine whether a given pair of events in a context exhibits a causal relationship. While Large Language Models (LLMs) have demonstrated strong performance across various NLP tasks, their effectiveness in ECI remains limited due to biases in causal reasoning, often leading to overprediction of causal relationships (causal hallucination). To mitigate these issues and enhance LLM performance in ECI, we propose SERE, a structural example retrieval framework that leverages LLMs' few-shot learning capabilities. SERE introduces an innovative retrieval mechanism based on three structural concepts: (i) Conceptual Path Metric, which measures the conceptual relationship between events using edit distance in ConceptNet; (ii) Syntactic Metric, which quantifies structural similarity through tree edit distance on syntactic trees; and (iii) Causal Pattern Filtering, which filters examples based on predefined causal structures using LLMs. By integrating these structural retrieval strategies, SERE selects more relevant examples to guide LLMs in causal reasoning, mitigating bias and improving accuracy in ECI tasks. Extensive experiments on multiple ECI datasets validate the effectiveness of SERE. The source code is publicly available at https://github.com/DMIRLAB-Group/SERE.

While significant progress has been made in Video Question Answering and cross-modal understanding, causal reasoning about how visual dynamics drive musical structure in music videos remains under-explored. We introduce KARMA-MV, a large-scale multiple-choice QA dataset derived from 2,682 YouTube music videos, designed to test models' ability to integrate temporal audio-visual cues and reason about visual-to-musical influence across reasoning, prediction, and counterfactual questions. Unlike traditional datasets requiring manual annotation, KARMA-MV leverages LLM reasoning for scalable generation and validation, yielding 37,737 MCQs. We propose a causal knowledge graph (CKG) approach that augments vision-language models (VLMs) with structured retrieval of cross-modal dependencies. Experiments on state-of-the-art VLMs and LLMs show consistent gains from CKG grounding -- especially for smaller models -- establishing the value of explicit causal structure for music-video reasoning. KARMA-MV provides a new benchmark for advancing causal audio-visual understanding beyond correlation.

Causality is a central topic in scientific inquiry, yet for complex systems, the identification and analysis of synergistic causation remain a challenging and fundamental problem. In the context of causal relations among multivariate variables, a decomposition framework grounded in interventionist causation is still lacking. To address this gap, this paper proposes Partial Effective Information Decomposition (PEID), a framework that decomposes the influence of multiple source variables on a target variable under maximum-entropy interventions into unique and synergistic information, thereby providing a unified and computable characterization of synergistic causal relations. Theoretically, in the three-variable case, the proposed framework is compatible with the major axioms of Partial Information Decomposition (PID). Empirically, under maximum-entropy interventions, correlations among input variables are removed, causing redundancy to vanish and thereby enabling PEID to compute synergistic relations. Furthermore, based on this framework, it is possible to define causal graphs containing hyperedges as well as downward causation, thus offering a unified toolkit for analyzing cross-scale and multivariate causal mechanisms in complex systems. Finally, applying the framework to a machine-learning-based air quality forecasting task on KnowAir-V2, we demonstrate that PEID can extract interpretable inter-station causal structures from a learned dynamical model. These results suggest that PEID provides a general interventionist information-theoretic tool for analyzing multivariate and synergistic causal mechanisms in complex systems.

Software engineering increasingly involves making high-stakes decisions under uncertainty, using signals from code, field data, and socio-technical processes. Recent AI-driven support (e.g., anomaly detection, predictive analytics, AIOps, as well as LLM-based agents) has amplified engineers' ability to detect patterns and synthesize content and recommendations, but many critical questions are interventional or counterfactual: What is the expected impact of changing a load-balancing strategy? Would an outage have been avoided under a different release plan? Correlational models answer "what tends to co-occur"; they struggle to answer "what would happen if we act." We propose Causal Software Engineering (CSE) as a future paradigm in which causal models and causal reasoning systematically inform activities across the software lifecycle, augmenting existing practices with explicit assumptions, uncertainty-aware effect estimates, and counterfactual diagnosis. We outline (i) a causal-first workflow view spanning development and operations, (ii) a staged roadmap for tools and organizational adoption, and (iii) an evaluation and benchmark agenda for measuring progress.

Pearl's causal hierarchy shows that observational, interventional, and counterfactual queries are qualitatively distinct. We ask a quantitative version of this question: how many additional bits are needed to specify higher-rung causal answers once lower-rung answers are known? We formalize this via query-class description length, the Kolmogorov complexity of the answer oracle induced by an SCM for a class of queries. Our main construction gives binary acyclic SCMs whose observational distribution has constant description length, while the single-variable interventional answer oracle has description length $Θ(n^2)$. A degree-sensitive upper bound shows that finite-gate-schema SCMs of indegree $d$ have observational-interventional gap at most $O(nd \log(en/d) + n \log n)$, making the quadratic construction order-optimal in the dense regime and a rooted-tree construction order-optimal for bounded indegree. The quadratic separation persists under $\varepsilon$-accurate total-variation descriptions for every fixed $\varepsilon < 1/4$. At the next rung, the full hard-do interventional oracle can still leave a $Θ(n)$ counterfactual description gap. A general ambiguity-to-bits theorem and Shannon analogue show that these gaps equal the logarithm of residual higher-rung ambiguity up to lower-order terms.

External priors of unknown reliability create a brittle trade-off in causal discovery: blind trust amplifies errors, blind rejection wastes signal. Real priors are also heterogeneously reliable -- physical laws are trustworthy, LLM-suggested edges are speculative -- yet existing methods either ignore priors or impose them through globally uniform trust. We propose PRCD-MAP, a soft prior-consumption layer that assigns per-edge trust to an imperfect prior and uses it to modulate a prior-aware $\ell_1$ and prior-weighted $\ell_2$ regularizer in a MAP objective. Trust is calibrated by empirical Bayes on a Laplace-approximated marginal likelihood and propagated along the prior graph by an MLP, so data-confirmed neighborhoods boost trust and contradictions suppress it. PRCD-MAP enjoys a population-level safety guarantee: it is $\varepsilon$-safe in expectation over the prior-generation distribution, with $\varepsilon\leq C\cdot\mathrm{acc}(1{-}\mathrm{acc})\cdot d^2/T$ at the parametric $T^{-1}$ rate and vanishing at the prior-quality endpoints. When the prior is uninformative, learned trust provably collapses to its floor and the method recovers a no-prior baseline. Empirically, on real CausalTime data PRCD-MAP exploits informative LLM priors (LLM-prior gain $+0.067/+0.089$ AUROC on AQI/Medical over a no-prior PRCD-MAP backbone; combined backbone+prior lead $+0.123/+0.043$ over PCMCI+), auto-attenuates on the anonymous-variable Traffic stress test, and retains a lead at $d{=}300$; against BayesDAG, the closest soft-Bayesian baseline, PRCD-MAP wins on every CausalTime dataset under a matched $W_0$-only protocol. A four-way ablation isolates each component: EB calibration and MLP trust propagation jointly carry the plurality of the gain, with positive sign on every dataset. Extensions to nonlinear (NAM) and cross-sectional settings show the calibrated-trust principle is setting-agnostic.

Causal graph discovery for space-time systems is challenging in high-dimensional gridded data, which often has many more grid cells than temporal observations per cell. The Causal Space-Time Stencil Learning (CaStLe) meta-algorithm was developed to address that niche under space-time locality and stationarity assumptions, but it is currently limited to univariate analyses. In this work, we present M-CaStLe. M-CaStLe generalizes the local embedding and parent-identification phases of CaStLe to jointly model local within-variable and cross-variable space-time causal structures in gridded data. Like CaStLe, by constraining candidate parents to a constant-size space-time neighborhood and pooling spatial replicates, M-CaStLe increases effective sample size to make discovery tractable in high-dimensional settings. We further decompose the resulting multivariate stencil graph into reaction and spatial graphs to aid interpretation in complex settings. We study M-CaStLe in four settings: a multivariate space-time vector autoregression benchmark with known ground truth, an advective-diffusive-reaction partial differential equation verification problem with derived physical reference structure, an atmospheric chemistry case study in a low-temporal-sample regime, and an El Niño Southern Oscillation study on reanalysis data, identifying phase-dependent ocean--atmosphere coupling. Across these settings, M-CaStLe more accurately recovers multivariate causal structure in controlled settings and identifies important physical dynamics in real-world case studies. Overall, M-CaStLe advances causal discovery for multivariate space-time systems while retaining interpretability at the grid level.

Vision-Language-Action (VLA) policies often fail under distribution shift, suggesting that decisions may depend on spurious visual correlations rather than task-relevant causes. We formulate visual-action attribution as an interventional estimation problem. Accordingly, we introduce the Interventional Significance Score (ISS), an interventional masking procedure for estimating the causal influence of visual regions on action predictions, and the Nuisance Mass Ratio (NMR), a scalar measure of attribution to task-irrelevant features. We analyze the statistical properties of ISS and show that it admits unbiased estimation, and we characterize conditions under which action prediction error provides a valid proxy for causal influence. Experiments across diverse manipulation tasks indicate that NMR predicts generalization behavior and that ISS yields more faithful explanations than existing interpretability methods. These results suggest that interventional attribution provides a simple diagnostic approach for identifying causal misalignment in embodied policies.

The scalability of Large Language Models to long sequences is hindered by the quadratic cost of attention and the limitations of positional encodings. To address these, we introduce Caracal, a novel architecture that replaces attention with a parameter-efficient, O(L log(L)) Multi-Head Fourier (MHF) module. Our contributions are threefold: (1) We leverage the Fast Fourier Transform (FFT) for sequence mixing, inherently addressing both bottlenecks mentioned above. (2) We apply a frequency-domain causal masking technique that enforces autoregressive capabilities via asymmetric padding and truncation, overcoming a critical barrier for Fourier-based generative models. (3) Unlike efficient models relying on hardware-specific implementations (e.g., Mamba), we uses standard library operators. This ensures robust portability, eliminating common deployment barriers. Evaluations demonstrate that Caracal performs competitively with Transformer and SSM baselines, offering a scalable and simple pathway for efficient long-sequence modeling. Code is available in Appendix.

A key challenge for the safety of advanced AI systems is the possibility that multiple simpler agents might inadvertently form a collective agent with capabilities and goals distinct from those of any individual. More generally, determining when a group of agents can be viewed as a unified collective agent is a foundational question in the study of interactions and incentives in both biological and artificial systems. We adopt a behavioral perspective in answering this question, ascribing collective agency to a group when viewing the group's joint actions as rational and goal-directed successfully predicts its behavior. We formalize this perspective on collective agency using causal games -- which are causal models of strategic, multi-agent interactions -- and causal abstraction -- which formalizes when a simple, high-level model faithfully captures a more complex, low-level model. We use this framework to solve a puzzle regarding multi-agent incentives in actor-critic models and to make quantitative assessments of the degree of collective agency exhibited by different voting mechanisms. Our framework aims to provide a foundation for theoretical and empirical work to understand, predict, and control emergent collective agents in multi-agent AI systems.

Safety trained large language models (LLMs) can often be induced to answer harmful requests through jailbreak prompts. Because we lack a robust understanding of why LLMs are susceptible to jailbreaks, future frontier models operating more autonomously in higher-stakes settings may similarly be vulnerable to such attacks. Prior work has studied jailbreak success by examining the model's intermediate representations, identifying directions in this space that causally encode concepts like harmfulness and refusal. Then, they globally explain all jailbreak attacks as attempting to reduce or strengthen these concepts (e.g., reduce harmfulness). However, different jailbreak strategies may succeed by strengthening or suppressing different intermediate concepts, and the same jailbreak strategy may not work for different harmful request categories (e.g., violence vs. cyberattack); thus, we seek to give a local explanation -- i.e., why did this specific jailbreak succeed? To address this gap, we introduce LOCA, a method that gives Local, CAusal explanations of jailbreak success by identifying a minimal set of interpretable, intermediate representation changes that causally induce model refusal on an otherwise successful jailbreak request. We evaluate LOCA on harmful original-jailbreak pairs from a large jailbreak benchmark across Gemma and Llama chat models, comparing against prior methods adapted to this setting. LOCA can successfully induce refusal by making, on average, six interpretable changes; prior work routinely fails to achieve refusal even after 20 changes. LOCA is a step toward mechanistic, local explanations of jailbreak success in LLMs. Code to be released.

Perturbation probing generates task-specific causal hypotheses for FFN neurons in large language models using two forward passes per prompt and no backpropagation, followed by a one-time intervention sweep of about 150 passes amortized across all identified neurons. Across eight behavioral circuits, 13 models, and four architecture families, we identify two circuit structures that organize LLM behavior. Opposition circuits appear when RLHF suppresses a pre-training tendency. In safety refusal, about 50 neurons, or 0.014 percent of all neurons, control the refusal template; ablating them changes 80 percent of response formats on 520 AdvBench prompts while producing near-zero harmful compliance, 3 of 520 cases, all with disclaimers. Routing circuits appear for pre-training behaviors distributed through attention. For language selection, residual-stream direction injection switches English to Chinese output on 99.1 percent of 580 benchmark prompts in the 3 of 19 tested models that satisfy three observed conditions: bilingual training, FFN-to-skip signal ratio between 0.3 and 1.1, and linear representability. The same intervention fails on the other 16 models and on math, code, and factual circuits, defining the limits of directional steering. The FFN-to-skip signal ratio, computed from the same two forward passes, distinguishes the two structures and predicts the appropriate intervention. Circuit topology varies by architecture, from Qwen's concentrated FFN bottleneck to Gemma's normalization-shielded circuit. In Qwen3.5-2B, ablating 20 neurons eliminates multi-turn sycophantic capitulation, while amplifying 10 related neurons improves factual correction from 52 percent to 88 percent on 200 TruthfulQA prompts. These results show that perturbation probing offers mechanistic insight into RLHF-organized behavior and a practical toolkit for precision template-layer editing.

While mechanistic interpretability tools like Sparse Autoencoders (SAEs) can uncover meaningful features within Large Language Models (LLMs), a critical gap remains in transforming these insights into practical actions for model optimization. We bridge this gap with the hypothesis that data selection guided by a model's internal task features is a effective training strategy. Inspired by this, we propose Interpretability-Guided Data Selection (IGDS), a framework that first identifies these causal task features through frequency recall and interventional filtering, then selects ``Feature-Resonant Data'' that maximally activates task features for fine-tuning. We validate IGDS on mathematical reasoning, summarization, and translation tasks within Gemma-2, LLaMA-3.1, and Qwen3 models. Our experiments demonstrate exceptional data efficiency: on the Math task, IGDS surpasses full-dataset fine-tuning by a remarkable 17.4% on Gemma-2-2B while using only 50% of the data, and outperforms established baselines focused on data quality and diversity. Analysis confirms a strong positive correlation between feature amplification and task performance improvement. IGDS thus provides a direct and effective framework to enhance LLMs by leveraging their internal mechanisms, validating our core hypothesis.

Extracting abstract causal structures and applying them to novel situations is a hallmark of human intelligence. While Large Language Models (LLMs) and Vision Language Models (VLMs) have shown strong performance on a wide range of reasoning tasks, their capacity for interactive causal learning -- inducing latent structures through sequential exploration and transferring them across contexts -- remains uncharacterized. Human learners accomplish such transfer after minimal exposure, whereas classical Reinforcement Learning (RL) agents fail catastrophically. Whether state-of-the-art Artificial Intelligence (AI) models possess human-like mechanisms for abstract causal structure transfer is an open question. Using the OpenLock paradigm requiring sequential discovery of Common Cause (CC) and Common Effect (CE) structures, here we show that models exhibit fundamentally delayed or absent transfer: even successful models require initial environmental-specific mapping -- what we term environmental grounding -- before efficiency gains emerge, whereas humans leverage prior structural knowledge from the very first solution attempt. In the text-only condition, models matched or exceeded human discovery efficiency. In contrast, visual information -- in both the image-only and text-and-image conditions -- overall degraded rather than enhanced performance, revealing a broad reliance on symbolic processing rather than integrated multimodal reasoning. Models further exhibited systematic CC/CE asymmetries absent in humans, suggesting heuristic biases rather than direction-neutral causal abstraction. These findings reveal that large-scale statistical learning does not produce the decontextualized causal schemas underpinning human analogical reasoning, establishing grounding-dependent transfer as a fundamental limitation of current LLMs and VLMs.

When trained on tasks requiring an understanding of hierarchical structure, transformers have been found to represent this hierarchy in distinct ways: in the geometry of the residual stream, and in stack-like attention patterns maintaining a last-in, first-out ordering. However, it remains unclear whether these representations are causally used or merely decodable. We examine this gap in transformers trained on the Dyck language (a formal language of balanced bracket sequences), where the hierarchical ground truth is explicit. By probing and intervening on the residual stream and attention patterns, we find that depth, distance, and top-of-stack signals are all decodable, yet their causal roles diverge. Specifically, masking attention to the true top-of-stack position causes a sharp drop in long-distance accuracy, while ablating low-dimensional residual stream subspaces has comparatively little effect. These results, which extend to a templated natural language setting, suggest that even in a controlled setting where the relevant hierarchical variables are known, decodability alone does not imply causal use.

Existing deep network-based full-reference image quality assessment (FR-IQA) models typically work by performing pairwise comparisons of deep features from the reference and distorted images. In this paper, we approach this problem from a different perspective and propose a novel FR-IQA paradigm based on causal inference and decoupled representation learning. Unlike typical feature comparison-based FR-IQA models, our approach formulates degradation estimation as a causal disentanglement process guided by intervention on latent representations. We first decouple degradation and content representations by exploiting the content invariance between the reference and distorted images. Second, inspired by the human visual masking effect, we design a masking module to model the causal relationship between image content and degradation features, thereby extracting content-influenced degradation features from distorted images. Finally, quality scores are predicted from these degradation features using either supervised regression or label-free dimensionality reduction. Extensive experiments demonstrate that our method achieves highly competitive performance on standard IQA benchmarks across fully supervised, few-label, and label-free settings. Furthermore, we evaluate the approach on diverse non-standard natural image domains with scarce data, including underwater, radiographic, medical, neutron, and screen-content images. Benefiting from its ability to perform scenario-specific training and prediction without labeled IQA data, our method exhibits superior cross-domain generalization compared to existing training-free FR-IQA models.

Long-form video understanding remains fundamentally challenged by pervasive spatiotemporal redundancy and intricate narrative dependencies that span extended temporal horizons. While recent structured representations compress visual information effectively, they frequently sacrifice temporal coherence, which is critical for causal reasoning. Meanwhile, existing multi-agent frameworks operate through rigid, pre-defined workflows that fail to adapt their reasoning strategies to question-specific demands. In this paper, we introduce HiCrew, a hierarchical multi-agent framework that addresses these limitations through three core contributions. First, we propose a Hybrid Tree structure that leverages shot boundary detection to preserve temporal topology while performing relevance-guided hierarchical clustering within semantically coherent segments. Second, we develop a Question-Aware Captioning mechanism that synthesizes intent-driven visual prompts to generate precision-oriented semantic descriptions. Third, we integrate a Planning Layer that dynamically orchestrates agent collaboration by adaptively selecting roles and execution paths based on question complexity. Extensive experiments on EgoSchema and NExT-QA validate the effectiveness of our approach, demonstrating strong performance across diverse question types with particularly pronounced gains in temporal and causal reasoning tasks that benefit from our hierarchical structure-preserving design.

Distributed AI inference pipelines rely heavily on timestamp-based observability to understand system behavior. This work demonstrates that even small clock skew between nodes can cause observability to become causally incorrect while the system itself remains functionally correct and performant. We present controlled experiments on a multi-node AI inference pipeline, where clock skew is introduced at a single stage. Results show that no violations are observed under synchronized conditions and up to 3 ms skew, while clear causality violations emerge by 5 ms. Despite this, system throughput and output correctness remain largely unaffected. We further observe that violation behavior is not strictly static. In longer runs, negative span rates may stabilize or decrease over time, indicating that effective skew evolves due to relative clock drift between nodes. Experiments were conducted using Kafka and ZeroMQ transports, with consistent results across both. Aeron is under active exploration but is not yet included in the completed validation set. These findings suggest that observability correctness depends not only on system functionality but also on precise time alignment, and that timing must be treated as a first-class concern in distributed AI systems.

Emotion-Cause Pair Extraction in Conversations (ECPEC) aims to identify the set of causal relations between emotion utterances and their triggering causes within a dialogue. Most existing approaches formulate ECPEC as an independent pairwise classification task, overlooking the distinct semantics of emotion diffusion and cause explanation, and failing to capture globally consistent many-to-many conversational causality. To address these limitations, we revisit ECPEC from a semantic perspective and seek to disentangle emotion-oriented semantics from cause-oriented semantics, mapping them into two complementary representation spaces to better capture their distinct conversational roles. Building on this semantic decoupling, we naturally formulate ECPEC as a global alignment problem between the emotion-side and cause-side representations, and employ optimal transport to enable many-to-many and globally consistent emotion-cause matching. Based on this perspective, we propose a unified framework SCALE that instantiates the above semantic decoupling and alignment principle within a shared conversational structure. Extensive experiments on several benchmark datasets demonstrate that SCALE consistently achieves state-of-the-art performance. Our codes are released at https://github.com/CoCoSphere/SCALE.

Heterophily is a prevalent property of real-world graphs and is well known to impair the performance of homophilic Graph Neural Networks (GNNs). Prior work has attempted to adapt GNNs to heterophilic graphs through non-local neighbor extension or architecture refinement. However, the fundamental reasons behind misclassifications remain poorly understood. In this work, we take a novel perspective by examining recurring inductive subgraphs, empirically and theoretically showing that they act as spurious shortcuts that mislead GNNs and reinforce non-causal correlations in heterophilic graphs. To address this, we adopt a causal inference perspective to analyze and correct the biased learning behavior induced by shortcut inductive subgraphs. We propose a debiased causal graph that explicitly blocks confounding and spillover paths responsible for these shortcuts. Guided by this causal graph, we introduce Causal Disentangled GNN (CD-GNN), a principled framework that disentangles spurious inductive subgraphs from true causal subgraphs by explicitly blocking non-causal paths. By focusing on genuine causal signals, CD-GNN substantially improves the robustness and accuracy of node classification in heterophilic graphs. Extensive experiments on real-world datasets not only validate our theoretical findings but also demonstrate that our proposed CD-GNN outperforms state-of-the-art heterophily-aware baselines.

Nonlinear machine-learning models are increasingly used to discover causal relationships in time-series data, yet the interpretation of their outputs remains poorly understood. In particular, causal scores produced by regularized neural autoregressive models are often treated as analogues of regression coefficients, leading to misleading claims of statistical significance. In this paper, we argue that causal relevance in nonlinear time-series models should be evaluated through forecast necessity rather than coefficient magnitude, and we present a practical evaluation procedure for doing so. We present an interpretable evaluation framework based on systematic edge ablation and forecast comparison, which tests whether a candidate causal relationship is required for accurate prediction. Using Neural Additive Vector Autoregression as a case study model, we apply this framework to a real-world case study of democratic development, modeled as a multivariate time series of panel data - democracy indicators across 139 countries. We show that relationships with similar causal scores can differ dramatically in their predictive necessity due to redundancy, temporal persistence, and regime-specific effects. Our results demonstrate how forecast-necessity testing supports more reliable causal reasoning in applied AI systems and provides practical guidance for interpreting nonlinear time-series models in high-stakes domains.

Causal graphs in text are typically populated by observable, predefined events. In contrast, we study implicit causal graph construction from text by treating each described cause-effect pair as the begin- and endpoint of an underlying latent causal graph and using large language models (LLMs) to infer intermediate causal events. We compare end-to-end graph construction with methods that frame the task as causal chain discovery. In the latter, graphs are built either by aggregating inferred chains or by progressively expanding partial chains through an iterative search process. We further explore Wisdom of the Crowd extensions that access causal knowledge from multiple LLMs in post-hoc aggregation and collaborative inference settings. We analyze trade-offs among these approaches and evaluate the validity of inferred causal relations using a manually curated database of 1,560 scientifically validated causal pairs. This database-based evaluation is proposed as reliable, resource-efficient, and transferable to settings where ground-truth graphs are unavailable.

Understanding climate change requires reasoning over complex causal networks. Yet, existing causal discovery datasets predominantly capture explicit, direct causal relations. We introduce ClimateCause, a manually expert-annotated dataset of higher-order causal structures from science-for-policy climate reports, including implicit and nested causality. Cause-effect expressions are normalized and disentangled into individual causal relations to facilitate graph construction, with unique annotations for cause-effect correlation, relation type, and spatiotemporal context. We further demonstrate ClimateCause's value for quantifying readability based on the semantic complexity of causal graphs underlying a statement. Finally, large language model benchmarking on correlation inference and causal chain reasoning highlights the latter as a key challenge.

Large language models (LLMs) frequently generate toxic content, posing significant risks for safe deployment. Current mitigation strategies often degrade generation quality or require costly human annotation. We propose CAUSALDETOX, a framework that identifies and intervenes on the specific attention heads causally responsible for toxic generation. Using the Probability of Necessity and Sufficiency (PNS), we isolate a minimal set of heads that are necessary and sufficient for toxicity. We utilize these components via two complementary strategies: (1) Local Inference-Time Intervention, which constructs dynamic, input-specific steering vectors for context-aware detoxification, and (2) PNS-Guided Fine-Tuning, which permanently unlearns toxic representations. We also introduce PARATOX, a novel benchmark of aligned toxic/non-toxic sentence pairs enabling controlled counterfactual evaluation. Experiments on ToxiGen, ImplicitHate, and ParaDetox show that CAUSALDETOX achieves up to 5.34% greater toxicity reduction compared to baselines while preserving linguistic fluency, and offers a 7x speedup in head selection.

Multimodal Large Language Models (MLLMs) have demonstrated remarkable potential in medical image analysis. However, their application in gastrointestinal endoscopy is currently hindered by two critical limitations: the misalignment between general model reasoning and standardized clinical cognitive pathways, and the lack of causal association between visual features and diagnostic outcomes. In this paper, we propose a novel Clinical-Cognitive-Aligned (CogAlign) framework to address these challenges. First, we endow the model with rigorous clinical analytical capabilities by constructing the hierarchical clinical cognition dataset and employing Supervised Fine-Tuning (SFT). Unlike conventional approaches, this strategy internalizes the hierarchical diagnostic logic of experts, ranging from anatomical localization and morphological evaluation to microvascular analysis, directly into the model. Second, to eliminate visual bias, we provide a theoretical analysis demonstrating that standard supervised tuning inevitably converges to spurious background correlations. Guided by this insight, we propose a counterfactual-driven reinforcement learning strategy to enforce causal rectification. By generating counterfactual normal samples via lesion masking and optimizing through clinical-cognition-centric rewards, we constrain the model to strictly ground its diagnosis in causal lesion features. Extensive experiments demonstrate that our approach achieves State-of-the-Art (SoTA) performance across multiple benchmarks, significantly enhancing diagnostic accuracy in complex clinical scenarios.

Synthetic tabular data generation addresses data scarcity and privacy constraints in a variety of domains. Tabular Prior-Data Fitted Network (TabPFN), a recent foundation model for tabular data, has been shown capable of generating high-quality synthetic tabular data. However, TabPFN is autoregressive: features are generated sequentially by conditioning on the previous ones, depending on the order in which they appear in the input data. We demonstrate that when the feature order conflicts with causal structure, the model produces spurious correlations that impair its ability to generate synthetic data and preserve causal effects. We address this limitation by integrating causal structure into TabPFN's generation process through two complementary approaches: Directed Acyclic Graph (DAG)-aware conditioning, which samples each variable given its causal parents, and a partially directed acyclic graph (PDAG)-based strategy for scenarios with partial causal knowledge. We evaluate these approaches on controlled benchmarks and six CSuite datasets, assessing structural fidelity, distributional quality, and Average Treatment Effect (ATE) preservation. Across most settings, DAG-aware conditioning improves the quality and stability of synthetic data relative to vanilla TabPFN. Under partial causal knowledge, the oracle partially directed acyclic graph (oracle-PDAG), which orients only the edges into the colliders, shows moderate gains, while the benefit of a Completed Partially Directed Acyclic Graph (CPDAG) discovered from data depends on how well the causal structure is recovered. These results indicate that reliable causal structure, even partial, can be injected into TabPFN at inference time, without parameter updates, to improve synthetic data quality.

Selective conformal prediction can yield substantially tighter uncertainty sets when we can identify calibration examples that are exchangeable with the test example. In interventional settings, such as perturbation experiments in genomics, exchangeability often holds only within subsets of interventions that leave a target variable "unaffected" (e.g., non-descendants of an intervened node in a causal graph). We study the practical regime where this invariance structure is unknown and must be estimated from data. Our main result quantifies how coverage degrades when the estimated safe calibration set accidentally includes interventions that affect the target, and gives a conservative correction when an upper bound on this error is available. Rather than learning a full causal graph, we learn only the intervention-target relationships needed to choose calibration interventions. We give algorithms for this partial learning task and evaluate them on synthetic structural equation models and Replogle K562 CRISPR-interference data, where the experiments illustrate synthetic gains from selective calibration and finite-sample tradeoffs on real perturbation screens.

As large language models (LLMs) witness increasing deployment in complex, high-stakes decision-making scenarios, it becomes imperative to ground their reasoning in causality rather than spurious correlations. However, strong performance on traditional reasoning benchmarks does not guarantee true causal reasoning ability of LLMs, as high accuracy may still arise from memorizing semantic patterns instead of analyzing the underlying true causal structures. To bridge this critical gap, we propose a new causal reasoning benchmark, CausalFlip, designed to encourage the development of new LLM paradigm or training algorithms that ground LLM reasoning in causality rather than semantic correlation. CausalFlip consists of causal judgment questions built over event triples that could form different confounder, chain, and collider relations. Based on this, for each event triple, we construct pairs of semantically similar questions that reuse the same events but yield opposite causal answers, where models that rely heavily on semantic matching are systematically driven toward incorrect predictions. To further probe models' reliance on semantic patterns, we introduce a noisy-prefix evaluation that prepends causally irrelevant text before intermediate causal reasoning steps without altering the underlying causal relations or the logic of the reasoning process. We evaluate LLMs under multiple training paradigms, including answer-only training, explicit Chain-of-Thought (CoT) supervision, and a proposed internalized causal reasoning approach that aims to mitigate explicit reliance on correlation in the reasoning process. Our results show that explicit CoT can still be misled by spurious semantic correlations, where internalizing reasoning steps yields substantially improved causal grounding, suggesting that it is promising to better elicit the latent causal reasoning capabilities of base LLMs.

Estimating causal quantities traditionally relies on bespoke estimators tailored to specific assumptions. Recently proposed Causal Foundation Models (CFMs) promise a more unified approach by amortising causal discovery and inference in a single step. However, in their current state, they do not allow for the incorporation of any domain knowledge, which can lead to suboptimal predictions. We bridge this gap by introducing methods to condition CFMs on causal information, such as the causal graph or more readily available ancestral information. When access to complete causal graph information is too strict a requirement, our approach also effectively leverages partial causal information. We systematically evaluate conditioning strategies and find that injecting learnable biases into the attention mechanism, together with a graph-convolutional encoder, is a highly effective method to utilise full and partial causal information. Our experiments show that this conditioning allows a general-purpose CFM to match the performance of specialised models trained on specific causal structures. Overall, our approach addresses a central hurdle on the path towards all-in-one causal foundation models: the capability to answer causal queries in a data-driven manner while effectively leveraging any amount of domain expertise.

In online advertising, marketing interventions such as coupons introduce significant confounding bias into Click-Through Rate (CTR) prediction. Observed clicks reflect a mixture of users' intrinsic preferences and the uplift induced by these interventions. This causes conventional models to miscalibrate base CTRs, which distorts downstream ranking and billing decisions. Furthermore, marketing interventions often operate as multi-valued treatments with varying magnitudes, introducing additional complexity to CTR prediction. To address these issues, we propose the Unified Multi-Valued Treatment Network (UniMVT). Specifically, UniMVT disentangles confounding factors from treatment-sensitive representations, enabling a full-space counterfactual inference module to jointly reconstruct the debiased base CTR and intensity-response curves. To handle the complexity of multi-valued treatments, UniMVT employs an auxiliary intensity estimation task to capture treatment propensities and devise a unit uplift objective that normalizes the intervention effect. This ensures comparable estimation across the continuous coupon-value spectrum. UniMVT simultaneously achieves debiased CTR prediction for accurate system calibration and precise uplift estimation for incentive allocation. Extensive experiments on synthetic and industrial datasets demonstrate UniMVT's superiority in both predictive accuracy and calibration. Furthermore, real-world A/B tests confirm that UniMVT significantly improves business metrics through more effective coupon distribution.

Causal discovery is essential for advancing data-driven fields such as scientific AI and data analysis, yet existing approaches face significant time- and space-efficiency bottlenecks when scaling to large graphs. To address this challenge, we present CauScale, a neural architecture designed for efficient causal discovery that scales inference to graphs with up to 1000 nodes. CauScale improves time efficiency via a reduction unit that compresses data embeddings and improves space efficiency by adopting tied attention weights to avoid maintaining axis-specific attention maps. To keep high causal discovery accuracy, CauScale adopts a two-stream design: a data stream extracts relational evidence from high-dimensional observations, while a graph stream integrates statistical graph priors and preserves key structural signals. CauScale successfully scales to 500-node graphs during training, where prior work fails due to space limitations. Across testing data with varying graph scales and causal mechanisms, CauScale achieves 99.6% mAP on in-distribution data and 84.4% on out-of-distribution data, while delivering 4-13,000 times inference speedups over prior methods. Our project page is at https://github.com/OpenCausaLab/CauScale.

Retrieval augmented generation (RAG) has enhanced large language models by enabling access to external knowledge, with graph-based RAG emerging as a powerful paradigm for structured retrieval and reasoning. However, existing graph-based methods often over-rely on entity-centric node matching and lack explicit causal modeling, leading to unfaithful or spurious answers. Prior attempts to incorporate causality are typically limited to local or single-document contexts and also suffer from information isolation that arises from modular graph structures, which hinders scalability and cross-module causal reasoning. To address these challenges, we propose CausalRAG2, a framework that rethinks knowledge organization for graph-based RAG through causal gating across hierarchical modules. CausalRAG2 explicitly models causal relationships to suppress spurious correlations while enabling scalable reasoning over large-scale knowledge graphs. We also introduce HolisQA, a benchmark for holistic comprehension beyond entity-centric matching. Extensive experiments demonstrate that CausalRAG2 consistently outperforms competitive graph-based RAG baselines across multiple datasets and evaluation metrics. Our work establishes a principled foundation for structured, scalable, and causally grounded RAG systems. Our code and HolisQA benchmark are available at https://github.com/Pwnb/CausalRAG2.

Parameter-efficient continual learning aims to adapt pre-trained models to sequential tasks without forgetting previously acquired knowledge. Most existing approaches treat continual learning as avoiding interference with past updates, rather than considering what properties make the current task-specific update naturally preserve previously acquired knowledge. From a knowledge-decomposition perspective, we observe that low-rank adaptations exhibit highly imbalanced singular value spectra: a few dominant components absorb most of the adaptation energy, thereby (i) more likely to disrupt previously acquired knowledge and (ii) making the update more vulnerable to interference from subsequent tasks. To enable explicit balance among components, we decouple the magnitude of the task update from its directional structure and formulate it as a constrained optimization problem on a restricted Stiefel manifold. We address this problem using a projected first-order method compatible with standard deep-learning optimizers used in vision-language models. Our method mitigates both backward and forward forgetting, consistently outperforming continual learning baselines. The implementation code is available at https://github.com/haodotgu/EBLoRA.

Why do some physical systems possess consciousness, while others do not? A scientific theory of consciousness must explain differences in system behavior in terms of well-defined internal mechanisms. However, many existing approaches introduce higher-level structural or informational descriptions without specifying how these structures contribute to the generation of behavior, raising the concern that they may become theoretically ineffective.A further difficulty arises from the status of causation. Attempts to introduce causally effective mental states appear to conflict with physical theory, while strictly physicalist accounts risk excluding higher-level causation altogether. We argue that this dilemma stems from a conflation of physical determination with causation. To address this issue, we distinguish between two complementary descriptive frameworks: the physical stance and the causal stance. While the physical stance represents systems in terms of state evolution, the causal stance introduces asymmetric relations that enable the explicit representation of internal mechanisms. We show that causal descriptions provide a more constrained and informative representation of internal structure and cannot, in general, be reconstructed from physical descriptions alone. Within this framework, we define mental causation in terms of intrinsic causes and propose the Dual-Laws Model (DLM), which explicitly implements whole-to-parts causal mechanisms. This approach provides a principled way to model the causal role of consciousness without violating physical determinism.

We treat the internals of generative models as mechanistic objects rather than black boxes. We introduce \textbf{Attribution Graphs} (AGs), which extend GradCAM++ to circuit-level representations, and \textbf{Causal Probing}, a do-calculus intervention method for identifying causal latent structures, enabling detection and correction of spurious correlations, demographic biases, and misaligned decision circuits during training. We further propose the \textbf{Cognitive Alignment Score (CAS)}, quantifying agreement between model-internal representations and human concepts, a \textbf{saliency-first privacy mechanism} sharing only thresholded attribution nodes, a bias-aware regularizer aligning subgroup statistics, and a Reveal-to-Revise loop integrating attribution signals into parameter updates without separate fine-tuning. Evaluated on CelebA, FairFace, Jigsaw, and HateXplain, our method achieves \textbf{94.1%} accuracy, \textbf{92.3%} macro F1, \textbf{79.4%} IoU-XAI, and \textbf{12.7} FID at 72--76% adversarial robustness, while reducing subgroup disparity $Δ_{\mathrm{bias}}$ by \textbf{41%}, demonstrating that mechanistic interpretability, fairness, and generative performance can be jointly optimized.

Existing Causal-Why Video Question Answering (VideoQA) models often struggle with higher-order reasoning, relying on opaque, monolithic pipelines that entangle video understanding, causal inference, and answer generation. These black-box approaches offer limited interpretability and tend to depend on shallow heuristics. We propose a novel, modular paradigm that explicitly decouples causal reasoning from answer generation, introducing natural language causal chains as interpretable intermediate representations. Inspired by human cognitive models, these structured cause-effect sequences bridge low-level video content with high-level causal reasoning, enabling transparent and logically coherent inference. Our two-stage architecture comprises a Causal Chain Extractor (CCE) that generates causal chains from video-question pairs, and a Causal Chain-Driven Answerer (CCDA) that derives answers grounded in these chains. To address the lack of annotated reasoning traces, we introduce a scalable method for generating accurate causal chains from existing datasets. We construct human verified causal chains for 46K samples. We also propose CauCo, a new evaluation metric for causality-oriented captioning. Experiments on three large-scale benchmarks demonstrate that our approach not only outperforms state-of-the-art models, but also yields substantial gains in explainability, user trust, and generalization -- positioning the CCE as a reusable causal reasoning engine across diverse domains. Project page: https://paritoshparmar.github.io/chainreaction/

Despite the impressive performance of vision-language models (VLMs) on downstream tasks, their ability to understand and reason about causal relationships in visual inputs remains unclear. Robust causal reasoning is fundamental to solving complex high-level reasoning tasks, yet existing benchmarks often include a mixture of reasoning questions, and VLMs can frequently exploit object recognition and activity identification as shortcuts to arrive at the correct answers, making it challenging to truly assess their causal reasoning abilities. To bridge this gap, we introduce VQA-Causal and VCR-Causal, two new benchmarks specifically designed to isolate and rigorously evaluate VLMs' causal reasoning abilities. Our findings reveal that while VLMs excel in object and activity recognition, they perform poorly on causal reasoning tasks, often only marginally surpassing random guessing. Further analysis suggests that this limitation stems from a severe lack of causal expressions in widely used training datasets, where causal relationships are rarely explicitly conveyed. We additionally explore fine-tuning strategies with hard negative cases, showing that targeted fine-tuning can improve model's causal reasoning while maintaining generalization and downstream performance. Our study highlights a key gap in current VLMs and lays the groundwork for future work on causal understanding.

Innovations in digital intelligence are transforming robotic surgery with more informed decision-making. Real-time awareness of surgical instrument presence and actions (e.g., cutting tissue) is essential for such systems. Yet, despite decades of research, most machine learning models for this task are trained on small datasets and still struggle to generalize. Recently, vision-Language Models (VLMs) have brought transformative advances in reasoning across visual and textual modalities. Their unprecedented generalization capabilities suggest great potential for advancing intelligent robotic surgery. However, surgical VLMs remain under-explored, and existing models show limited performance, highlighting the need for benchmark studies to assess their capabilities and limitations and to inform future development. To this end, we benchmark the zero-shot performance of several advanced VLMs on two public robotic-assisted laparoscopic datasets for instrument and action classification. Beyond standard evaluation, we integrate explainable AI to visualize VLM attention and uncover causal explanations behind their predictions. This provides a previously underexplored perspective in this field for evaluating the reliability of model predictions. We also propose several explainability analysis-based metrics to complement standard evaluations. Our analysis reveals that surgical VLMs, despite domain-specific training, often rely on weak contextual cues rather than clinically relevant visual evidence, highlighting the need for stronger visual and reasoning supervision in surgical applications.

This paper develops a formal account of causal explanation, grounded in a theory of conversational pragmatics, and inspired by the interventionist idea that explanation is about asking and answering what-if-things-had-been-different questions. We illustrate the fruitfulness of the account, relative to previous accounts, by showing that widely recognised explanatory virtues emerge naturally, as do subtle empirical patterns concerning the impact of norms on causal judgments. This shows the value of a communication-first approach to explanation: getting clear on explanation's communicative dimension is an important prerequisite for philosophical work on explanation. The result is a simple but powerful framework for incorporating insights from the cognitive sciences into philosophical work on explanation, which will be useful for philosophers or cognitive scientists interested in explanation.

We evaluate methods for causal representation learning (CRL) on a simple, real-world system that satisfies the basic problem setup of CRL. The system consists of a controlled optical experiment producing a variety of measurements where the underlying causal factors---the control inputs to the experiment---are known, providing a ground truth. We select methods representative of different approaches to CRL and find that they all fail to consistently recover the underlying causal factors. To understand the failure modes of the evaluated algorithms, we perform an ablation on the data by substituting the real data-generating process with a simpler synthetic equivalent. The results reveal a reproducibility problem, as most methods already fail on this synthetic ablation despite its simple data-generating process. Additionally, we observe that common assumptions on the mixing function are crucial for the performance of some of the methods but do not hold in the real data. Our efforts highlight the contrast between the theoretical promise of the state of the art and the challenges in its application. We hope the benchmark serves as a simple, real-world sanity check to further develop and validate methodol- ogy, bridging the gap towards CRL methods that work in practice.

For two causal structures with the same set of visible variables, one is said to observationally dominate the other if the set of distributions over the visible variables realizable by the first contains the set of distributions over the visible variables realizable by the second. Knowing such dominance relations is useful for adjudicating between these structures given observational data. Here, we consider the problem of determining the partial order of equivalence classes of causal structures with latent variables relative to observational dominance. We provide a complete characterization of the dominance order in the case of three visible variables, and a partial characterization in the case of four visible variables. Our techniques also help to identify which observational equivalence classes have a set of realizable distributions that is characterized by nontrivial inequality constraints, analogous to Bell inequalities and instrumental inequalities. We find evidence that as one increases the number of visible variables, the equivalence classes satisfying nontrivial inequality constraints become ubiquitous. (Because such classes are the ones for which there can be a difference in the distributions that are quantumly and classically realizable, this implies that the potential for quantum-classical gaps is also ubiquitous.) Furthermore, we find evidence that constraint-based causal discovery algorithms that rely solely on conditional independence constraints have a significantly weaker distinguishing power among observational equivalence classes than algorithms that go beyond these (i.e., algorithms that also leverage nested Markov constraints and inequality constraints).

Causal knowledge can be used to support decision-making problems. This has been recognized in the causal bandits literature, where a causal (multi-armed) bandit is characterized by a causal graphical model and a target variable. The arms are then interventions on the causal model, and rewards are samples of the target variable. Causal bandits were originally studied with a focus on hard interventions. We focus instead on cases where the arms are conditional interventions, which more accurately model many real-world decision-making problems by allowing the value of the intervened variable to be chosen based on the observed values of other variables. This paper presents a graphical characterization of the minimal set of nodes guaranteed to contain the optimal conditional intervention, which maximizes the expected reward. We then propose an efficient algorithm with a time complexity of $O(|V| + |E|)$ to identify this minimal set of nodes. We prove that the graphical characterization and the proposed algorithm are correct. Finally, we empirically demonstrate that our algorithm significantly prunes the search space and substantially accelerates convergence rates when integrated into standard multi-armed bandit algorithms.

Existing algorithms for explaining the output of image classifiers use different definitions of explanations and a variety of techniques to find them. However, none of the existing tools use a principled approach based on formal definitions of cause and explanation. In this paper we present a novel black-box approach to computing explanations grounded in the theory of actual causality. We prove relevant theoretical results and present an algorithm for computing approximate explanations based on these definitions. We prove termination of our algorithm and discuss its complexity and the amount of approximation compared to the precise definition. We implemented the framework in a tool ReX and we present experimental results and a comparison with state-of-the-art tools. We demonstrate that ReX is the most efficient black-box tool and produces the smallest explanations, in addition to outperforming other black-box tools on standard quality measures.

We introduce a rigorous mathematical framework for Granger causality in extremes, designed to identify causal links from extreme events in time series. Granger causality plays a pivotal role in uncovering directional relationships among time-varying variables. While this notion gains heightened importance during extreme and highly volatile periods, state-of-the-art methods primarily focus on causality within the body of the distribution, often overlooking causal mechanisms that manifest only during extreme events. Our framework is designed to infer causality mainly from extreme events by leveraging the causal tail coefficient. We establish equivalences between causality in extremes and other causal concepts, including (classical) Granger causality, Sims causality, and structural causality. We prove other key properties of Granger causality in extremes and show that the framework is especially helpful under the presence of hidden confounders. We also propose a novel inference method for detecting the presence of Granger causality in extremes from data. Our method is model-free, can handle non-linear and high-dimensional time series, outperforms current state-of-the-art methods in all considered setups, both in performance and speed, and was found to uncover coherent effects when applied to financial and extreme weather observations.

We study the problem of restricting a Markov equivalence class of maximal ancestral graphs (MAGs) to only those MAGs that contain certain edge marks, which we refer to as expert or orientation knowledge. Such a restriction of the Markov equivalence class can be uniquely represented by a restricted essential ancestral graph. Our contributions are several-fold. First, we prove certain properties for the entire Markov equivalence class including a conjecture from Ali et al. (2009). Second, we present several new sound graphical orientation rules for adding orientation knowledge to an essential ancestral graph. We also show that some orientation rules of Zhang (2008b) are not needed for restricting the Markov equivalence class with orientation knowledge. Third, we provide an algorithm for including this orientation knowledge and show that in certain settings the output of our algorithm is a restricted essential ancestral graph. Finally, outside of the specified settings, we provide an algorithm for checking whether a graph is a restricted essential graph and discuss its runtime. This work can be seen as a generalization of Meek (1995) to settings which allow for latent confounding.

Existing evaluations of tabular synthesis models rely primarily on low-order statistics and downstream task performance, leaving multivariate causal relationships that go beyond pairwise correlations largely unmeasured. We argue that a systematic evaluation on high-order structural information is a crucial first step in addressing this issue in tabular data synthesis. In this paper, we present high-order structural causal information as a natural form of prior knowledge and introduce a benchmark framework to evaluate tabular synthesis models. This framework allows us to generate benchmark datasets through a flexible range of data generation processes, allowing for the training of tabular synthesis models using these datasets for further evaluation. We propose multiple benchmark tasks, high-order metrics, and causal inference tasks as downstream tasks for evaluating the quality of synthetic data generated by the trained models. Our experiments demonstrate the effectiveness of the benchmark framework in evaluating the model's ability to capture high-order structural causal information. Furthermore, our benchmarking results provide an initial assessment of state-of-the-art tabular synthesis models. These results reveal significant gaps between ideal and actual performance and highlight how baseline methods differ. We position the framework as a controlled diagnostic benchmark for causal fidelity, complementing existing low-order and downstream evaluations. We open source the benchmark framework, including both code and data along with documentation, to support further research in this area.

The ability to understand causality significantly impacts the competence of large language models (LLMs) in output explanation and counterfactual reasoning, as causality reveals the underlying data distribution. However, the lack of a comprehensive benchmark currently limits the evaluation of LLMs' causal learning capabilities. To fill this gap, this paper develops CausalBN-Bench based on data from the causal research community, enabling comparative evaluations of LLMs against traditional causal learning algorithms. To provide a comprehensive investigation, we offer three tasks of varying difficulties, including correlation, causal skeleton, and causality identification. Evaluations of 19 leading LLMs reveal that, while closed-source LLMs show potential for simple causal relationships, they significantly lag behind traditional algorithms on larger-scale networks ($>50$ nodes). Specifically, LLMs struggle with collider structures but excel at chain structures, especially at long-chain causality analogous to Chain-of-Thought techniques. This supports the current prompt approaches while suggesting directions to enhance LLMs' causal reasoning capability. Furthermore, CausalBN-Bench incorporates background knowledge and training data into prompts to thoroughly unlock LLMs' text-comprehension ability during evaluation, whose findings indicate that, LLM understand causality through semantic associations with distinct entities, rather than directly from contextual information or numerical distributions.

Causal video question answering (QA) has garnered increasing interest, yet existing datasets often lack depth in causal reasoning. To address this gap, we capitalize on the unique properties of cartoons and construct CausalChaos!, a novel, challenging causal Why-QA dataset built upon the iconic "Tom and Jerry" cartoon series. Cartoons use the principles of animation that allow animators to create expressive, unambiguous causal relationships between events to form a coherent storyline. Utilizing these properties, along with thought-provoking questions and multi-level answers (answer and detailed causal explanation), our questions involve causal chains that interconnect multiple dynamic interactions between characters and visual scenes. These factors demand models to solve more challenging, yet well-defined causal relationships. We also introduce hard incorrect answer mining, including a causally confusing version that is even more challenging. While models perform well, there is much room for improvement, especially, on open-ended answers. We identify more advanced/explicit causal relationship modeling & joint modeling of vision and language as the immediate areas for future efforts to focus upon. Along with the other complementary datasets, our new challenging dataset will pave the way for these developments in the field. Project Page: https://github.com/LUNAProject22/CausalChaos

Causal discovery aims to learn causal structures up to certain symmetries. Diverse populations or changing environments give rise to heterogeneous data in the following sense: each population/environment is a ``source'' which idiosyncratically determines the forms of causal effects. From this perspective, the source is a latent common cause for every observed variable. While some methods for causal discovery can work around latent confounding in special cases, a global confounder poses a significant challenge. The only known ways to deal with latent global confounding involve making assumptions that limit structural equations and/or noise functions. We demonstrate that globally confounded causal structures can still be identified with arbitrary structural equations and noise functions, so long as the number of latent classes remains small relative to the size and sparsity of the underlying DAG. The approach relies on agglomerating variables into large-enough matrices of moments, whose ranks directly reveal graphical properties of the causal structure. We also provide a statistical test to test the rank of these matrices.

Statistical fairness metrics in AI-driven credit decisions conflate two causally distinct mechanisms: discrimination operating directly from a protected attribute to a credit outcome, and structural inequality propagating through legitimate financial features. We formalise this distinction using Pearl's framework of natural direct and indirect effects applied to the credit decision setting. Our primary theoretical contribution is an identification strategy for natural direct and indirect effects under treatment-induced confounding -- the prevalent setting in which protected attributes causally affect both financial mediators and the final decision, violating standard sequential ignorability. We show that interventional direct and indirect effects (IDE/IIE) are identified under the weaker Modified Sequential Ignorability assumption, and prove that IDE/IIE provide conservative bounds on the unidentified natural effects under monotone indirect treatment response. We propose a doubly-robust augmented inverse probability weighted (AIPW) estimator for IDE/IIE with semiparametric efficiency properties, implemented via cross-fitting. An E-value sensitivity analysis addresses residual confounding on the direct pathway. Empirical evaluation on 89,465 real HMDA conventional purchase mortgage applications from New York State (2022) demonstrates that approximately 77% of the observed 7.9 percentage-point racial denial disparity operates through financial mediators shaped by structural inequality, while the remaining 23% constitutes a conservative lower bound on direct discrimination. The open-source CausalFair Python package implements the full pipeline for deployment at resource-constrained financial institutions.

Large language models are being widely used across industries to generate text that contributes directly to key performance metrics, such as medication adherence in patient messaging and conversion rates in content generation. Pretrained models, however, often fall short when it comes to aligning with human preferences or optimizing for business objectives. As a result, fine-tuning with good-quality labeled data is essential to guide models to generate content that achieves better results. Controlled experiments, like A/B tests, can provide such data, but they are often expensive and come with significant engineering, logistical, and ethical challenges. Meanwhile, companies have access to a vast amount of historical (observational) data that remains underutilized. In this work, we study the challenges and opportunities of fine-tuning LLMs using observational data. We show that while observational outcomes can provide valuable supervision, directly fine-tuning models on such data can lead them to learn spurious correlations. We present empirical evidence of this issue using various real-world datasets and propose DeconfoundLM, a method that explicitly removes the effect of known confounders from reward signals. In simulation experiments, DeconfoundLM more accurately recovers causal relationships and mitigates failure modes of methods that assume counterfactual invariance, achieving over 16% higher objective score than ODIN and other baselines, when entangled confounding is present. Please refer to the project page for code and related resources.