Human Visual Cortex

Cortical hypometabolism measured by Fluorodeoxyglucose Positron Emission Tomography (FDG-PET) is a highly sensitive biomarker for dementia diagnosis. However, high costs, radiation exposure, and limited accessibility constrain its clinical utility. While cross-modal synthesis from Magnetic Resonance Imaging (MRI) offers a promising alternative, existing volumetric generation methods do not explicitly account for the highly folded cortical geometry, where disease-related patterns predominantly reside. To address this, we introduce a novel surface-based diffusion bridge framework DB-SUiT for MRI-to-PET translation that operates natively on the cortical manifold. A conditional Spherical U-shaped vision Transformer (SUiT) is specifically designed to model the intricate cross-modal relationships while preserving surface topology. It combines spherical convolutional encoders for multi-scale surface feature extraction with bottleneck Transformers to capture long-range spatial dependencies, while incorporating demographic and subcortical conditions to refine the synthesis. Evaluated on two datasets, including subjects with different dementia types, DB-SUiT demonstrates high-fidelity synthesis that substantially outperforms other baselines. In automated dementia classification, synthesized PET surfaces improve performance over MRI by 14.2% and PET volumes by 11.3%, approaching the performance of real PET surfaces. In a blinded reader study, synthetic PET achieved 85.5% diagnostic accuracy, compared with 75.8% for MRI and 95.2% for real PET. This further demonstrates cross-cohort and cross-pathology generalization, as the model was evaluated without retraining on an external cohort that included a dementia subtype not represented during training. Our code is available at https://github.com/ai-med/DB-SUiT.

The hippocampus, a key brain region for learning and memory, exhibits rich structural diversity, sparse communication, and robust dynamics with incredible energy efficiency. It offers promising insights for novel computing capabilities, particularly when co-designed with emerging hardware technologies. In this work, we draw inspiration from the rodent CA3 hippocampal subregion to develop the first spiking neural network with neuronal diversity and biologically-realistic resting state dynamics demonstrated on memristor hardware. We propose a network downscaling methodology utilizing a 4-prong objective function and demonstrate a small-scale CA3-inspired network with 179 Izhikevich-modeled neurons, 3 neuronal types and 17,996 synapses with similar resting-state dynamics as the orders-of-magnitude larger full-scale network. The small-scale network is mapped to an FPGA/memristor platform using a greedy algorithm and 18,316 memristors. Benefiting from memristor noise, the hardware implementation shows continuous periodic behavior, outperforming simulated hardware. This work showcases the potential of biologically-realistic algorithms on emerging hardware for neuromorphic computing.

Most knowledge of graphical perception comes from behavioral studies. Understanding from a neural perspective is much more limited due in part to neuroimaging studies' expensiveness and difficulty to conduct. In this paper, we evaluate whether Meta's Tribe V2 neural encoding model can recover neural contrasts from a visualization fMRI study. Specifically, we evaluate Tribe V2 through a conceptual replication of the visualization-viewing component of a prior comparison of Bubble charts and three-dimensional Surface charts in color and grayscale. We generate TRIBE-predicted cortical responses for the original stimuli and compare the resulting contrasts with those reported in the human study. The model reproduced the direction of 11 of 14 reported cortical effects, with agreement concentrated in visual-processing regions. This agreement characterizes the model's alignment with the prior human-generated fMRI results rather than independently confirming them. We discuss the limitations encountered when working with this model for in-silico replication and hope to encourage future work exploring this new avenue for neuroimaging studies in visualization. Supplemental materials are available at https://osf.io/8a96x/.

Finger-level motor decoding is important for naturalistic brain-computer interface (BCI) control, yet individual-finger decoding from scalp electroencephalography (EEG) remains challenging because finger representations are spatially close in the sensorimotor cortex and blurred by volume conduction. Leveraging the high spatial resolution of functional MRI (fMRI), we introduce fMRI Representation-Informed Shared-Space Training (FRIST), a two-stage EEG decoding framework that first learns fMRI-informed spectral projections from simultaneous EEG-fMRI recordings and then uses fMRI-derived class geometry to guide residual refinement of EEG predictions. FRIST transfers information across recordings through shared finger labels without requiring paired trials and uses only EEG at inference. We evaluated 12 able-bodied participants during movement execution (ME) and motor imagery (MI) under two-class and three-class chronological session-held-out decoding simulating the online scenario. Using EEGNet as the EEG feature extractor, FRIST increased group average accuracy from 66.93% to 74.53% for two-class ME, from 44.83% to 56.58% for three-class ME, from 80.78% to 85.63% for two-class MI, and from 60.93% to 69.90% for three-class MI compared with the EEG-only EEGNet baseline. FRIST is also shown to improve EEG-only decoding when the target participant's own fMRI data were unavailable. FRIST also generalized across multiple EEG decoding backbones, reaching 87.40% in two-class MI and 72.54% in three-class MI with EEG Conformer as the EEG feature extractor. These findings indicate that fMRI provide useful spatial constraints for EEG representation learning. FRIST improves noninvasive EEG-based finger-level BCI decoding, offering a multimodal strategy for integrating the spatial specificity of fMRI with real-time applicability of EEG.

Activation steering turns localized representations into control directions, but localization alone does not reveal whether a direction has a selective operating regime. We introduce Predictive Memory Localization (PML), which treats the measured-grid intervention path as the predictive object of memory localization. PML separates random-calibrated target movement from semantic-neighbor and capability damage, and compares static localization and supervised geometry with a strength-disjoint low-dose causal response. Our frozen study covers 3,000 records from nine datasets and fourteen domains, yielding 30,000 distinct record-direction-layer paths and 210,000 distinct path-strength evaluations. At layer 7, the geometry-derived RFM/AGOP direction reaches 13.1% target-any and 12.3% clean-any, exceeding random by 3.6 and 3.4 percentage points under a record-paired bootstrap. Across record-, dataset-, and domain-grouped splits, responses at $|α|=0.1$ are the strongest signal for outcomes at disjoint strengths $|α|\in\{0.25,0.5\}$. On held-out records, a predictor-driven selector chooses a coefficient or abstains, improves utility and reduces semantic-neighbor damage relative to a train-tuned fixed-strength policy, and avoids most evaluations in a dense scan. Across three residual-norm-matched base models, learned directions retain selective-path gains and low-dose responses yield 0.801-0.828 record-held-out macro AUROC. PML therefore turns memory localization into a falsifiable forecast of margin-level selective outcomes and a risk-aware intervention decision.

Representational similarity analysis (RSA) is increasingly used to ask which learning rules give convolutional networks brain-like representations. Because biologically plausible rules such as feedback alignment, predictive coding and STDP do not scale, studies that include them train small networks on small images (typically 32x32 CIFAR) and then compare them to brain responses modeled at much higher resolution. We find that a common result in this setting, that untrained or locally trained networks rival or beat backpropagation at early visual cortex, depends strongly on the resolution at which the network is evaluated. The V1 gap between an untrained network and a backpropagation-trained one widens from -0.001 +/- 0.007 at the 32px training resolution to +0.044 +/- 0.006 at 224px, growing monotonically across six resolutions (n=5 seeds). It holds in human fMRI and, directionally, in single-seed macaque electrophysiology, along the training trajectory, and for an ImageNet ResNet-50 and a Swin-Tiny transformer trained at 224px. Four candidate mechanisms are tested and none accounts for it: train/eval resolution matching, low-level Gabor and pixel structure, the normalization state of the untrained baseline, and convergence of the pooled descriptor toward a global brightness statistic; three are excluded by interventions holding the convolutional weights bit-identical. A fifth experiment locates the effect: capping image detail at the training resolution while letting the pooled positions grow 12-fold removes about 90% of it, so the dependence is carried by image detail rather than by pooling. Separately, a single scalar luminance value per image reaches rho = 0.075 against the V1 RDM, essentially matching the untrained network's 0.076, which bounds what this style of comparison can resolve. The one learning effect that holds across resolution is backprop above untrained, at LOC.

Stochastic cortical self-reconstruction (SCSR) enables personalized mapping of gray matter atrophy, a hallmark of neurodegenerative disorders such as Alzheimer's disease (AD), onto high-resolution cortical surfaces. Unlike conventional normative modeling approaches, which typically operate at a coarse regional level and remain inherently constrained by the covariates included during training, SCSR estimates an individualized healthy reference directly from the observed cortical thickness at the vertex level. This allows the detection of subtle, subject-specific deviations from healthy cortical shape. In this work, we investigate the generalization and transferability of SCSR, originally trained on UK Biobank (UKB) data, to an independent Chinese population dataset. Specifically, we evaluate the ability of SCSR-derived Z-scores to discriminate between healthy scans, individuals with mild cognitive impairment (MCI), and patients with AD, while also assessing model robustness across the lifespan. We compare four training strategies: direct application of the UKB-trained model, fine-tuning on Chinese data, training from scratch, and joint training on UKB and Chinese cohorts. As reconstruction backbones, we consider both a multilayer perceptron (MLP) and a Spherical UNet (SUNet). Our results demonstrate that SCSR provides robust detection of cortical atrophy in the Chinese population across all evaluated models. The highest discriminative performance was achieved by the fine-tuned SUNet model (average pairwise AUC = 0.848), followed closely by the UKB-trained SUNet. Moreover, reconstruction errors remained low across the lifespan, even when the training population exhibited a substantially narrower age distribution, indicating strong cross-population transferability.

Predicting how a subcortical structure's shape will evolve from a few prior scans could support prognosis and clinical-trial enrichment. Existing longitudinal mesh predictors either extrapolate shape trajectories via high-dimensional embeddings or regress vertex deformations directly. We instead predict the surface's intrinsic geometry in continuous time: a single per-structure graph network predicts the future per-vertex first fundamental form (metric tensor) for an arbitrary causal multiple-visit history and an arbitrary prediction horizon, conditioned on a Fourier encoding of the lead time. The predicted metric is decoded into a surface by a differentiable As-Rigid-As-Possible solver, and the model is trained end-to-end on the rigid-aligned vertex error. Training through the reconstruction keeps the decoded prediction a valid surface and consistently improves it. On 14 subcortical structures from the ADNI dataset, the proposed mesh evolution model (MT-GNN) predicts best among the evaluated methods at every horizon ($-2.29\%$ mean vertex error vs. the temporal mean, $p{=}6.1{\times}10^{-5}$, beating it on 14/14 structures), ahead of geodesic shape regression (DCM, $-0.19\%$) and a mesh transformer (TransforMesh, $-0.45\%$; $p{=}1.2{\times}10^{-4}$), with the lead widening as the horizon grows.

Vision transformers (ViTs) have become the de facto standard for image encoding across many perception tasks. Despite their empirical success, it remains mechanistically unclear how they encode low-level features, given their lack of inductive biases: ViTs process information globally rather than relying on local structure. Biological visual systems, in contrast, build low-level features, such as orientation selectivity in the primary visual cortex, by combining information from small, localized regions of the visual field. These features are general-purpose representations, shared and required across multiple specialized neural pathways, unlike higher-level, task-specific semantic features. This raises the question if such biologically-grounded features arise in ViTs. In this work, we systematically study how orientation selectivity emerges in ViTs by introducing a suite of neuroscience-inspired metrics: representational similarity score (RSS), orientation recruitment score (ORS), and orientation tuning bandwidth to quantify how orientation is encoded in representational geometry and as a function of model depth. Through extensive analysis, we find that: (1) the training paradigm is the strongest determinant of orientation selectivity, with models sharing an objective, peaking at comparable relative depths regardless of scale (2) many units are orientation-selective early in training, with early-to-middle layers recruiting more such units over time, while deeper layers lose selectivity and broaden their tuning toward semantic encoding and (3) our metrics offer a mechanistic heuristic for how many layers to unfreeze for best downstream generalization. Our framework presents a way to track biologically-grounded features during ViT training, probes how desired properties are encoded in transformer representations, and builds a systematic understanding of how ViTs generalize across tasks.

Short segments of perceived speech can be retrieved from non-invasive magnetoencephalographic (MEG) recordings by deep networks trained with a CLIP-style objective against wav2vec 2.0 audio embeddings. Yet their weights do not map onto electrophysiological quantities, and it remains unclear which speech properties drive retrieval. We build on a high-performing MEG-to-audio retrieval architecture but redesign both its front end and decoder. Its spatial attention operates on a flattened sensor layout; we replace it with spherical harmonics defined on the three-dimensional MEG helmet geometry. We reduce the subject-specific representation from 270 to 25 branches, add a temporal filter to each branch to match it to a neuronal source in space and time, and make the convolutional decoder shallower. Ocular and cardiac components are removed before training to reduce the risk of stimulus-locked shortcuts. On MEG-MASC, the model reaches 39.75 +/- 0.34% Top-1 accuracy among 1005 candidates across six trained solutions, with about 20 times fewer decoder parameters. Its weights map to source space, recovering generators consistent with the speech-perception network, while left-lateralized branches carry higher-frequency rhythmic components not evident on the right. Paired MEG occlusion shows that 15 of 19 stimulus features contribute, with the largest effects for silence, sound intensity, vowels, and acoustic onsets. Random word lists behave oppositely: substituting narrative MEG into them improves retrieval, indicating that activity without narrative structure carries less recoverable information than activity during coherent speech. The wav2vec target can be reduced to about twelve learned feature dimensions without loss of accuracy, whereas strong temporal compression causes a clear loss. Together, source mapping and input interventions reveal what drives retrieval.

Predictive coding offers a powerful framework for cortical computation, yet scalable implementations that respect both Bayesian exactness and neurobiological constraints remain scarce. We bridge this gap by formally connecting predictive coding to Recursive Gaussian Processes (RGPs). RGPs employ a single Gaussian process $g(t, \cdot)$ indexed by layer index and input value, preventing the representational collapse of standard deep Gaussian processes while allowing learnable cross-layer dependence via $r_{1g}$. We demonstrate that RGPs intrinsically implement hierarchical Bayesian inference, uncertainty propagation, and precision-weighted prediction error. Critically, we map RGP components---the shared GP, spike-and-slab variable selection, and MCMC dynamics---onto the canonical cortical microcircuit, providing a neurobiological substrate for these computations. Drawing on the free energy principle, we show that RGP inference minimizes variational free energy, formally linking Bayesian mechanics to neuronal dynamics. Our synthesis positions RGPs as both a principled computational tool and a candidate model for the brain's predictive machinery, generating testable predictions for laminar-specific dynamics and spectral asymmetries between feedforward and feedback processing.

Predictive coding offers a powerful theory of cortical computation, but corresponding scalable algorithmic implementations for artificial intelligence have remained elusive. This paper introduces the Bayesian reflex, a computational framework that directly instantiates predictive coding through three pillars: belief maintenance via hierarchical generative models, sequential Bayesian updating via prediction-error minimization, and uncertainty-driven action via active inference. We show that recent breakthroughs---ellipsoidal decomposition for exact $i.i.d.$ sampling, recursive Gaussian processes for deep hierarchical inference, and derivative-aware Bayesian optimization---provide the missing algorithmic ingredients. The resulting framework enables mathematically principled, scalable, and brain-inspired continual learning, perception, and decision-making. We illustrate its versatility through applications ranging from climate model evaluation to prime number discovery, offering a blueprint for truly adaptive artificial intelligence.

The emergence of orientation selectivity in the primary visual cortex (V1) remains a central question in computational neuroscience. Shirazi's Bayes-Markov model proposed a probabilistic explanation for how orientation-selective inhibition can arise from non-oriented lateral geniculate nucleus (LGN) inputs through local inference. In that formulation, the activity pattern of striate cortical inhibitory (SCI) cells is estimated from the LGN activity pattern by a maximum a posteriori (MAP) criterion over a two-layer hierarchical Markov random field, and the resulting inference is implemented through a local parallel relaxation algorithm. We provide a computationally explicit re-implementation and quantitative simulation study of this framework. We reconstruct the mathematical model, describe its fully LGN-driven update rule, and implement a vectorized simulation framework that preserves the original local clique operations while making systematic parameter sweeps feasible. We evaluate the model using orientation tuning curves, an orientation selectivity index (OSI), controlled LGN noise perturbations, contrast tests, and model-variant comparisons. We further add a spiking SCI-layer realization using leaky integrate-and-fire and Hodgkin-Huxley neurons to examine whether the rate-coded SCI field can be expressed through temporally explicit neural activity. The simulations support the central qualitative behavior of the Bayes-Markov framework: sharp orientation selectivity, robustness to moderate LGN noise, and a biologically interpretable proof-of-concept spiking realization of the inferred inhibitory field.

Functional magnetic resonance imaging (fMRI) is a widely used technique for studying the brain. Recent methods that utilize graph neural networks (GNNs) for analysis of brain functional connectivity have shown great potential for the classification of brain disorders, such as Alzheimer's disease (AD). However, these methods often assume a preset number of functional modules across all subjects, which overlooks inter-subject variability. In addition, the discovered modules are rarely used to directly guide the learned connectivity patterns. Here, to address these issues, we propose a Meta Probabilistic Pooling GNN (MPP-GNN). We frame the model's task as a coupled, bilevel optimization that performs adaptive graph partitioning hierarchically to discover subject-specific modules and then uses the discovered brain modules as an explicit prior to guide edge refinement and representation learning. We validate MPP-GNN on two public datasets for AD classification, achieving the highest AUC in comparison to established baselines for both datasets. Furthermore, our analysis demonstrates that MPP-GNN shows significant alignment with the canonical functional-network organization defined by the Yeo brain atlas and reveals a network-level dedifferentiation pattern for AD.

AI researchers describe state-of-the-art models as one thing repeated at scale: the Transformer, wired identically for text, pixels, or speech. Neuroscientists describe the cortex as a mosaic - dense Layer 4 in visual cortex for spatial encoding, thick Layers 5/6 in motion cortex for temporal integration - different jobs solved by different structures. This paper argues the gap is a structural error, not a stylistic one, and is measurable. A century of cytoarchitecture, from Brodmann to single-cell Patch-seq, shows distinct cognitive functions are implemented by qualitatively different structures, not by rescaling one template. The convolutional neural network is the field's own proof: local receptive fields and hierarchical depth encoded this prior directly, reaching strong image recognition on far less data than later architectures needed. The paper traces how this lesson was discarded: the "Hardware Lottery" made the Transformer the path of least resistance, not the principled choice, and Mixture-of-Experts, often cited as diversity, in fact partitions parameters among identical experts. A functionalist analysis shows the Transformer is best understood as a functional analog of the hippocampal formation, not a general-purpose cortex - the same mistake as treating cortex as one giant Broca's area, except the field has now standardized on a giant hippocampus, applied to tasks it was never built for: audition, executive gating, working memory. The paper closes with an alternative: a Heterogeneous Topological Network, a System of Systems in which distinct modules keep the inductive bias their computation demands and communicate through standardized interfaces. This is a design discipline for AI architects, not cognitive science: specify modularity before training, using structural evidence as a design input rather than reverse-engineering architecture from a trained model's behavior.

ECoG-based visual semantic decoding enables inference of semantic interpretation of visual perception from complex, noisy brain activity. This study examines the feasibility of visual semantic decoding using an end-to-end deep learning framework using electrocorticography (ECoG). Specifically, the decoding task is to predict visual categories from video stimuli using time-series neural inputs. A previously collected ECoG dataset from participants ($n=17$) with drug-resistant epilepsy is used for analysis. With fewer than 50 training samples per visual category, this study evaluates multiple deep learning approaches, artificial neural network architectures, and frequency-band filtered inputs. The best-performing approach is analyzed to shed light on the discriminative information it relies on across spectral, temporal, and cortical dimensions. The selected decoding system uses mixup augmentation, a Transformer-based encoder, and high-gamma (80-150 Hz) inputs with a 900 ms post-stimulus window. Further analysis shows that early visual cortex (V2-V4), ventral stream visual cortex, MT+ complex with neighbouring visual areas, and lateral temporal cortex contributed substantially to decoding performance. This study demonstrates that an end-to-end deep learning framework can yield promising decoding performance from dynamic visual stimuli without handcrafted features, while the model behavior remains interpretable through spectral, temporal, and cortical dimensions, which are broadly consistent with established neuroscience knowledge.

Recovering high dynamic range (HDR) radiance from a single standard dynamic range (SDR) image is highly ill-posed. Extreme luminance variation and severe quantization in dark regions make accurate reconstruction challenging, often leading to visual artifacts and color distortions. To address this problem, we propose Bio-SFT, a bio-inspired spiking frequency transformer for single-image HDR reconstruction. Bio-SFT incorporates three biologically motivated components. First, a learnable Naka--Rushton retinal adaptation frontend stabilizes the input under complex lighting conditions. Second, an explicit Parvo--Magno split introduces asymmetric Parvo-to-Magno guidance, allowing high-frequency structural cues to modulate low-frequency reconstruction. Third, an event-driven SNN hard gating module applies all-or-none spiking to suppress dark-region noise while preserving structural details. The module is trained with a sparsity prior to encourage efficient feature utilization. Built for end-to-end training within a transformer backbone, these lightweight components provide strong parameter efficiency. Experiments on HDRTV1K show that Bio-SFT achieves competitive perceptual quality and consistently improves HDR-VDP-3 and $ΔE_{ITP}$ while reducing artifact propagation in symmetric guidance pipelines.

This paper reports a convergence neither program was looking for. Marcus's The Algebraic Mind named three things any architecture needs -- operations over variables, recursive structure, and individuals distinct from kinds -- showed multilayer perceptrons have none, and left a register-and-treelet implementation as conjecture. Thagard's Brain-Mind ran it from the other end, making binding the mechanism from which the whole of mind is assembled, and circular convolution load-bearing. Marcus leaves his register algebra open; Thagard's is lossy, degrading under the very recursion his own account demands. VaCoAl is a hyperdimensional computing architecture built end-to-end on XOR-and-shift over GF(2) via primitive-polynomial LFSRs; PyVaCoAl is its extended software realization (all results here); the silicon substrate exists as CASRAM. Bind(R,F) = R XOR Shift(F) is exactly reversible and non-commutative: it supplies all three pillars at fixed dimension and removes convolution's depth degradation. Capability: exact reversible binding at O(N) yields compositional generalization with post-hoc auditability, which no lossy or learned substrate offers. Necessity: two independent architecture programs and the dentate gyrus-CA3 circuit require the same algebra -- convergence, not biomimicry. New here: discrimination and failure-tolerance are one. Repair every collision (RR = 1) and the system is bit-identical to a hash dictionary: candidates become indistinguishable and the confidence path-integral collapses; a memory that never fails keeps no record of which routes were hard. Position: we do not surpass large language models but supply the auditable, multi-hop relational reasoning embeddings lack. No consciousness is implemented and no cognitive experiment reported; bit-exactness holds in silicon, approximately under biological noise; speed and power remain unbenchmarked.

Naturalistic language comprehension requires listeners to process both local probabilistic expectations and contextual semantic relations. This study tested whether contextual semantic relevance, measuring how strongly a target word relates to its recent semantic context, is associated with fMRI BOLD responses independently of word surprisal and lexical, timing, acoustic, and prosodic controls. We analyzed two public datasets: Alice (23 participants, one narrative) and Narratives (47 participants, 185 runs, four stories) using FIR/deconvolution and generalized additive mixed models. In Alice, semantic relevance was significant across all ROIs in FIR analyses, whereas surprisal was not. In GAMMs, both predictors showed broad significance. In Narratives, both predictors showed comparable spatial prevalence across ROIs. Semantic relevance showed robust BOLD associations across both datasets, with a particularly strong advantage over surprisal in the timing-sensitive Alice FIR analysis. The regionally heterogeneous direction of semantic relevance effects, with negative effects in posterior semantic regions and positive effects in frontal integration regions, suggests involvement of functionally distinct neural processes rather than a single uniform mechanism. These findings indicate that contextual semantic fit and local probabilistic expectation make partially distinct, dataset-dependent contributions to hemodynamic responses during naturalistic listening.

We describe a model of perceptual inference in primary visual cortex (V1) equivalent to a minimal diffusion model whose function can be readily understood from its parameters. The model is based on sparse coding with a non-factorial prior over latent variables in the form of an unconstrained, pairwise interaction matrix, extending standard sparse coding inference to a general recurrent dynamical system. We efficiently train these recurrent dynamics using a denoising score-matching objective and implicit differentiation. After training on natural images, the learned interaction matrix mirrors the structure of horizontal connections in superficial layers of V1 that link neurons of similar orientation tuning. This model exhibits exceptionally good denoising performance, restoring image features such as extended contours amid extreme visual ambiguity, nearly matching the behavior of standard, black-box diffusion architectures in generalization regime. Owing to the model's simplicity, the network's Jacobian can be decomposed directly in terms of the interaction matrix between latent variables, revealing mechanistically how the recurrent dynamics assign high probability over a continuous family of natural structural deformations. Intriguingly, within this circuit, a large fraction of latent variables learn to disconnect from visual input altogether, essentially forming a hierarchical representation that appears to enforce global consistency among image features. Together, the model and results bridge two distinct domains: for neuroscience, it generates concrete, testable hypotheses regarding functional connectivity in recurrent neural circuits during perceptual inference tasks; for machine learning, it elucidates the internal mechanisms learned by diffusion models that allow them to generate infinitely many novel images from a finite training set.

The primate visual system is typically divided into two streams - the ventral stream, responsible for object recognition, and the dorsal stream, responsible for encoding spatial relations and motion. Recent studies have shown that convolutional neural networks (CNNs) pretrained on object recognition tasks are remarkably effective at predicting neuronal responses in the ventral stream, shedding light on the neural mechanisms underlying object recognition. However, similar models of the dorsal stream remain underdeveloped due to the lack of large scale datasets encompassing dorsal stream areas. To address this gap, we present STSBench, a dataset of large-scale, single neuron recordings from over 2,000 neurons in the superior temporal sulcus (STS), a nearly 50-fold increase over existing dorsal stream datasets, collected while Rhesus macaques viewed thousands of unique, natural videos. We show that our dataset can be used for benchmarking encoding models of dorsal stream neuronal responses and reconstructing visual input from neural activity.

Robust and accurate neural decoders are integral to neurotechnologies such as brain-computer interfaces and closed-loop experiments. Recent work has shown that tokenizing neural data at the spike level facilitates multi-session pretraining and delivers state-of-the-art decoding performance. However, current spike-based models are restricted to supervised learning (SL), limiting training to datasets with paired behavioural labels. To address this limitation, we introduce MOJO (Masked autOencoder-based JOint training), a training framework for spike-tokenizing models that jointly leverages self-supervised learning (SSL) via masked autoencoding and SL objectives. We evaluate MOJO on three spiking datasets spanning monkey motor cortex during reaching tasks and multi-regional mouse recordings during vision and decision making tasks, demonstrating superior performance over purely SL-trained models. This improvement is especially pronounced when training with limited labelled data, particularly in few-shot finetuning, where only a small amount of labelled data from a new session is available. Incorporating SSL also yields more interpretable neuronal representations, improving performance on brain region classification and spike-statistics prediction without explicit optimization for these tasks. We further show that MOJO generalizes beyond spiking data to human electrocorticography during speech, where it continues to outperform purely SL-trained models and achieves performance comparable to neuro-foundation models (NFMs) designed specifically for continuous signals. Overall, augmenting spike-tokenizing models with SSL improves performance in label-impoverished settings and enables the use of unlabelled data across various tasks and species, while generalizing to other neural modalities. These results suggest a path towards more flexible and scalable data usage when training NFMs.

Decoding brain activity is useful for characterizing brain processes and understanding the functional architecture underlying cognition. However, the inter-individual variability in brain response patterns limits the development of decoders that generalize across individuals. A solution to this challenge is functional alignment: aligning functional data across individuals before training population-level decoders. The core issue is to strike the balance between aligning functional features and preserving the anatomical structure, while maintaining computational efficiency. We introduce a new functional alignment method for fMRI, SpectralOT, that embeds cortical geometry into Laplace-Beltrami eigenmodes along functional data to regularize the alignment.

We model human motor cortex during a wrist-extension BCI task as a port-Hamiltonian system (pHS): a conservative interconnection (gyroscopic coupling between neural phasors) plus a dissipative port (power-law energy decay driven by a GNN surrogate). A metriplectic integrator evolves the phasor state; a Fluctuation--Dissipation-consistent noise channel produces stochastic trajectories at body temperature. Training on \FitTrainN\ real EEG cycles (PhysioNet EEGMMIDB, 3 held-out subjects) reaches a test MSE of \FitTestMSE\ and passes three scale-free criticality rungs: near-critical branching ratio ($σ\approx1$), $1/f$ power-law spectrum, and long-range DFA correlations. The model generates closed-loop neuromodulation signals that restore phase-locking in silico when applied to de-synchronised inputs, suggesting a path toward structure-preserving BCI decoders.

Recent Vision-Language Models capture increasingly complex aspects of human cognition. Here we ask whether this alignment extends to reward valuation, which we assess in a mechanistic framework built on clinical tests that were developed to evaluate anhedonia and motivational deficits in major depressive disorder. In the brain, anhedonia is frequently linked to dysregulation in the Nucleus Accumbens (NAc) and the broader dopaminergic reward system. While neuroimaging has localized these deficits, establishing a causal link between NAc activity and specific behavioral symptoms remains a challenge. We use these ideas from neuroscience to functionally identify reward-anticipatory units in vision language models, and test their causal role via targeted perturbations. Perturbing NAc-selective units induces behavioral effects that mirror human anhedonia: the model shifts toward low-effort, low-reward options in effort-based decision-making tasks. Crucially, our results reflect a specific deficit in reward valuation and anticipation rather than a loss of task capability: the perturbed model maintains baseline performance when reward-based choice is removed. This induced vulnerability further aligns with clinical anhedonia and motivation scales, including DARS and MAP-SR. Taken together, these results reveal reward valuation circuits in AI models that parallel those in humans.

Parkinson's disease (PD) affects millions worldwide and causes severe motor symptoms. Adaptive deep brain stimulation (aDBS) delivers physiologically informed stimulation that can track fluctuations in PD motor symptoms, enabling more intelligent DBS control. However, most existing aDBS approaches are primarily algorithm- and software-driven, with limited efforts toward circuit realization, particularly low-power and implantable integrated circuits. This paper presents the Silicon Leaky Integrate-and-Fire Deep Brain Stimulation (SiLIF-DBS) controller, a neuromorphic silicon neuron stimulator implemented with metal-oxide-semiconductor (CMOS) technology. For system-level evaluation, a simplified computational model of the SiLIF-DBS controller is derived and embedded within a Parkinsonian cortico-basal ganglia framework for closed-loop validation. The system is driven by beta-band subthalamic nucleus local field potentials (STN-LFPs), with their average rectified value (Beta ARV) used as the control biomarker. Our SiLIF-DBS controller for aDBS suppresses pathological beta activity while consuming only 25% of the power required by open-loop stimulation and achieving a suppression efficiency of $5.85\%$/$μ$W. Overall, our SiLIF-DBS controller achieves strong beta suppression at substantially reduced power, delivering high suppression efficiency that demonstrates it is a viable foundation for low-power implantable aDBS.

Biometric templates are vulnerable to theft if stored without protection. Unlike passwords, a compromised iris cannot be reissued. Although existing cancelable biometric schemes address this problem, most still require an external key or token, introducing an additional attack surface. This paper proposes a cancelable contralateral iris template protection scheme that eliminates the need for a separate token or stored secret, satisfying the three requirements of ISO/IEC 24745: irreversibility, unlinkability, and confidentiality. The method fuses three enrollment samples per eye using Majority Vote Fusion to produce a stable template, and applies a salt-based bit permutation derived from the subject's enrollment ID. Combining the left- and right-permuted templates via a bitwise XOR produces a single Protected Fused Template. Since left and right iris patterns are statistically independent, fusing contralateral irises improves the accuracy of the system. An attacker must possess both iris codes and both salts to recover any useful information, yielding a larger effective key space than single-iris schemes. Experiments on three datasets, CASIA-IrisV4-Interval, CASIA-IrisV2 (two devices), and CASIA-Iris-Thousand, yield EERs of $0.36$%, $4.88$%, $10.80$%, and $3.35$%, respectively; the highest value reflects the more challenging cross-device scenario. These results demonstrate that our contralateral approach outperforms unprotected baselines while remaining competitive with state-of-the-art cancelable methods. %In addition, an ablation study confirms the benefit on both recognition performance and security. To the best of our knowledge, this is the first scheme to combine tokenless multi-instance fusion and contralateral binding under ISO/IEC 24745.

The human brain processes dynamic visual input through hierarchically organized, functionally specialized regions. While recent in silico brain encoding models can synthesize optimal stimuli to probe selectivity in different brain regions, prior work has been largely limited to static images, leaving dynamic visual processing underexplored. We introduce a novel neural-guided video synthesis framework that generates stimuli optimized for target brain regions across visual cortex. Our method performs evolutionary search over a structured prompt space, guided by a dynamic encoding model that predicts voxel-level responses to video inputs. By maximizing predicted activity for a target ROI, the framework efficiently discovers hyper-activating dynamic stimuli that consistently surpass handcrafted localizer videos. The synthesized videos recover known selectivities across ventral, dorsal, and lateral pathways, and further reveal systematic differences in sensitivity to temporal dynamics. A searchlight analysis provides new insight into the progression toward increasingly complex social-dynamic features along the lateral stream, further supported by probing with synthesized abstract, non-naturalistic stimuli. Taken together, our framework enables in silico exploration of dynamic visual selectivity, with new predictions for in vivo experiments

Linear-attention and state-space language models compress the prefix into a fixed-size recurrent state, yielding O(1) memory at the cost of a lossy exact memory: when many key--value associations compete, earlier facts are overwritten and needle recall degrades. Inspired by Complementary Learning Systems, we give linear attention a hippocampal complement. HOLA (Hippocampal Linear Attention) keeps the usual delta-rule state as a compressive memory and adds a bounded exact KV cache, forming a semiparametric test-time memory: the state models linearly compressible structure, while the cache stores associations that should not be forced through that state. The cache writes without a learned eviction module, keeping tokens with large beta * ||e||, the prediction residual actually committed to the state; a decoupled RMSNorm-gamma cache read then turns these exact KV pairs into sharp retrieval rather than soft averaging. At 340M parameters trained on 15B SlimPajama tokens, HOLA lowers Wikitext perplexity from 27.32 to 22.92 (-16.1%), below a full-attention Transformer++ (26.88), and improves LAMBADA perplexity from 30.95 to 30.26. It also achieves the best linear in-context retrieval and remains much more robust than GDN or a matched HOLA+recency cache on RULER needle-in-a-haystack recall out to 32k tokens (16x its training length).

Understanding how complex cognitive functions are organized within artificial systems is central to interpreting large language models (LLMs) and relating them to biological cognition. Yet although LLMs exhibit broad cognitive-like behaviours, it remains unclear whether their internal representations form reproducible functional systems that explain behaviour, failure and links to human cognition. Here we present NeuroCogMap, a cognitive neuroscience-inspired framework that organizes internal features of LLMs into functional parcels and links them to interpretable functions, cognitive capabilities and a cognitive hierarchy. These parcels form a stable and semantically coherent organization that is partly conserved across models and functionally linked to model outputs. Within this organization, major LLM failures, including hallucination, bias, refusal failure and sycophancy, correspond to distinct disruptions in representational and behavioural-control systems, yielding internal signatures for mechanism-guided detection and targeted intervention. Beyond model behaviour, NeuroCogMap improves prediction of human cortical responses during naturalistic language comprehension, with the strongest correspondence in higher-order association cortex. At the cognitive level, its internal signatures expose latent strategies that guide refinements of classical models of human decision-making. Together, these findings establish NeuroCogMap as a system-level framework for mapping functional organization in artificial systems and for relating this organization to human cortical function and cognitive behaviour.

In recent years, most research on multimodal salient object detection (SOD) and camouflaged object detection (COD) typically aims to improve performance through complex cross-modal feature fusion and decoding structures. However, this approach leads to an excessively large model parameter scale and often fails to deliver satisfactory detection performance due to structural redundancy. In contrast, the human visual process is able to efficiently perform salient and camouflaged object identification without such complex structures. This contrast raises an important question: Can we draw conceptual inspiration from the human visual process to achieve a simpler modeling strategy, and still realize accurate and efficient object detection? To answer this question, we propose HVPNet, a simple yet general bio-inspired computational architecture. Drawing on the multi-layered information integration of the retina as a conceptual metaphor, we designed a Retinal Integration Module (RIM), which effectively integrates multimodal features through a level-specific multi-stage integration strategy. To fully exploit these features, we further design a cortical decoder (CD) that breaks down the decoding process into low- and high-level visual stages, abstracting the hierarchical processing in the human visual cortex. Benefiting from these designs, HVPNet can readily extend to seven tasks across four modalities. Without bells and whistles, it establishes an excellent accuracy-efficiency trade-off across 22 datasets spanning these seven tasks. Our code is available at https://github.com/jiaweiXu1029/HVPNet.

Touch resolves the physical-property ambiguity left by vision: exploratory contact recovers shape, texture, compliance, and material, and visuo-haptic object representations converge in ventral visual cortex. We ask whether representation learning can reproduce this grounding. TacGen mitigates the tactile-data scarcity bottleneck by combining pre-specified V+T contrastive alignment with a latent-space residual-MLP V->T generator that synthesizes tactile latents from RGB for tactile-data scaling. With matched DINOv2 backbones, splits, and probes, V+T improves matched V-only on mass (Delta R^2=+0.570), density (Delta acc=+0.067), hardness (+0.117), and uncertainty-banded force labels (Delta R^2=+0.281); all CIs exclude zero. The same representation lifts matched-capacity TACTO manipulation 0.246->0.979 while V-only capacity scaling accounts for only 4.5% of the gap, preserving 95.5%. The generator reaches cross-seed +0.589, with real tactile +0.585 inside the seed interval; the architecture comparison shows a 13pp downstream gap between reconstruction quality and representation utility. Across five-seed SSVTP/TVL reproductions, YCB-Sight transfer, three-backbone checks, permutation/random-feature controls, hash-verified manifests, and measured-force validation checks, the evidence supports the claim that touch supplies a necessary physical evidence channel for representations of contact-dependent properties.

Test-time adaptation (TTA) of vision-language models (VLMs) is essential for their robust deployment in dynamic, real-world environments. However, existing TTA methods often adapt locally without accumulating knowledge over time, or operating within a single modality without exploiting VLMs' inherently multi-modal nature. Inspired by the \textbf{Com}plementary \textbf{Mem}ory systems of the biological brain, we propose \textbf{ComMem}, an innovative approach that mimics the distinct but cooperative roles of the hippocampus and neocortex to enable effective TTA for VLMs. ComMem consists of two key components: a fast-adapting detailed memory, akin to the hippocampus, that forms a dynamic visual cache from high-confidence test samples; and a slow-integrating abstract memory, akin to the neocortex, that continually refines global textual prototypes. For each test instance, ComMem jointly optimizes both memory systems to ensure cross-modal consistency. Extensive experiments on 15 benchmark datasets show that ComMem significantly outperforms state-of-the-art methods under both natural distribution shifts and cross-dataset generalization, offering a promising direction for enhancing VLMs' practical adaptability.

This paper addresses the lack of explicit memory mechanisms in current object detection models and proposes Hippocampus-DETR, a novel detection framework based on biological hippocampal memory modeling. This framework integrates a hippocampal memory network module, HipNet, into the DETR architecture and systematically simulates the anatomical structure and functional organization of hippocampal subregions, including the entorhinal cortex, dentate gyrus, CA3, CA1, and subiculum. Through this design, Hippocampus-DETR realizes pattern separation, pattern completion, importance filtering, and information integration of visual encoding features. During training, different memory submodules are optimized using a layer-wise training strategy, ultimately forming a memory system with memory retrieval and completion capabilities. Experimental results demonstrate that Hippocampus-DETR achieves higher detection accuracy than current mainstream models. More importantly, models equipped with this framework also exhibit excellent generalization ability and data efficiency in tasks such as few-shot image classification, multimodal feature construction, and image restoration. Subsequent experiments further validate the functional necessity and internal interpretability of each memory submodule. This study not only provides a novel object detection framework, but also offers a feasible technical pathway for integrating neurocognitive mechanisms with deep learning models, highlighting its significant value in improving model learning efficiency and task robustness. The project is available at https://github.com/2186cloud/hipnet.

Continuous attractor neural networks (CANNs) are the canonical computational framework for how the brain encodes continuous variables such as spatial position, head direction, and movement direction, and explain the activity of hippocampal place cells, entorhinal grid cells, and head-direction cells. CANN research, however, is fragmented: most results rest on lab-specific implementations, general-purpose simulators lack CANN-specific abstractions, and the path from spike trains to attractor geometry in real recordings lacks a standardized toolkit. Here, we present a comprehensive open-source toolkit that unifies the full CANN research workflow. It combines three tightly integrated components: 1) canns, a Python library on BrainPy/JAX that provides standardized 1D/2D CANNs, spike-frequency-adaptation variants, grid cell networks, hierarchical path-integration models, and brain-inspired attractor architectures, together with curated datasets, task generators, an analyzer module and trainer modules for biologically plausible plasticity; 2) canns-lib, a Rust acceleration backend delivering hundreds-of-times speedups for spatial-navigation workloads and modest gains for Ripser-based persistent homology; 3) ASA (Attractor Structure Analyzer), a PySide6 pipeline applying persistent homology and cohomology to experimental neural recordings to detect ring-like and toroidal attractor signatures in real data. The toolkit ships with full-detail reproducible pipelines that recover recent CANN results including SFA-driven anticipative tracking, theta sweeps in head-direction/place/grid systems, and hierarchical path integration.

The structure of human visual representations underpins our capacity for adaptive behaviour. While pretrained neural networks model human visual representations with unprecedented success, a large discrepancy remains. We propose one reason: these networks optimise a single fixed objective, whereas human representations must support open-ended tasks. We hypothesise this flexibility arises from meta-learning (learning to learn), a pressure shaping representations to acquire new tasks from few observations. To test this, we train a sequence model, without any supervision from human data, across thousands of semantically rich tasks mapping images to high-level concepts. Compared to their pretrained base encoders, meta-learned representations better predict human similarity judgements, semantic rule learning, and high-level visual cortex. Behavioural gains depend on disentangled, high-level task distributions, while brain alignment is driven primarily by the learning-to-learn pressure. Our results suggest the flexibility of human visual representations reflects the functional demand to learn new semantic relationships on the fly.

A defining feature of human intelligence is the ability to adapt to changing environments by inferring latent task structure from sparse observations. Neuroscientific research indicates that this capability relies on the hippocampus constructing abstract representations, expressed as low-dimensional, approximately orthogonal manifolds in neural state space. However, the internal mechanisms of large language models (LLMs) remain largely opaque, making it unclear whether they form comparable abstract representations or instead rely on task-specific statistical regularities when performing comparable reasoning tasks. Here we adapt a contextual reversal-learning paradigm to a text-based setting and compare humans and LLMs at both the Behavioural and representational levels. We report that although LLMs exhibit generalizable reasoning less frequently than humans, when such inference occurs, their internal states exhibit abstract geometric structures that resemble those reported in the hippocampus. Notably, this representational geometry is not uniformly distributed but is organized hierarchically across model depth: whereas lower layers show early, stable encoding of stimulus identity, higher layers form a hippocampal-like functional band enriched for abstract context geometry associated with inference. Furthermore, complementary intervention experiments mechanistically implicate geometry in reasoning: task-sequence language modelling induces geometric disentanglement, whereas geometric regularization of higher layers increases the emergence of generalizable inference. Together, these findings establish abstract representational geometry as a mechanistic principle supporting inference in large language models.

Accurate segmentation of subcortical regions is critical for neurosurgical planning and functional research. Most automated methods rely on template space coregistration, which may compromise patient-specific accuracy, particularly in small structures. We identify a need to evaluate whether native space approaches offer a measurable advantage, which we evaluate in the context of movement disorders. We developed two UNet-based segmentation pipelines of the Subthalamic Nucleus (STN) - a common surgical target in Parkinson's Disease - and the neighbouring Red Nucleus (RN) and Substantia Nigra (SN). We collected 7T and 3T MRI data from five public datasets. The pipelines were evaluated in the native-space against manual labels. We further investigated the effect of the template resolution. Motivated by the hypothesis that models may better learn target boundaries in higher field, we tested the transferability of 7T-trained models to 3T clinical images, and whether synthetic 3T training data - generated via a disentangled representation learning method - could help bridging this domain gap. On held-out 7T data, the native pipeline consistently outperformed the template one. For the STN, native-space Dice reached 0.775 +- 0.055 versus 0.713 +- 0.051 (1 mm template), with HD95 of 0.79 +- 0.24 mm versus 1.17 +- 1.10 mm, respectively. Similar advantages were observed for the RN and SN. Increasing template resolution did not improve accuracy. When applied to 3T images, all models showed a considerable performance drop. Adding synthetic 3T data yielded only modest improvements, though without degrading 7T performance. Native-space segmentation is preferable for applications requiring patient specific anatomical fidelity, such as the surgical planning in PD. Bridging the 7T-to-3T domain gap remains an open challenge, motivating future work on domain adaptation tailored to subcortical structures.

Vision-Language Models (VLMs) for embodied navigation rely on selecting a fixed number of frames from a growing trajectory history. As episodes extend, this selection grows increasingly sparse, yet prior work shows no accuracy gain when scaling from 8 to 64 frames, suggesting the bottleneck is not frame quantity but the representation itself. Sparse frame selection cannot capture the structured behavioral signal that long-horizon reasoning requires: turning patterns, cumulative displacement, and path topology. We introduce BIT-Nav (Brain-Inspired Trajectory Memory for Navigation), a framework that augments frozen VLM navigation pipelines with a compact learned trajectory memory. Motivated by hippocampal path integration, where spatial experience is compressed into structured episodic traces rather than stored as raw sensory replay, BIT-Nav trains a Bi-GRU encoder over action and relative pose sequences via a multi-positive InfoNCE contrastive objective on trajectory prefixes sharing the same behavioral intent. The resulting embedding is projected into the VLM token space via a lightweight MLP and injected as a single memory token at each decision step, conditioning the model on structured motion history at constant token cost regardless of episode length

Visual perception depends on top-down goals and bottom-up sensory mechanisms. Vision-language models implement both, allowing us to treat each component as a separable hypothesis about what drives where we look. We compared spatial attention maps from six vision-language models against human fixation heatmaps recorded on 200 images during two tasks (general description and social captioning). The six models spanned a 2$\times$2 factorial of CNN vs.\ ViT encoders crossed with LSTM vs.\ Transformer decoders, plus Molmo 7B-D and Qwen3.5 9B. We found that both decoder and encoder architecture shaped alignment, but decoder choice dominated. LSTM vs.\ Transformer decoders increased alignment by 40--50 percentage points (80--87% vs.\ 40--59% of the human noise ceiling). In contrast, CNN vs.\ ViT encoders contributed a secondary 5--20 point advantage depending on decoder family, with CNN-LSTM the most aligned model overall (85--87%). Despite their alignment advantage, LSTM-decoder attention maps were spatially diffuse and minimally task-differentiated; ViT-Transformer, the weakest in alignment, showed the sharpest spatial concentration and strongest task differentiation. A hemispatial-neglect simulation confirmed that ablating attention impacted LSTM decoders more than Transformer decoders. In an exploratory extension using TRIBE-simulated synthetic neural responses, fixation alignment and neural relevance dissociate: CNN-Transformer attention maps better predicted synthetic brain activity despite lower fixation alignment, with attention maps best predicting early visual cortex. Together, top-down and bottom-up components trade off what they predict in behavioral and synthetic neural data.

How the wiring and functional organization of cortex shape recurrent computation remains a central question in both neuroscience and machine learning. Here, we leverage data released through the Machine Intelligence from Cortical Networks (MICrONS) program--a functional connectomics resource spanning multiple areas of mouse visual cortex, in which dense calcium imaging is co-registered with high-resolution electron microscopy reconstruction from the same animal--to build biologically grounded recurrent neural networks. Using neuronal spatial coordinates, anatomical connectivity, and function-derived relationships from nearly 12,000 coregistered excitatory neurons, we initialize recurrent weights and impose communication-aware spatial constraints during learning. Across three cognitive decision-making tasks, networks constrained by cortical structure and function consistently outperform baseline and partially constrained models. Functional weight initialization provides the largest gain, while real spatial embedding yields robust additional improvements across conditions. These biologically grounded networks also develop low-entropy, modular, and small-world organization, and retain strong performance even when recurrence is restricted to positive weights. Together, our results show that the machinery of cortex--its geometry, wiring, and functional structure--can be harnessed as a powerful inductive basis for building recurrent networks that learn more effectively while converging toward key organizational principles of biological computation.

Despite significant advancements in point cloud analysis, reducing energy consumption and improving robustness remain understudied, largely due to the inherent limitations of Convolutional Neural Networks (CNNs). To address this issue, we draw inspiration from the primary visual cortex and propose a Dendritic-Connected Continuous-Coupled Neural Network (DC-CCNN), a novel Brain-Inspired Neural Network (BINN) architecture for point cloud analysis. By combining discrete and continuous encoding, our design replaces traditional Multilayer Perceptrons (MLPs) with more efficient and robust BINNs. Building upon this framework, we further propose an extended model, DC-CCNN++, to improve robustness under complex corruption conditions. Specifically, we introduce a Neuro-Inspired Robust Modulation-and-Readout Module (NRMR) to enhance feature stability and decision robustness through global-context gain modulation and dual-code evidence integration. We also design a Cortically Inspired Progressive Variability Training (CPVT) strategy, which progressively exposes the model to structured environmental variability while preserving stable clean-sample anchors during training. Experimental results show that DC-CCNN++ improves the performance of brain-inspired networks on point cloud analysis while maintaining performance comparable to state-of-the-art methods. Compared with the original DC-CCNN, it achieves stronger results on both classification and part segmentation, and exhibits enhanced robustness against sparsity, occlusion, Gaussian noise, salt-and-pepper noise, and spatial transformations. With its efficiency, robustness, and biologically grounded design, DC-CCNN++ provides a promising alternative to traditional deep learning methods for point cloud analysis. Code is available at https://anonymous.4open.science/r/DC-CCNNpp-44E3.

Neural population geometry shapes downstream computation. Recent empirical findings in neurobiology suggest that a hyperbolic structure underlies population activity in the hippocampus. Here we provide a theoretical framework for this phenomenon. First, we propose a plausible construction of hippocampal tuning curves that statistically induces hyperbolic geometry. Next, we establish a connection between neural decoding and associative memory by demonstrating that the Modern Hopfield Network update rule computes the minimum mean-squared-error (MMSE) estimator. Finally, we introduce a novel associative memory model defined in hyperbolic space that yields significantly larger capacity than leading models. Our results suggest that animals encode spatial information as a latent hyperbolic cognitive map, improving both memory capacity and decoding accuracy.

Nearby neurons in cortex share similar response profiles, producing systematic spatial organization across sensory and cognitive systems. Recent topographic models reproduce aspects of this structure but remain unimodal and spatially constrain each layer separately, yielding fragmented maps that capture neither the contiguity of cortical processing streams nor their integration across modalities. We introduce Topo-Omni, a topographic multimodal model in which visual, auditory, and language/cognitive processing share a single contiguous in-silico sheet. Built by fine-tuning a pretrained foundation model with a spatial smoothness objective, this architecture develops clusters across modalities that are consistent with human neuroimaging, from sensory to cognitive systems. Driving or suppressing a cluster selectively biases or impairs perception, paralleling human intervention studies. Finally, we use our model to screen for novel clusters in-silico and discover new natural landscape and animal networks which we validate in human data. A single spatial principle thus organizes representations across modalities and processing stages, yielding testable hypotheses about cortical organization.

Cortical folding reflects coordinated neurodevelopmental processes and is increasingly recognized as a sensitive marker of neurological disease. However, most existing analyses rely on indirect scalar summaries that do not explicitly model folding geometry itself. In juvenile myoclonic epilepsy (JME), a common genetic epilepsy, cortical abnormalities are often subtle, spatially distributed, and difficult to detect using conventional morphometric measures. We introduce a Poisson-equation--based framework that models cortical folding as a geometry-driven flow derived from mean curvature on the cortical manifold. By treating folding patterns as a stationary source--sink structure, the proposed approach yields a smooth, globally balanced potential field whose surface gradient defines a physically interpretable flux. This framework enables spatially coherent analysis of sulcal--gyral folding organization and provides a principled representation of geometry-driven cortical structure in JME.

Large Language Models (LLMs) have demonstrated remarkable capabilities across various tasks, raising expectations for Artificial General Intelligence (AGI). This position paper argues that integrating explicit memory is the cornerstone for advancing LLMs toward AGI. The key reason is that the underlying learning mechanism of LLMs is highly analogous to human implicit memory. However, higher-order cognitive functions necessary for AGI, such as long-term strategic planning, metacognition, and symbolic reasoning, heavily rely on hippocampal explicit memory and cannot arise solely from implicit statistical learning. Drawing on findings from neuroscience, I advance this perspective and complement it with computational requirements for artificial explicit memory systems, hoping to foster further research and lay the groundwork for explicit memory integration.

Recursion enables the generation of hierarchical linguistic structures but imposes substantial processing demands during real-time comprehension. While difficulties with complex syntax have been reported in autism spectrum disorder (ASD), the temporal dynamics of recursive processing remain poorly understood. This study used event-related potentials (ERPs) to examine how Mandarin-speaking children with ASD process two-level recursive locative constructions. Twenty-four children (12 ASD, 12 typically developing, TD) participated in a cross-modal sentence-picture matching task. Neural responses were analyzed across three processing stages associated with structural prediction (P200), semantic integration (N400), and syntactic reanalysis (P600), with mental age controlled. Results revealed a systematic divergence between groups. TD children showed clear P200 and P600 modulation in response to structural mismatch, whereas ASD children exhibited attenuated early differentiation and reduced late reanalysis effects. In contrast, ASD children showed enhanced N400 responses under mismatch conditions, indicating increased semantic integration demands. In addition, the ASD group displayed significantly greater inter-individual variability in hemispheric lateralization, although lateralization strength was not associated with receptive vocabulary performance. These findings support a cascading account in which reduced early predictive engagement in ASD leads to increased integration costs and diminished reanalysis efficiency during recursive processing. More broadly, the results highlight the importance of both temporal processing dynamics and neural variability in understanding language differences in ASD.

Understanding the relationship between deep visual representations and the human visual system is a fundamental challenge in computational neuroscience. While modern vision models achieve strong performance in image recognition, their correspondence with the hierarchical organization of the human visual cortex remains an open question. In this study, we propose CHASMBrain, a novel hierarchical two-stage framework for image-to-fMRI encoding. Our architecture leverages a dual-stream Mamba design to explicitly separate and process global semantic tokens and local spatial patches, motivated by the functional organization of the visual cortex. A coarse-to-fine strategy is employed: Stage 1 predicts denoised ROI-level activations, while Stage 2 refines these coarse responses into full voxel-level predictions using a Mamba-VAE. Experiments on the Natural Scenes Dataset (NSD) demonstrate that our method achieves a Pearson correlation of 0.429 and an MSE of 0.261, outperforming all evaluated baselines including ridge regression and DINOv2 linear probes. Beyond predictive performance, causal branch-ablation experiments reveal an asymmetric specialization: the patch stream is specifically locked to early visual cortex (retinotopic regions), while the CLS stream contributes broader semantic context to higher-order areas -- a correspondence that holds causally, not merely correlationally. Cross-subject transfer experiments further show that the learned backbone generalizes across individuals with minimal per-subject adaptation, suggesting the model captures a shared, subject-agnostic visual representation.

The prefrontal cortex (PFC) maintains goal information for action planning, but how recurrent circuits preserve it in an action-usable form over behavioral timescales remains unclear. Here we ask whether short-term synaptic plasticity (STP) can stabilize goal information as action-usable, goal-conditioned dynamics. We incorporated STP into a PFC-inspired reservoir computing model with basal-ganglia-inspired temporal-difference readout learning, and evaluated paired models with and without STP across 100 independently generated networks in a multistep goal-directed action-selection task with delayed execution. Goal identity was highly decodable during the delay even without STP, so STP was not required to form a linearly readable goal representation. Under state noise, however, success without STP fell from 75.8% to 49.5%, whereas the model with STP remained essentially unchanged (91.8% without noise versus 89.2% under noise; paired Cohen's dz=1.31). Time-resolved decoding, state-space separability, and action-value-difference analyses showed that STP preserved goal information as action-relevant goal-conditioned dynamics available at later action opportunities. Gain-matched and STP-state perturbation controls argued against a simple fixed recurrent-scaling explanation and supported online, history-dependent synaptic modulation. Effective-connectivity analyses showed delay-period goal-specific patterning that increased toward the later part of the trial with STP, where it should be read as goal- and task-state-conditioned patterning; effective connectivity without STP was time-invariant. A grid search identified a facilitation-dominant range of STP time constants associated with high success rates. These results suggest that STP supports robust goal-conditioned dynamics through dynamic modulation of goal-dependent effective recurrent connectivity.

It has been proposed that the brain integrates flexible, computationally expensive cortical processing with simpler, lower-cost subcortical mechanisms to achieve resource-efficient performance greater than that of either system alone. Despite the allure of this perspective, satisfying theoretical frameworks that explore this hypothesis are still limited. We extend existing frameworks in which a model-based module and model-free module learn in tandem by explicitly constraining the memory resources of the model-based module, and investigate the impact of this constraint in a simple decision-making setting. Memory constraints naturally give rise to strategies for allocating memory resources. We evaluate the performance of different strategies in different situations and demonstrate that when the rewarded states change often, it can be advantageous for the model-based module to focus its memory resources not on exploiting the current reward, but on capturing general structure of the environment. This work provides a theoretical foundation for a functional dissociation between cortical and subcortical systems during learning: the cortex supports general structure learning, while subcortical circuits specialize in reward-based learning. We further detail how these hypotheses can be tested on experimental data.

Random, untrained neural networks consistently match or exceed trained networks in representational similarity to early visual cortex. This puzzling finding challenges the assumption that learning improves brain alignment. We investigate it by tracking representational similarity analysis (RSA) alignment to human fMRI data across training for four learning rules: backpropagation (BP), feedback alignment (FA), predictive coding (PC), and spike-timing-dependent plasticity (STDP). Using 720 object images from the THINGS database and fMRI data from three subjects across six visual ROIs, we measure Spearman correlations between model and brain representational dissimilarity matrices at eight training checkpoints (epochs 0-40). We find that (1) a single epoch of training reduces V1 alignment by 25-90%, depending on the learning rule; (2) backpropagation reduces V1 alignment most severely (delta r = -0.080), while predictive coding and STDP preserve substantially more (delta r ~ -0.04); and (3) a weaker, opposite tendency appears in object-selective cortex (LOC), where BP shows the largest increase in alignment during training, although the absolute change is small. These results suggest that untrained architectures capture low-level visual statistics through inductive biases alone, and that global error signals (BP) reshape early representations more aggressively than local learning rules (PC, STDP), which better preserve brain-like structure.

Understanding how cortical activity represents natural whole-body behaviors in primates remains challenging. Limited by the diversity of movements and inaccessibility of large-scale neural representation of whole-body kinematics, previous motor decoding studies focused on constrained tasks and limited limb movements. Here, we present a neural-behavioral recording and modeling framework for freely moving monkeys, combining large-scale epidural cortical signals from distributed sensory- and motor-related areas with synchronized multi-view motion capture through a custom-made data collection platform. We reconstructed whole-body monkey kinematics and learned a compact behavior prior using an autoregressive encoder-decoder model. Conditioned on neural signals, the model decoded accurate and realistic whole-body movement without explicit physical constraints. Our results provide a novel proof-of-concept approach for decoding natural whole-body movements in primates using large-scale intracranial neural activity.

Backpropagation is the core learning mechanism underlying deep learning. However, whether and how this algorithm is implemented in the brain remains highly debated. In particular, while forward activations of pretrained models reliably map onto the cortical hierarchy of visual processing, it is unknown whether backpropagated gradients exhibit a similar correspondence. Here, we address this question using functional magnetic resonance imaging (fMRI) and magnetoencephalography (MEG) recordings of human brain responses to natural images. For this, we extend standard encoding analyses of forward activations to map backpropagated gradients onto neural data. Focusing on a recent self-supervised vision model (DINOv3) and reproducing results on eight vision models, we find that backpropagated gradients can reliably predict both fMRI and MEG signals, specifically in higher-level visual cortex and for later latencies. However, the spatial and temporal organization of these backpropagated gradients in the brain diverges from the patterns expected under a biologically plausible backpropagation mechanism: specifically, both the order in which gradients are computed and their spatial organization diverge from the temporal and spatial hierarchies of the human brain. Together, these results suggest that, although deep networks and the brain may share similar representational content, they likely rely on fundamentally different mechanisms to learn those representations.

Predicting conversion from Mild Cognitive Impairment (MCI) to Alzheimer's Disease (AD) is critical for early intervention. Current deep learning paradigms predominantly rely on cross-sectional structural MRI, neglecting prognostic value in patient-specific anatomical trajectories. We introduce the Temporal Adaptive Fusion Network (TAF-Net), a hybrid CNN-Transformer architecture that models paired longitudinal 3D MRI scans. Central to TAF-Net is a Temporal Fusion Module governed by an Adaptive Temporal Gate, which learns patient-specific weightings to synthesize three spatiotemporal representations: explicit structural change, region-to-region temporal cross-attention, and bilateral feature concatenation. Evaluated on the Alzheimer's Disease Neuroimaging Initiative cohort for three-year MCI-to-AD conversion prediction, TAF-Net achieved the highest discriminative performance among all evaluated methods using only structural MRI, significantly outperforming the strongest baseline and approaching multimodal methods requiring PET, CSF, or genetic data. The architecture exhibited exceptional data efficiency, matching baseline performance with a fraction of training data. Ablation studies demonstrate that longitudinal fusion improves discrimination while reducing predictive variance by 48% compared to single-timepoint evaluation. Interpretability analyses reveal spatial attention aligned with established AD pathology in the medial temporal lobe and ventricles, while the gating mechanism prioritizes explicit volumetric change with strong positive correlation to conversion risk.

Confirming Alzheimer's disease (AD) typically relies on positron emission tomography (PET), which remains costly and invasive, motivating the use of structural MRI-based prescreening. Deep learning on non-Euclidean manifolds, particularly brain cortical surfaces, faces significant challenges due to the data's spherical topology. Recent surface models have enabled learning from cortical surface data; however, imposing face-based uniform patches often causes duplicate vertices at patch boundaries. In general, many surface-based models are limited in their awareness of the region of interest (ROI), which can result in non-cortical regions, such as the medial wall, being included. We propose a cortical surface tokenization that performs ROI-preserving, vertex-based, variable-sized patch partitioning. We refer to these cortical surface patches as cortical supervertices (CSVs). Building on this representation, we design the CSV Vision Transformer (CSV-ViT), a variable-size patch-tolerant Vision Transformer that uses padding and a mask-aware patch embedding. We used T1-weighted MRI and evaluated our framework by classifying AD-related status into three categories: AD diagnosis, amyloid positivity, and tau positivity. Across the experiments, CSV-ViT achieved higher classification performance than recent surface-based models. The results suggest that the proposed CSV-ViT may support MRI-based prediction of AD-related status prior to PET or CSF confirmation.

Current fMRI decoders face a performance-fidelity trade-off where efficient ID encoders outperform geometrically faithful surface-based models. We argue this is partly driven by inefficient surface tokenization and the failure to use anatomy as a predictive signal. We present NeurIPS, a framework that improves surface-based decoding by reframing anatomical variation from a nuisance to a powerful inductive prior. NeurIPS unites two innovations: a Selective ROI Spherical Tokenizer (SRST) for efficient geometric encoding, and a Structure-Guided Mixture of Experts (SG-MoE) that explicitly models individual anatomy using cortical features. On the Natural Scenes Dataset, NeurIPS establishes a new state-of-the-art for surface decoders and achieves performance comparable to strong 1D baselines. This is achieved with unprecedented efficiency, as the model converges dramatically faster (10 vs. 600 epochs). This efficiency enables rapid adaptation to new subjects using only 20% of data and ensures robust scalability as the training cohort is expanded. Ablations provide causal evidence that these gains are driven by the model's use of cortical features, not by memorizing subject IDs. By leveraging anatomical priors, NeurIPS provides a principled and scalable path toward robust, generalizable brain decoding.

Intermediate layers of large language models (LLMs) best predict human brain responses to language, one of the most robust findings in computational neurolinguistics, yet why remains mechanistically unexplained. We address this gap by bridging sparse autoencoders (SAEs) from mechanistic interpretability with neural encoding models, decomposing GPT-2 XL and Llama-3.1-8B into 16K-32K interpretable features per layer. A human-validated taxonomy ($κ\geq 0.74$) reveals that semantic features alone recover 94% of peak encoding performance ($r=0.285$), substantially exceeding variance-matched baselines ($p<0.001$, $d=1.31$). Beyond this aggregate dominance, we test a novel cortical topography prediction: five semantic subcategories derived a priori from three independent neuroscience programs should map onto distinct brain regions. A formal convergence test confirms this alignment (Spearman $ρ=0.72$, $p<0.001$; hypergeometric $p=0.007$), demonstrating that SAE-discovered features recapitulate known cortical semantic organization at a granularity inaccessible to prior methods. SAE features further predict human reading times beyond lexical controls ($Δ\mathrm{logLik}=38.4$, $p<0.001$), and an exploratory prediction-error analysis provides preliminary evidence that the brain additionally encodes unexpected semantic content. Results generalize across English, Chinese, and French.

Brain-LLM alignment is well established in English, yet the brain's language network is neuroanatomically universal across languages. Does alignment also generalize cross-linguistically, and what governs the variation? We test this using fMRI data from 112 participants across English, Chinese, and French (the Le Petit Prince corpus) and seven LLMs spanning English-dominant, Chinese-dominant, and multilingual architectures. Our central finding is that training-language dominance, not an inherent property of English, drives the alignment pattern: a Chinese-dominant model (Baichuan2-7B), architecture-matched to LLaMA-2-7B, reverses the gradient entirely, aligning best with Chinese brains and worst with English. Beyond training dominance, formal typological distance independently covaries with alignment degradation, syntax-associated brain regions (IFG) show $2.3\times$ steeper typological gradients than lexico-semantic regions (PTL), and tokenization fertility accounts for $\sim$60% of a cross-linguistic shift in optimal encoding layer. These results reveal that the apparent "English advantage" in brain-LLM alignment is an artifact of training data composition, while the remaining variation reflects genuine typological structure concentrated in syntactic processing.

Winner-take-all (WTA) networks constitute a central circuit motif in cortical networks of the brain. In addition, WTA-like activations are abundant in modern deep learning models in the form of the softmax activation for example in attention layers of transformers. While their role in the extraction of latent factors has been studied for relatively simple generative models, their role in the context of highly non-linearly entangled latent factors has remained elusive. In this article, we show that a WTA bottleneck within a deep neural network can enforce under certain well-defined conditions the extraction of categorical latent factors of the data in a multi-task learning setup. In particular, we prove that the representation that emerges in the WTA bottleneck is highly symbolic, where a single neuron or a population of neurons encodes the presence of a single abstract feature such as a specific object, color, or position. We furthermore show empirically on two datasets, that this also holds for architectures and setups that do not fully comply with the assumptions of our theorem and demonstrate the advantages of the acquired symbolic representation for generalization. Our proposed model provides insights into the generalization capabilities of deep neural networks with WTA-like components and may serve as an interface between symbolic and subsymbolic AI systems.

Does the relationship between learning rules and brain alignment generalize across species? We extend our prior finding that untrained CNNs match backpropagation at human V1 by testing the same five learning rules against macaque electrophysiology. The rules are backpropagation (BP), feedback alignment (FA), predictive coding (PC), spike-timing-dependent plasticity (STDP), and an untrained random-weights baseline. The macaque data come from two datasets: MajajHong2015 (V4/IT, 3,200 stimulus presentations, 88/168 neurons) and FreemanZiemba2013 (V1/V2, 135 stimuli, 102/103 neurons). Using RSA with identical model weights from our human study, we find: (1) all models achieve higher alignment with macaque early visual cortex (rho = 0.15-0.30 at V1/V2) than with human fMRI (rho = 0.01-0.08), consistent with the higher signal-to-noise ratio of electrophysiology; (2) STDP and PC produce the highest macaque V1/V2 alignment (rho ~ 0.30 and 0.28), consistent with their leading position among trained rules in human V1; (3) at IT, learning rule rankings show no detectable correlation across species (Kendall's tau = 0.00, p = 1.00), though this null result is expected given that n = 5 provides power only at tau = +/-1.0, and is further confounded by stimulus set differences; (4) a pretrained ResNet-50 (ImageNet) achieves rho = 0.25 at macaque IT, substantially above all custom CNN conditions (rho = 0.07-0.14), suggesting IT alignment is limited by model capacity and training data rather than by the learning rule. Noise ceilings, multi-seed variability (5 seeds), and a stimulus-control analysis are reported. These results demonstrate that early visual alignment is robust across species, while higher-area alignment is modulated by model capacity and stimulus domain.