Deep Learning

Multi-antenna receiving systems have become a prevalent technical solution in communication systems. Meanwhile, deep learning has achieved significant progress in automatic modulation recognition tasks in single-antenna systems. However, the application of deep learning in multi-antenna modulation recognition (MAMR) tasks is still limited. In this paper, we propose an MAMR method namely MAMR-IQ to fully explore the diversity gain of a multi-antenna receiving system, which concatenates the raw received in-phase and quadrature (IQ) signals of multiple antennas and feeds them into a convolutional neural network. Simulation results show that the proposed MAMR-IQ method outperforms two existing deep learning-based MAMR methods which are based on direct voting (DV) and weight average (WA) in terms of both recognition accuracy and computational complexity. To address the problem of limited training data in few-shot scenarios, we further propose a data augmentation method that involves exchanging IQ sequences received by any two antennas to generate augmented samples. Simulation results show that with the proposed augmentation method, the recognition accuracy can be further improved.

Deep learning models are the most efficient models in many machine learning tasks. The main disadvantage when using them in IoT, mobile devices, independent autonomous or real-time systems is their complexity and memory size. Therefore, much research has concentrated on compression techniques of deep learning architectures. One of the most popular technique is quantization. In most of the works, the quantization is done based on the nearest neighbour quantization technique. This work focuses on improving the quantization efficiency in pretrained and quantized models. This approach has the potential to improve the final accuracy of quantized models. The main postulate of the work is that final quantization states of the network based on nearest neighbour rounding does not guarantee optimal accuracy. In the presented work, the evolution strategy is used as an optimization approach. The evolution in each iteration changes the values of the small percentage of weights. It shifts theirs values to different quantization states. The work shows that proposed evolution with an appropriate set of operators and parameters can fast improve the accuracy of the quantized models. The results are presented for popular architectures such as VGG and Resnet for image classification and detection. Additionally, simulations were carried out for the autoencoder architecture.

Pre-training is a general method that is used in a range of deep learning tasks. By first training a model on one task, and then further training on the downstream task used for final evaluation, the model is forced to learn a more general understanding of the input data. While pre-training has been applied to 3D Human Pose Estimation (HPE) previously, the scope of datasets used is typically very limited to some strong benchmarks, like Human3.6M. Therefore, in this project, we expand the scope of an existing 3D HPE scheme to be compatible with additional 2D and 3D HPE datasets, like Occlusion Person. We perform an extensive study on how aspects of 2D pre-training, such as model size, affect downstream performance, and to what extent pre-training can help the model generalize to different datasets. Experimental results show that 2D pre-training consistently outperforms training on 3D data alone, particularly in terms of computational efficiency. Finally, using MPII and Human3.6M, we are able to obtain an MPJPE score of under 64.5mm.

Being one of the oldest and most basic problems in image processing, image denoising has seen a resurgence spurred by rapid advances in deep learning. Yet, most modern denoising architectures make limited use of the technical knowledge acquired researching the classical denoisers that came before the mainstream use of neural networks, instead relying on depth and large parameter counts. This poses a challenge not only for understanding the properties of such networks, but also for deploying them on real devices which may present resource constraints and diverse noise profiles. Tackling both issues, we propose an architecture dedicated to RAW-to-RAW denoising that incorporates the interpretable structure of classical self-similarity-based denoisers into a fully learnable neural network. Our design centers on a novel nonlocal block that parallels the established pipeline of neighbor matching, collaborative filtering and aggregation popularized by nonlocal patch-based methods, operating on learned multiscale feature representations. This built-in nonlocality efficiently expands the receptive field, sufficing a single block per scale with a moderate number of neighbors to obtain high-quality results. Training the network on a curated dataset with clean real RAW data and modeled synthetic noise while conditioning it on a noise level map yields a sensor-agnostic denoiser that generalizes effectively to unseen devices. Both quantitative and visual results on benchmarks and in-the-wild photographs position our method as a practical and interpretable solution for real-world RAW denoising, achieving results competitive with state-of-the-art convolutional and transformer-based denoisers while using significantly fewer parameters. The code is available at https://github.com/MIA-UIB/nonlocal-matchfilter .

Soft-tissue deformation remains a major limitation in image-guided neurosurgery, where intra-operative anatomy can deviate substantially from pre-operative imaging due to brain shift, compromising navigation accuracy and surgical safety. Existing compensation methods often rely on intra-operative MRI, CT, or ultrasound, which are disruptive and difficult to integrate repeatedly into the surgical workflow. In contrast, partial 3D cortical surfaces can be reconstructed as point clouds from stereoscopic microscopes or laser range scanners (LRS), capturing only a limited portion of the exposed cortex. This makes point cloud registration a practical alternative without interrupting surgery; however, such partial and noisy observations make deformation estimation highly challenging. In this study, we propose a deep learning-based framework for non-rigid volume-to-surface registration, enabling dense displacement field estimation from sparse intra-operative surface observations without explicit point correspondences or volumetric intra-operative imaging. The network leverages multi-scale point-based feature extraction and a hierarchical deformation decoder to capture both global and local deformations. The key contribution lies in integrating partial intra-operative surface information into the full pre-operative point cloud domain, enabling implicit correspondence learning and dense deformation recovery under limited visibility. Quantitative results demonstrate accurate recovery of fine-scale deformations, achieving an Endpoint Error (EPE) of 1.13 +/- 0.75 mm and RMSE of 1.33 +/- 0.81 mm under challenging partial-surface conditions. The proposed approach supports automatic, workflow-compatible brain-shift compensation from sparse surface observations.

Existing multi-hazard susceptibility mapping (MHSM) studies often rely on spatially uniform models, treat hazards independently, and provide limited representation of cross-hazard dependence and uncertainty. To address these limitations, this study proposes a deep learning (DL) workflow for joint flood-landslide multi-hazard susceptibility mapping (FL-MHSM) that combines two-level spatial partitioning, probabilistic Early Fusion (EF), a tree-based Late Fusion (LF) baseline, and a soft-gating Mixture of Experts (MoE) model, with MoE serving as final predictive model. The proposed design preserves spatial heterogeneity through zonal partitions and enables data-parallel large-area prediction using overlapping lattice grids. In Kerala, EF remained competitive with LF, improving flood recall from 0.816 to 0.840 and reducing Brier score from 0.092 to 0.086, while MoE provided strongest performance for flood susceptibility, achieving an AUC-ROC of 0.905, recall of 0.930, and F1-score of 0.722. In Nepal, EF similarly improved flood recall from 0.820 to 0.858 and reduced Brier score from 0.057 to 0.049 relative to LF, while MoE outperformed both EF and LF for landslide susceptibility, achieving an AUC-ROC of 0.914, recall of 0.901, and F1-score of 0.559. GeoDetector analysis of MoE outputs further showed that dominant factors varied more across zones in Kerala, where susceptibility was shaped by different combinations of topographic, land-cover, and drainage-related controls, while Nepal showed a more consistent influence of topographic and glacier-related factors across zones. These findings show that EF and LF provide complementary predictive behavior, and that their spatially adaptive integration through MoE yields robust overall predictive performance for FL-MHSM while supporting interpretable characterization of multi-hazard susceptibility in spatially heterogeneous landscapes.

Academic integrity continues to face the persistent challenge of examination cheating. Traditional invigilation relies on human observation, which is inefficient, costly, and prone to errors at scale. Although some existing AI-powered monitoring systems have been deployed and trusted, many lack transparency or require multi-layered architectures to achieve the desired performance. To overcome these challenges, we propose an improvement over a simple two-stage framework for exam cheating detection that integrates object detection and behavioral analysis using well-known technologies. First, the state-of-the-art YOLOv8n model is used to localize students in exam-room images. Each detected region is cropped and preprocessed, then classified by a fine-tuned RexNet-150 model as either normal or cheating behavior. The system is trained on a dataset compiled from 10 independent sources with a total of 273,897 samples, achieving 0.95 accuracy, 0.94 recall, 0.96 precision, and 0.95 F1-score - a 13% increase over a baseline accuracy of 0.82 in video-based cheating detection. In addition, with an average inference time of 13.9 ms per sample, the proposed approach demonstrates robustness and scalability for deployment in large-scale environments. Beyond the technical contribution, the AI-assisted monitoring system also addresses ethical concerns by ensuring that final outcomes are delivered privately to individual students after the examination, for example, via personal email. This prevents public exposure or shaming and offers students an opportunity to reflect on their behavior. For further improvement, it is possible to incorporate additional factors, such as audio data and consecutive frames, to achieve greater accuracy. This study provides a foundation for developing real-time, scalable, ethical, and open-source solutions.

Structural health monitoring plays a critical role in ensuring structural safety by analyzing vibration responses from engineering systems. This paper proposes a Spectro-Temporal Alignment framework and a Hybrid Spectro-Temporal Fusion framework that integrate arrival-time interval descriptors with spectral features to capture both fine-scale and coarse-scale vibration dynamics. Experiments conducted on data collected from an LDS V406 electrodynamic shaker demonstrate that the proposed spectro-temporal representations significantly outperform conventional input formulations. The results indicate that a temporal resolution (Δτ) of 0.008 of 0.02 favors traditional machine learning models, whereas a finer resolution (Δτ) of 0.008 effectively unlocks the performance potential of deep learning architectures. Beyond classification accuracy, a comprehensive stability analysis based on condensed indices, including mean performance, standard deviation, coefficient of variation, and balanced score, shows that the proposed hybrid framework consistently achieves higher accuracy with substantially lower variability compared to baseline and alignment-only approaches. Overall, these results demonstrate that the proposed framework provides a robust, accurate, and reliable solution for vibration-based structural health monitoring.

Molecular property prediction integrates quantum chemistry, cheminformatics, and deep learning to connect molecular structure with physicochemical and biological behavior. This survey traces four complementary paradigms, including Quantum, Descriptor Machine Learning, Geometric Deep Learning, and Foundation Models, and outlines a unified taxonomy linking molecular representations, model architectures, and interdisciplinary applications. Benchmark analyses integrate evidence from both widely used datasets and datasets reflecting industry perspectives, encompassing quantum, physicochemical, physiological, and biophysical domains. The survey examines current standards in data curation, splitting strategies, and evaluation protocols, highlighting challenges including inconsistent stereochemistry, heterogeneous assay sources, and reproducibility limitations under random or poorly defined splits. These observations motivate the modernization of benchmark design toward more transparent, time- and scaffold-aware methodologies. We further propose three forward-looking directions: (i) physics-aware learning embedding quantum consistency, (ii) uncertainty-calibrated foundation models for trustworthy inference, and (iii) realistic multimodal benchmark ecosystems integrating computational and experimental data. Repository: https://github.com/Zongru-Li/Survey-and-Benchmarks-of-DL-for-Molecular-Property-Prediction-in-the-Foundation-Model-Era.

Multivariate time series classification (MTSC) plays a crucial role in various domains, including biomedical signal analysis and motion monitoring. However, existing approaches, particularly deep learning models, often require high computational resources, making them unsuitable for real-time applications or deployment on low-cost hardware, such as IoT devices and wearable systems. In this paper, we propose the Univariate Channel Fusion (UCF) method to deal with MTSC efficiently. UCF transforms multivariate time series into a univariate representation through simple channel fusion strategies such as the mean, median, or dynamic time warping barycenter. This transformation enables the use of any classifier originally designed for univariate time series, providing a flexible and computationally lightweight alternative to complex models. We evaluate UCF in five case studies covering diverse application domains, including chemical monitoring, brain-computer interfaces, and human activity analysis. The results demonstrate that UCF often outperforms baseline methods and state-of-the-art algorithms tailored for MTSC, while achieving substantial gains in computational efficiency, being particularly effective in problems with high inter-channel correlation.

Acute Myeloid Leukemia (AML) is one of the most life-threatening type of blood cancers, and its accurate classification is considered and remains a challenging task due to the visual similarity between various cell types. This study addresses the classification of the multiclasses of AML cells Utilizing YOLOv12 deep learning model. We applied two segmentation approaches based on cell and nucleus features, using Hue channel and Otsu thresholding techniques to preprocess the images prior to classification. Our experiments demonstrate that YOLOv12 with Otsu thresholding on cell-based segmentation achieved the highest level of validation and test accuracy, both reaching 99.3%.

Concept Bottleneck Models (CBMs) aim to improve interpretability in Deep Learning by structuring predictions through human-understandable concepts, but they provide no way to verify whether learned concepts align with the human's intended meaning, hurting interpretability. We introduce Prototype-Grounded Concept Models (PGCMs), which ground concepts in learned visual prototypes: image parts that serve as explicit evidence for the concepts. This grounding enables direct inspection of concept semantics and supports targeted human intervention at the prototype level to correct misalignments. Empirically, PGCMs achieve similar predictive performance as state-of-the-art CBMs while substantially improving transparency, interpretability, and intervenability.

Automated classification of electrocardiogram (ECG) signals is a useful tool for diagnosing and monitoring cardiovascular diseases. This study compares three traditional machine learning algorithms (Decision Tree Classifier, Random Forest Classifier, and Logistic Regression) and three deep learning models (Simple Convolutional Neural Network (CNN), Long Short-Term Memory (LSTM), and Complex CNN (ECGLens)) for the classification of ECG signals from the PTB-XL dataset, which contains 12-lead recordings from normal patients and patients with various cardiac conditions. The DL models were trained on raw ECG signals, allowing them to automatically extract discriminative features. Data augmentation using the Stationary Wavelet Transform (SWT) was applied to enhance model performance, increase the diversity of training samples, and preserve the essential characteristics of the ECG signals. The models were evaluated using multiple metrics, including accuracy, precision, recall, F1-score, and ROC-AUC. The ECG-Lens model achieved the highest performance, with 80% classification accuracy and a 90% ROC-AUC. These findings demonstrate that deep learning architectures, particularly complex CNNs substantially outperform traditional ML methods on raw 12-lead ECG data, and provide a practical benchmark for selecting automated ECG classification models and identifying directions for condition-specific model development.

Despite the high accuracy of 'black box' deep learning models, drug discovery still relies on protein-ligand interaction principles and heuristics. To improve interpretability of protein-small molecule binding predictions, we developed the PWRules framework, which applies binding affinity data to identify privileged small molecule fragments and subsequently defines complementary pairing rules between these fragments and protein words (semantic sequence units) through an interpretability module. The resulting word-fragment rules are then ranked by the PWScore function to prioritize active compounds. Evaluations on benchmark datasets show that PWScore achieves competitive performance comparable to the physics-based model (Glide) and the deep learning model (PSICHIC) and shows broad applicability for protein targets outside the training dataset, e.g., SARS-CoV-2 main protease. Notably, PWScore captures complementary interaction information, yielding superior enrichment performance when integrated with these established methods. Structural analysis of protein-ligand complexes indicates that learned word-fragment rules are significantly enriched near ligand-binding pockets, despite training without explicit structural guidance. By extracting and applying complementary pairing rules, PWRules provides an interpretable framework for drug discovery.

Porting deep learning algorithms to new hardware accelerators requires developers to repeatedly apply the same low-level optimizations -- quantization, memory access coalescing, tile size tuning, and architecture-specific workarounds -- to every Triton kernel in their code-base. This manual, repetitive effort is a major bottleneck: each kernel demands the same cycle of trial-and-error profiling against hardware constraints that vary across devices, yet the underlying optimization patterns remain largely consistent. We present Xe-Forge, a multi-stage LLM-powered pipeline that automates this process for Intel GPU. Given a functionally correct Triton kernel, the system applies up to nine optimization stages -- from algorithmic restructuring and operator fusion through block pointer modernization, GPU-specific tuning, and open-ended discovery -- each driven by a Chain-of-Verification-and-Refinement (CoVeR) agent that generates candidates, validates them on real hardware, and iterates on failures. A curated knowledge base encodes Intel GPU constraints (power-of-two warp counts, GRF modes, SLM sizing) that are absent from LLM training data, keeping the model within architecturally valid bounds. We evaluate Xe-Forge on 97 Level-2 KernelBench kernels and Flash Attention on the Intel Arc Pro B70, achieving a 1.17x geometric mean speedup over PyTorch eager with 67% of kernels improving, nine kernels exceeding 5x (up to 82x), and 2--13.3x speedups on Flash Attention across all tested configurations without regression -- demonstrating that structured domain knowledge with hardware-in-the-loop verification can systematically eliminate the repetitive porting effort that currently gates algorithm deployment on new accelerators.

Recent advances in Deep Learning (DL) have strengthened data-driven System Identification (SysID), with Neural and Fuzzy Ordinary Differential Equation (NODE/FODE) models achieving high accuracy in nonlinear dynamic modeling. Yet, system states in these frameworks are often reconstructed without clear physical meaning, and input contributions to the state derivatives remain difficult to interpret. To address these limitations, we propose Explainable FODE (xFODE), an interpretable SysID framework with integrated DL-based training. In xFODE, we define states in an incremental form to provide them with physical meanings. We employ fuzzy additive models to approximate the state derivative, thereby enhancing interpretability per input. To provide further interpretability, Partitioning Strategies (PSs) are developed, enabling the training of fuzzy additive models with explainability. By structuring the antecedent space during training so that only two consecutive rules are activated for any given input, PSs not only yield lower complexity for local inference but also enhance the interpretability of the antecedent space. To train xFODE, we present a DL framework with parameterized membership function learning that supports end-to-end optimization. Across benchmark SysID datasets, xFODE matches the accuracy of NODE, FODE, and NLARX models while providing interpretable insights.

Zeroth-order (ZO) methods are widely used when gradients are unavailable or prohibitively expensive, including black-box learning and memory-efficient fine-tuning of large models, yet their optimization dynamics in deep learning remain underexplored. In this work, we provide an explicit step size condition that exactly captures the (mean-square) linear stability of a family of ZO methods based on the standard two-point estimator. Our characterization reveals a sharp contrast with first-order (FO) methods: whereas FO stability is governed solely by the largest Hessian eigenvalue, mean-square stability of ZO methods depends on the entire Hessian spectrum. Since computing the full Hessian spectrum is infeasible in practical neural network training, we further derive tractable stability bounds that depend only on the largest eigenvalue and the Hessian trace. Empirically, we find that full-batch ZO methods operate at the edge of stability: ZO-GD, ZO-GDM, and ZO-Adam consistently stabilize near the predicted stability boundary across a range of deep learning training problems. Our results highlight an implicit regularization effect specific to ZO methods, where large step sizes primarily regularize the Hessian trace, whereas in FO methods they regularize the top eigenvalue.

Artificial intelligence (AI) is moving increasingly beyond prediction to support decisions in complex, uncertain, and dynamic environments. This shift creates a natural intersection with operations research and management science (OR/MS), which has long provided methodological foundations for sequential decision making under uncertainty. At the same time, deep learning advances, including feedforward neural networks, recurrent architectures, transformers, large language models (LLMs), and deep reinforcement learning, have expanded data-driven modeling for large-scale decisions. This tutorial presents an OR/MS-centered perspective on deep learning for sequential decision making under uncertainty, bridging neural architectures and OR/MS approaches to decision making. Its premise: deep learning complements optimization rather than replacing it. Deep learning brings adaptability and scalable approximation, whereas OR/MS provides the mathematical rigor to represent constraints, recourse, uncertainty, and decision quality. The tutorial reviews key decision making foundations, connects them to the major neural architectures in modern AI, and organizes the field around three central themes: predict-then-optimize and decision-aware learning, learning-based decision generation under constraints for continuous and discrete problems with temporal coupling, and deep reinforcement learning for sequential and combinatorial decision making. Impact spans supply chains, service systems, healthcare and epidemic response, agriculture, energy, environmental sustainability, and autonomous operations. This tutorial frames these developments as part of a shift from predictive AI toward decision-capable AI, highlighting OR/MS's role in shaping the next generation of integrated learning--optimization systems.

Background: Task-specific microscopy datasets are often small, making it difficult to train deep learning models that learn robust features. While self-supervised learning (SSL) has shown promise through pretraining on large, domain-specific datasets, generalizability across datasets with differing staining protocols and channel configurations remains underexplored. We investigated the generalizability of SSL models pretrained on ImageNet-1k and HPA FOV, evaluating their embeddings on OpenCell with and without fine-tuning, two channel-mismatch strategies, and varying fine-tuning data fractions. We additionally analyzed single-cell embeddings on a labeled OpenCell subset. Result: DINO-based ViT backbones pretrained on HPA FOV or ImageNet-1k transfer well to OpenCell even without fine-tuning. Fine-tuning further improved performance to 0.704 $\pm$ 0.027 (17 classes, multi-class labels). At the single-cell level, the HPA single-cell-pretrained model achieved the highest k-nearest neighbor performance across all neighborhood sizes (macro $F_1$ $\geq$ 0.515). Conclusion: SSL methods like DINO, pretrained on large domain-relevant datasets, enable effective use of deep learning features for fine-tuning on small, task-specific microscopy datasets.

Deep learning underlies most modern approaches and tools in computer vision, including biomedical imaging. However, for interactive semantic segmentation (often called pixel classification in this context) and interactive object-level classification (object classification), feature-based shallow learning remains widely used. This is due to the diversity of data in this domain, the lack of large pretraining datasets, and the need for computational and label efficiency. In contrast, state-of-the-art tools for many other vision tasks in microscopy - most notably cellular instance segmentation - already rely on deep learning and have recently benefited substantially from vision foundation models (VFMs), particularly SAM. Here, we investigate whether VFMs can also improve pixel and object classification compared to current approaches. To this end, we evaluate several VFMs, including general-purpose models (SAM, SAM2, SAM3, DINOv3) and domain-specific ones ($μ$SAM, PathoSAM, KRONOS), in combination with shallow learning and attentive probing on five diverse and challenging datasets. Our results demonstrate consistent improvements over hand-crafted features and provide a clear pathway toward practical improvements. Furthermore, our study establishes a benchmark for VFMs in microscopy and informs future developments in this area.

Accurate prediction of multivariate time series is essential for emerging network intelligent control, observability, and management functions. Existing statistical-based and shallow machine learning models have shown limited prediction capabilities on multivariate time series. They prioritize improvements in average prediction accuracy, while overlooking heterogeneous dependency structures and performance variability across individual time series. Recent advances in large language models have introduced new directions for multivariate time series forecasting; however, their application in conjunction with explicit structural dependency modeling remains relatively underexplored, especially in networked environments. In this paper, we present a topology-aware learning framework for large-scale network traffic prediction that explicitly models both temporal dynamics and structural dependencies in multivariate network time series. We first investigate a graph attention model designed to capture topology-induced correlations among network traffic time series. We then evaluate a fine-tuned large language model-based representations for improved generalization across heterogeneous traffic patterns. To further address the diversity of cross-correlations in high-dimensional traffic data, we introduce a clustering-based preprocessing stage that groups traffic flows with similar dependency characteristics prior to model training, reducing input complexity and improving learning stability. Experiments on real backbone traffic data show consistent improvements over statistical and recurrent neural network baselines. In addition to average accuracy, we evaluate performance across individual time series and observe reduced variability in prediction quality.

Generalization bounds for deep learning models are typically vacuous, not computable or restricted to specific model classes. In this paper, we tackle these issues by providing new disagreement-based certificates for the gap between the true risk of any two predictors. We then bound the true risk of the predictor of interest via a surrogate model that enjoys tight generalization guarantees, and by evaluating our disagreement bound on an unlabeled dataset.We empirically demonstrate the tightness of the obtained certificates and showcase the versatility of the approach by training surrogate models leveraging three different frameworks: sample compression, model compression and PAC-Bayes theory. Importantly, such guarantees are achieved without modifying the target model, nor adapting the training procedure to the generalization framework.

Recent advancements in deep learning have actively addressed complex challenges within the Computer-Aided Design (CAD) domain.However, most existing approaches rely on task-specifi c models requiring structural modifi cations for new tasks, and they predominantly focus on point clouds or images rather than the industry-standard Boundary Representation (B-rep) format. To address these limitations, we propose BrepCoder, a unifi ed Multimodal Large Language Model (MLLM) that performs diverse CAD tasks from B-rep inputs. By leveraging the code generation capabilities of Large Language Models (LLMs), we convert CAD modeling sequences into Python-like code and align them with B-rep. We then adopt a two-stage training strategy: First, pre-training on reverse engineering to learn geometric features and design logic. Second, eff ectively extending the model to various downstream tasks such as completion, error correction, and CAD-QA. Consequently, by interpreting B-rep as structural code, BrepCoder achieves superior generalization across diverse tasks, demonstrating its potential as a general-purpose CAD agent.

Privacy preserving machine learning deployments in sensitive deep learning applications; from medical imaging to autonomous systems; increasingly require combining multiple techniques. Yet, practitioners lack systematic guidance to assess the synergistic and non-additive interactions of these hybrid configurations, relying instead on isolated technique analysis that misses critical system level interactions. We introduce PrivacyBench, a benchmarking framework that reveals striking failures in privacy technique combinations with severe deployment implications. Through systematic evaluation across ResNet18 and ViT models on medical datasets, we uncover that FL + DP combinations exhibit severe convergence failure, with accuracy dropping from 98% to 13% while compute costs and energy consumption substantially increase. In contrast, FL + SMPC maintains near-baseline performance with modest overhead. Our framework provides the first systematic platform for evaluating privacy-utility-cost trade-offs through automated YAML configuration, resource monitoring, and reproducible experimental protocols. PrivacyBench enables practitioners to identify problematic technique interactions before deployment, moving privacy-preserving computer vision from ad-hoc evaluation toward principled systems design. These findings demonstrate that privacy techniques cannot be composed arbitrarily and provide critical guidance for robust deployment in resource-constrained environments.

In critical decision support systems based on medical imaging, the reliability of AI-assisted decision-making is as relevant as predictive accuracy. Although deep learning models have demonstrated significant accuracy, they frequently suffer from miscalibration, manifested as overconfidence in erroneous predictions. To facilitate clinical acceptance, it is imperative that models quantify uncertainty in a manner that correlates with prediction correctness, allowing clinicians to identify unreliable outputs for further review. To address this necessity, this paper proposes a probabilistic optimization framework grounded in Bayesian deep learning. Specifically, the Confidence-Uncertainty Boundary Curve (CUBC) is first explored as an intermediate operational target. Grounded in this target, a novel Confidence-Uncertainty Boundary Loss (CUB-Loss) is proposed to regularize the alignment between prediction confidence and uncertainty estimates during training, imposing penalties on high-certainty errors and low-certainty correct predictions. Upon completion of training optimization, a Boundary Curve Calibration Error (BCCE) metric is further introduced to measure the degree of boundary alignment in the calibrated model. Building on this measurement, a Dual Temperature Scaling (DTS) strategy is devised to perform post-hoc refinement, further adjusting the posterior predictive distribution across different confidence-uncertainty regions. The proposed framework is validated on three distinct medical imaging tasks: automatic screening of pneumonia, diabetic retinopathy detection, and identification of skin lesions. Empirical results demonstrate that the proposed approach improves uncertainty calibration across diverse modalities, maintains robust performance in data-scarce scenarios, and remains effective on severely imbalanced datasets, underscoring its potential for real clinical deployment.

We study the Pareto frontier (optimal trade-off) between utility and separation, a fairness criterion requiring predictive independence from sensitive attributes conditional on the true outcome. Through an information-theoretic lens, we prove a characterization of the utility-separation Pareto frontier, establish its concavity, and thereby prove the increasing marginal cost of separation in terms of utility. In addition, we characterize the conditions under which this trade-off becomes strict, providing a guide for trade-off selection in practice. Based on the theoretical characterization, we develop an empirical regularizer based on conditional mutual information (CMI) between predictions and sensitive attributes given the true outcome. The CMI regularizer is compatible with any deep model trained via gradient-based optimization and serves as a scalar monitor of residual separation violations, offering tractable guarantees during training. Finally, numerical experiments support our theoretical findings: across COMPAS, UCI Adult, UCI Bank, and CelebA, the proposed method substantially reduces separation violations while matching or exceeding the utility of established baseline methods. This study thus offers a provable, stable, and flexible approach to enforcing separation in deep learning.

Evidential Deep Learning (EDL) is a popular framework for uncertainty-aware classification that models predictive uncertainty via Dirichlet distributions parameterized by neural networks. Despite its popularity, its theoretical foundations and behavior under distributional shift remain poorly understood. In this work, we provide a principled statistical interpretation by proving that EDL training corresponds to amortized variational inference in a hierarchical Bayesian model with a tempered pseudo-likelihood. This perspective reveals a major drawback: standard EDL conflates epistemic and aleatoric uncertainty, leading to systematic overconfidence on out-of-distribution (OOD) inputs. To address this, we introduce Density-Informed Pseudo-count EDL (DIP-EDL), a new parametrization that decouples class prediction from the magnitude of uncertainty by separately estimating the conditional label distribution and the marginal covariate density. This separation preserves evidence in high-density regions while shrinking predictions toward a uniform prior for OOD data. Theoretically, we prove that DIP-EDL achieves asymptotic concentration. Empirically, we show that our method enhances interpretability and improves robustness and uncertainty calibration under distributional shift.

Deep learning has substantially advanced medical image segmentation, yet achieving robust generalization across diverse imaging modalities and anatomical structures remains a major challenge. A key contributor to this limitation lies in how existing architectures, ranging from CNNs to Transformers and their hybrids, primarily encode spatial information while overlooking frequency-domain representations that capture rich structural and textural cues. Although recent studies have begun exploring spectral information at the feature level, supervision-level integration of frequency cues-crucial for fine-grained object localization-remains largely untapped. To this end, we propose Phi-SegNet, a CNN-based architecture that incorporates phase-aware information at both architectural and optimization levels. The network integrates Bi-Feature Mask Former (BFMF) modules that blend neighboring encoder features to reduce semantic gaps, and Reverse Fourier Attention (RFA) blocks that refine decoder outputs using phase-regularized features. A dedicated phase-aware loss aligns these features with structural priors, forming a closed feedback loop that emphasizes boundary precision. Evaluated on five public datasets spanning X-ray, US, histopathology, MRI, and colonoscopy, Phi-SegNet consistently achieved state-of-the-art performance, with an average relative improvement of 1.54+/-1.26% in IoU and 0.98+/-0.71% in F1-score over the next best-performing model. In cross-dataset generalization scenarios involving unseen datasets from the known domain, it also exhibits robust and superior performance, highlighting its adaptability and modality-agnostic design. These findings demonstrate the potential of leveraging spectral priors in both feature representation and supervision, paving the way for generalized segmentation frameworks that excel in fine-grained object localization. Our code is available on GitHub.

Vulnerability detection methods based on deep learning (DL) have shown strong performance on benchmark datasets, yet their real-world effectiveness remains underexplored. Recent work suggests that both graph neural network (GNN)-based and transformer-based models, including large language models (LLMs), yield promising results when evaluated on curated benchmark datasets. These datasets are typically characterized by consistent data distributions and heuristic or partially noisy labels. In this study, we systematically evaluate two representative DL models-ReVeal and LineVul-across four representative datasets: Juliet, Devign, BigVul, and ICVul. Each model is trained independently on each respective dataset, and their code representations are analyzed using t-SNE to uncover vulnerability related patterns. To assess realistic applicability, we deploy these models along with four pretrained LLMs, Claude 3.5 Sonnet, GPT-o3-mini, GPT-4o, and GPT-5 on a curated dataset, VentiVul, comprising 20 recently (May 2025) fixed vulnerabilities from the Linux kernel. Our experiments reveal that current models struggle to distinguish vulnerable from non-vulnerable code in representation space and generalize poorly across datasets with differing distributions. When evaluated on VentiVul, our newly constructed time-wise out-of-distribution dataset, performance drops sharply, with most models failing to detect vulnerabilities reliably. These results expose a persistent gap between academic benchmarks and real-world deployment, emphasizing the value of our deployment-oriented evaluation framework and the need for more robust code representations and higher-quality datasets.

As deep learning (DL) techniques become integral to various applications, ensuring model fairness while maintaining high performance has become increasingly critical, particularly in sensitive fields such as medical diagnosis. Although a variety of bias-mitigation methods have been proposed, many rely on computationally expensive debiasing strategies or suffer substantial drops in model accuracy, which limits their practicality in real-world, resource-constrained settings. To address this issue, we propose a fairness-oriented low rank factorization (LRF) framework that leverages singular value decomposition (SVD) to improve DL model fairness. Unlike traditional SVD, which is mainly used for model compression by decomposing and reducing weight matrices, our work shows that SVD can also serve as an effective tool for fairness enhancement. Specifically, we observed that elements in the unitary matrices obtained from SVD contribute unequally to model bias across groups defined by sensitive attributes. Motivated by this observation, we propose a method, named FairLRF, that selectively removes bias-inducing elements from unitary matrices to reduce group disparities, thus enhancing model fairness. Extensive experiments show that our method outperforms conventional LRF methods as well as state-of-the-art fairness-enhancing techniques in terms of improving fairness while maintaining accuracy. Additionally, an ablation study examines how major hyper-parameters may influence the performance of processed models. To the best of our knowledge, this is the first work utilizing SVD not primarily for compression but for fairness enhancement of DL classifications.

Laryngeal cancer imaging research lacks standardised public datasets to enable reproducible deep learning (DL) model development. We present LaryngealCT, a curated benchmark of 1,029 computed tomography (CT) scans aggregated from six collections from The Cancer Imaging Archive (TCIA). Uniform 1 mm isotropic volumes of interest encompassing the larynx were extracted using a weakly supervised parameter search framework validated by clinical experts. Six 3D DL architectures (custom 3D CNN, ResNet18,50,101, DenseNet121 and MedicalNet-pretrained ResNet50) were benchmarked on (i) early (Tis,T1,T2) vs. advanced (T3,T4) and (ii) T4 vs. non-T4 classification tasks. On the independent test set, the 3D CNN achieved the strongest overall performance across global and per-class metrics (Accuracy 0.854, F1-macro 0.841) in early vs. advanced classification. In the T4 task, AU-ROC values exceeded 0.82 for most models, but sensitivity for T4 disease remained limited (less than or equal to 0.412), with ResNet101 showing the most promising calibrated T4 recall (0.706. Model explainability assessed using GradCAMpp with thyroid cartilage overlays for T4 classification task revealed anatomically plausible peri-cartilage activations, although spatial overlap was modest. Through open-source data, pretrained models, and integrated explainability tools, LaryngealCT offers a reproducible foundation for AI-driven research to support future clinical decision-making in laryngeal oncology.

Large language models (LLMs) have shown strong performance on code translation between widely used programming languages. However, translation becomes much less reliable for domain-specific code, where correctness depends on framework-specific APIs and execution semantics. One example is translating deep-learning code from PyTorch to JAX, where LLM outputs often contain subtle bugs or non-idiomatic usage that prevents execution or changes behavior. Prior work suggests that curated bug-fix data from LLM-generated code can help improve code generation quality, but such resources are still limited for PyTorch-to-JAX translation. In this work, we introduce T2J, a benchmark of LLM translation bugs paired with developer-written fixes for PyTorch-to-JAX code. We start from 20 kernels in the TorchLeet dataset, translate them to JAX using the weak LLM gpt-4o-mini, and hire software developers to debug and repair the generated JAX implementations. We then use T2J to improve PyTorch-to-JAX translation for the weak LLM gpt-4o-mini via in-context learning. Our evaluation shows that using T2J yields up to 20% improvement of our proposed metric T2J-CodeTrans-Score.

Learning rate warm-up -- increasing the learning rate at the beginning of training -- has become a ubiquitous heuristic in modern deep learning, yet its theoretical foundations remain poorly understood. In this work, we provide a principled explanation for why warm-up improves training. We rely on a generalization of the $(L_0, L_1)$-smoothness condition, which bounds local curvature as a linear function of the loss suboptimality and exhibits desirable closure properties. We show -- both theoretically and empirically -- that this condition is satisfied by common neural architectures and accurately captures the curvature of the optimization landscape early in training. Adapting the learning rate in response to this curvature condition naturally induces a warm-up-like schedule, and we show that this choice yields provably faster convergence guarantees than using a fixed learning rate. Experiments on language and vision models show that the resulting one-parameter warm-up schedule can match tuned linear warm-up and improve over no warm-up.

Reliable detection of bearing faults is essential for maintaining the safety and operational efficiency of rotating machinery. While recent advances in machine learning (ML), particularly deep learning, have shown strong performance in controlled settings, many studies fail to generalize to real-world applications due to methodological flaws, most notably data leakage. This paper investigates the issue of data leakage in vibration-based bearing fault diagnosis and its impact on model evaluation. We demonstrate that common dataset partitioning strategies, such as segment-wise and condition-wise splits, introduce spurious correlations that inflate performance metrics. To address this, we propose a rigorous, leakage-free evaluation methodology centered on bearing-wise data partitioning, ensuring no overlap between the physical components used for training and testing. Additionally, we reformulate the classification task as a multi-label problem, enabling the detection of co-occurring fault types and the use of prevalence-independent metrics based on the ROC curve. Beyond preventing leakage, we also examine the effect of dataset diversity on generalization, showing that the number of unique training bearings is a decisive factor for achieving robust performance. We evaluate our methodology on four widely adopted datasets: Case Western Reserve University (CWRU), Paderborn University (PU), University of Ottawa (UORED-VAFCLS) and Hanoi University of Science and Technology (HUST bearing). This study highlights the importance of leakage-aware evaluation protocols and provides practical guidelines for dataset partitioning, model selection, and validation, fostering the development of more trustworthy ML systems for industrial fault diagnosis applications.

Cardiovascular diseases (CVDs) are the leading cause of death worldwide, accounting for approximately 17.9 million deaths each year. Early detection is critical, creating a demand for accurate and inexpensive pre-screening methods. Deep learning has recently been applied to classify abnormal heart sounds indicative of CVDs using synchronised phonocardiogram (PCG) and electrocardiogram (ECG) signals, as well as multichannel PCG (mPCG). However, state-of-the-art architectures remain underutilised due to the limited availability of synchronised and multichannel datasets. Augmented datasets and pre-trained models provide a pathway to overcome these limitations, enabling transformer-based architectures to be trained effectively. This work combines traditional signal processing with denoising diffusion models, WaveGrad and DiffWave, to create an augmented dataset to fine-tune a Wav2Vec 2.0-based classifier on multimodal and multichannel heart sound datasets. The approach achieves state-of-the-art performance. On the Computing in Cardiology (CinC) 2016 dataset of single channel PCG, accuracy, unweighted average recall (UAR), sensitivity, specificity and Matthew's correlation coefficient (MCC) reach 92.48%, 93.05%, 93.63%, 92.48%, 94.93% and 0.8283, respectively. Using the synchronised PCG and ECG signals of the training-a dataset from CinC, 93.14%, 92.21%, 94.35%, 90.10%, 95.12% and 0.8380 are achieved for accuracy, UAR, sensitivity, specificity and MCC, respectively. Using a wearable vest dataset consisting of mPCG data, the model achieves 77.13% accuracy, 74.25% UAR, 86.47% sensitivity, 62.04% specificity, and 0.5082 MCC. These results demonstrate the effectiveness of transformer-based models for CVD detection when supported by augmented datasets, highlighting their potential to advance multimodal and multichannel heart sound classification.

Generalized extreme value models capture dependence among choice alternatives in discrete choice modeling, but require this dependence to be predefined, symmetric, and shared uniformly across individuals. Recent efforts to synergize discrete choice models with deep neural networks have improved predictive performance but still cannot explicitly represent alternative dependence within neural architectures. To address these gaps, we introduce the alternative graph -- a graph in which nodes represent choice alternatives and edges encode their dependence -- and propose Alternative Graph Neural Networks (Alt-GNNs), a family of GNN-based discrete choice models that embed alternative dependence within a unified framework. Theoretically, Alt-GNNs incorporate multinomial logit, nested logit, and ASU-DNN as special cases and enable innovative model designs, including Nested Alt-GNN, Complete Alt-GNN, and Attention Alt-GNN. Alt-GNNs are consistent with random utility maximization theory, enforce behavioral constraints through alternative graphs, and offer a novel graph-based interpretation of utility functions. Empirically, on two travel mode choice datasets from London and Chicago, Alt-GNNs significantly improve predictive performance over all benchmark models in mode choice modeling because of their flexible alternative graph design and vast hyperparameter space. Even the simplest Alt-GNN variant -- Nested Alt-GNN -- generalizes the nested logit model while preserving its unique two-layer substitution properties, enabling graph-based behavioral constraints over otherwise unconstrained behavioral patterns from deep neural networks.

Deep learning (DL) has transformed neuroimaging by delivering state-of-the-art performance with reduced computation times. Yet, the numerical uncertainty inherent to DL training remains largely underexplored despite its potential to significantly impact the reliability of model outcomes. We show that training the FastSurfer segmentation model introduces substantial numerical uncertainty that exceeds its non-DL counterpart (FreeSurfer 7.3.2) in cortical regions, potentially impacting downstream clinical results. We also characterize this training-time uncertainty using random seed perturbations and demonstrate that seed-induced variability is structurally comparable to numerical variability. We then show that seed variability can be leveraged as a data augmentation technique through ensembling to improve downstream brain age regression performance. These findings position numerical uncertainty during DL training as a substantive factor in neuroimaging reliability, with measurable consequences for downstream tasks, and demonstrate that it can simultaneously be harnessed as a data augmentation technique.

Cervical cancer remains a significant global health concern and a leading cause of cancer-related deaths among women. Early detection through Pap smear tests is essential to reduce mortality rates; however, the manual examination is time consuming and prone to human error. This study proposes a deep learning framework that integrates U-Net for segmentation and a classification model to enhance diagnostic performance. The Herlev Pap Smear Dataset, a publicly available cervical cell dataset, was utilized for training and evaluation. The impact of segmentation on classification performance was evaluated by comparing the model trained on segmented images and another trained on non-segmented images. Experimental results showed that the use of segmented images marginally improved the model performance on precision (about 0.41 percent higher) and F1-score (about 1.30 percent higher), which suggests a slightly more balanced classification performance. While segmentation helps in feature extraction, the results showed that its impact on classification performance appears to be limited. The proposed framework offers a supplemental tool for clinical applications, which may aid pathologists in early diagnosis.

Brain tumour MRI typically requires both pre- and post-contrast imaging, but gadolinium is not always desirable (frequent follow-up, renal impairment, allergy, paediatric patients). We developed and validated a deep learning model to predict tumour contrast enhancement from non-contrast MRI alone. We assembled 11,089 brain MRI studies (2006-2024) from 10 datasets across four countries and three continents, spanning adult and paediatric populations with glioma, meningioma, metastases, and post-resection appearances. Three architectures were trained to detect and segment enhancing tumour from T1w, T2w and FLAIR alone. Performance was assessed in a 1,109-study held-out test set (primary endpoint: patient-level enhancement detection; secondary: voxel-level Dice). Eleven expert radiologists attempted the same task on a 564-case subset (100 cases each), blinded to history, prior imaging, and referral. The best model, nnU-Net, achieved 83.0% balanced accuracy (95% CI 79.1-87.2; sensitivity 91.5%, specificity 74.4%) for detection, with R2 = 0.859 for enhancement volume. Of enhancing cases, 76.8% reached Dice >= 0.3, 67.5% >= 0.5, and 50.2% >= 0.7. Under blinded conditions, radiologists' majority vote was lower (71.7% balanced accuracy; sensitivity 77.6%, specificity 65.8%). The proportion reaching Dice >= 0.3 varied by pathology (meningioma 93%, presurgical glioma 76%, metastases 74%, postoperative glioma 74%) and was lowest for paediatric cases (45%). Deep learning can identify contrast-enhancing brain tumours from non-contrast MRI. These models show promise as a triage or decision-support adjunct, such as in flagging studies likely to enhance so that contrast can be added to a non-contrast protocol, and may reduce gadolinium dependence in neuro-oncology imaging. Future work should optimise these models with radiologists.

End-to-end deep learning has achieved impressive results but often relies on large labeled datasets, exhibits limited generalization to unseen scenarios, and incurs substantial computational cost. Classical optimization methods, in contrast, are more data-efficient and lightweight but frequently suffer from slow convergence. Learned optimizers aim to bridge this gap, yet existing approaches have focused primarily on first-order methods, while learned second-order optimization has received much less attention. We introduce L-SR1, a learned second-order optimizer inspired by the classical Symmetric Rank-One (SR1) method. At its core, L-SR1 employs a Projection-Guided Secant Mechanism (PGSM) that generates positive semi-definite preconditioners and biases meta-training toward the quasi-Newton secant relation. Through controlled analytic benchmarks, we study stability, generalization across problem dimensions, and search direction quality, and further evaluate L-SR1 on Monocular Human Mesh Recovery (HMR), where it outperforms both classical and learned optimization-based baselines. With a compact model and no reliance on task-specific fine-tuning or annotated data, L-SR1 demonstrates strong generalization and can be integrated into a broad range of iterative optimization problems to accelerate convergence and reduce the required number of iterations.

Explanations of cognitive behavior often appeal to computations over representations. What does it take for a system to implement a given computation over suitable representational vehicles within that system? We argue that the language of causality -- and specifically the theory of causal abstraction -- provides a fruitful lens on this topic. Drawing on current discussions in deep learning with artificial neural networks, we illustrate how classical themes in the philosophy of computation and cognition resurface in contemporary machine learning. We offer an account of computational implementation grounded in causal abstraction, and examine the role for representation in the resulting picture. We argue that these issues are most profitably explored in connection with generalization and prediction.

Sleep stage classification is critical for diagnosing and managing disorders like sleep apnea and insomnia. However, conventional methods like polysomnography are costly and impractical for long-term, home-based monitoring. This study presents an energy-efficient approach for detecting four sleep stages (wake, rapid eye movement (REM), light sleep, deep sleep) using a single-lead electrocardiogram (ECG) signal. We evaluate various machine learning and deep learning models, introducing two windowing strategies: (1) a 5-minute window with 30-second steps for machine learning and (2) a 30-second window with 10-second steps for deep learning, enabling 10-second temporal resolution for real-time predictions. While deep learning models like MobileNet-v1 achieve high accuracy (92%) and F1-score (91%), their energy demands make them unsuitable for wearables. To address this, we design SleepLiteCNN, optimized for ECG-based sleep staging, achieving 89% accuracy and 89% F1-score while minimizing energy use. Applying 8-bit quantization further reduces energy consumption to 5.48 microJ per inference, with 90% accuracy and F1-score. Additionally, field-programmable gate array (FPGA) deployment shows significant reductions in resource usage. This approach provides a practical, energy-efficient solution for continuous ECG-based sleep monitoring in resource-constrained wearable devices.

Monitoring respiration parameters such as respiratory rate could be beneficial to understand the impact of training on equine health and performance and ultimately improve equine welfare. In this work, we compare deep learning-based methods to an adapted signal processing method to automatically detect cyclic respiratory events and extract the dynamic respiratory rate from microphone recordings during high intensity exercise in Standardbred trotters. Our deep learning models are able to detect exhalation sounds (median F1 score of 0.94) in noisy microphone signals and show promising results on unlabelled signals at lower exercising intensity, where the exhalation sounds are less recognisable. Temporal convolutional networks were better at detecting exhalation events and estimating dynamic respiratory rates (median F1: 0.94, Mean Absolute Error (MAE) $\pm$ Confidence Intervals (CI): 1.44$\pm$1.04 bpm, Limits Of Agreements (LOA): 0.63$\pm$7.06 bpm) than long short-term memory networks (median F1: 0.90, MAE$\pm$CI: 3.11$\pm$1.58 bpm) and signal processing methods (MAE$\pm$CI: 2.36$\pm$1.11 bpm). This work is the first to automatically detect equine respiratory sounds and automatically compute dynamic respiratory rates in exercising horses. In the future, our models will be validated on lower exercising intensity sounds and different microphone placements will be evaluated in order to find the best combination for regular monitoring.

Endoscopic depth estimation is a critical technology for improving the safety and precision of minimally invasive surgery. It has attracted considerable attention from researchers in medical imaging, computer vision, and robotics. Over the past decade, a large number of methods have been developed. Despite the existence of several related surveys, a comprehensive overview focusing on recent deep learning-based techniques is still limited. This paper endeavors to bridge this gap by comprehensively reviewing the state-of-the-art literature. Specifically, we provide a thorough survey of the field from three key perspectives: data, methods, and applications. Firstly, at the data level, we describe the acquisition process of publicly available datasets. Secondly, at the methodological level, we introduce both monocular and stereo deep learning-based approaches for endoscopic depth estimation. Thirdly, at the application level, we identify the specific challenges and corresponding solutions for the clinical implementation of depth estimation technology, situated within concrete clinical scenarios. Finally, we outline potential directions for future research, such as domain adaptation, real-time implementation, and the synergistic fusion of depth information with sensor technologies, thereby providing a valuable starting point for researchers to engage with and advance the field toward clinical translation.

Ultra-high resolution 7 tesla (7T) magnetic resonance imaging (MRI) provides detailed anatomical views, offering better signal-to-noise ratio, resolution and tissue contrast than 3T MRI, though at the cost of accessibility. We present an advanced deep learning model for synthesizing 7T brain MRI from 3T brain MRI. Paired 7T and 3T T1-weighted images were acquired from 172 participants (124 cognitively unimpaired, 48 impaired) from the Swedish BioFINDER-2 study. To synthesize 7T MRI from 3T images, we trained two models: a specialized U-Net, and a U-Net integrated with a generative adversarial network (GAN U-Net). Our models outperformed two previous state-of-the-art 3T-to-7T models in image-based evaluation metrics. Four blinded MRI professionals judged our synthetic 7T images as comparable in detail to real 7T images, and superior in subjective visual quality to 7T images, due to the reduction of artifacts. Using both SynthSeg and NextBrain, automated segmentations of the synthetic 7T images were more similar to real 7T segmentations than automated segmentations from the 3T images that were used to synthesize the 7T images. Finally, synthetic 7T images showed similar performance to real 3T images in downstream prediction of cognitive status using MRI derivatives (n=3,168). In all, we show that synthetic T1-weighted brain images approaching 7T quality can be generated from 3T images, which may improve image quality and segmentation, without compromising performance in downstream tasks. Future directions, possible clinical use cases, and limitations are discussed.

Modern Machine Learning (ML) and Deep Neural Networks (DNNs) often operate on high-dimensional data and rely on overparameterized models, where classical low-dimensional intuitions break down. In particular, the proportional regime where the data dimension, sample size, and number of model parameters are all large and comparable, gives rise to novel and sometimes counterintuitive behaviors. This paper extends traditional Random Matrix Theory (RMT) beyond eigenvalue-based analysis of linear models to address the challenges posed by nonlinear ML models such as DNNs in this regime. We introduce the concept of High-dimensional Equivalent, which unifies and generalizes both Deterministic Equivalent and Linear Equivalent, to systematically address three technical challenges: high dimensionality, nonlinearity, and the need to analyze generic eigenspectral functionals. Leveraging this framework, we provide precise characterizations of the training and generalization performance of linear models, nonlinear shallow networks, and deep networks. Our results capture rich phenomena, including scaling laws, double descent, and nonlinear learning dynamics, offering a unified perspective on the theoretical understanding of deep learning in high dimensions.

Training deep learning models on single-cell datasets with hundreds of millions of cells requires loading data from disk, as these datasets exceed available memory. While random sampling provides the data diversity needed for effective training, it is prohibitively slow due to the random access pattern overhead, whereas sequential streaming achieves high throughput but introduces biases that degrade model performance. We present scDataset, a PyTorch data loader that enables efficient training from on-disk data with seamless integration across diverse storage formats. Our approach combines block sampling and batched fetching to achieve quasi-random sampling that balances I/O efficiency with minibatch diversity. On Tahoe-100M, a dataset of 100 million cells, scDataset achieves more than two orders of magnitude speedup compared to true random sampling while working directly with AnnData files. We provide theoretical bounds on minibatch diversity and empirically show that scDataset matches the performance of true random sampling across multiple classification tasks and model architectures.

Automated evaluation of movement quality can enhance physiotherapeutic treatment and sports training by providing objective, real-time feedback. However, deep learning models that assess movements captured by inertial measurement units (IMUs) are often limited by data scarcity, class imbalance, and label ambiguity. We present a data augmentation method that generates IMU data using musculoskeletal simulations integrated with systematic modifications of movement trajectories. The approach enforces anatomically plausible kinematic constraints and enables automatic labeling by combining inverse kinematic parameters with a knowledge-based evaluation strategy. Across four datasets of varying complexity, augmented variants closely resemble real-world data and contribute to gains in classification accuracy, generalization to unseen subjects, and patient-specific fine-tuning from few examples. The magnitude of these gains varies with dataset properties, in particular class balance and label ambiguity. These findings indicate that musculoskeletal simulation-based augmentation can address common challenges faced by deep learning applications in physiotherapeutic exercise evaluation.

A proposition that connects randomness and compression is put forward via Gibbs entropy over set of measurement vectors associated with a compression process. In building this connection, we use a performance of a learning task as a probe of compression, over series of compression cycles within a cascade. The Gibbs entropy at each cycle measures the degree of randomness. Consequently a lossy compression process can be seen as an equivalent to {\it directed randomness} that preserves information content under certain bounds of Gibbs entropy and the performance of the learning task. The term directed means we guide the compression process with set of mathematical rules on how to reduce the model size. We formulate this connection with a theorem using a $δ$ and $ε$ bounds, and demonstrated a logical proof via comonotonic relationship within a very small decrease in compression ratio and the performance. We have showcase the validity of this proposition with a canonical vision task in deep learning with three different model compression processes as {\it a baseline model}. We use the following, simpler to more complex model compression approaches: (1) random pruning, (2) magnitude pruning, and (3) a more complex compression by using dual tomographic compression, which utilizes compressed sensing in dual fashion. We use remaining weights of deep learning network as a measurement vector where we measure the Gibbs entropy. The proposition is supported with the experimental evidence, resulting in very high correlation between learning performance and the Gibbs entropy over compression ratios for all different compression processes. We show case the idea that there is an inherent computable connection between compression probed by performance degradation and randomness from an entropy measure on the learned model.

Tensorizing a neural network involves reshaping some or all of its dense weight matrices into higher-order tensors and approximating them using low-rank tensor network decompositions. This technique has shown promise as a model compression strategy for large-scale neural networks. However, despite encouraging empirical results, tensorized neural networks (TNNs) remain underutilized in mainstream deep learning. In this position paper, we offer a perspective on both the potential and current limitations of TNNs. We argue that TNNs represent a powerful yet underexplored framework for deep learning--one that deserves greater attention from both engineering and theoretical communities. Beyond compression, we highlight the value of TNNs as a flexible class of architectures with distinctive scaling properties and increased interpretability. A central feature of TNNs is the presence of bond indices, which introduce new latent spaces not found in conventional networks. These internal representations may provide deeper insight into the evolution of features across layers, potentially advancing the goals of mechanistic interpretability. We conclude by outlining several key research directions aimed at overcoming the practical barriers to scaling and adopting TNNs in modern deep learning workflows.

Discrete choice models (DCMs) are used to analyze individual decision-making in contexts such as transportation choices, political elections, and consumer preferences. DCMs play a central role in applied econometrics by enabling inference on key economic variables, such as marginal rates of substitution, rather than focusing solely on predicting choices on new unlabeled data. However, while traditional DCMs offer high interpretability and support for point and interval estimation of economic quantities, these models often underperform in predictive tasks compared to deep learning (DL) models. Despite their predictive advantages, DL models remain largely underutilized in discrete choice due to concerns about their lack of interpretability, unstable parameter estimates, and the absence of established methods for uncertainty quantification. Here, we introduce a deep learning model architecture specifically designed to integrate with approximate Bayesian inference methods, such as Stochastic Gradient Langevin Dynamics (SGLD). Our proposed model collapses to behaviorally informed hypotheses when data is limited, mitigating overfitting and instability in underspecified settings while retaining the flexibility to capture complex nonlinear relationships when sufficient data is available. We demonstrate our approach using SGLD through a Monte Carlo simulation study, evaluating both predictive metrics--such as out-of-sample balanced accuracy--and inferential metrics--such as empirical coverage for marginal rates of substitution interval estimates. Additionally, we present results from two empirical case studies: one using revealed mode choice data in NYC, and the other based on the widely used Swiss train choice stated preference data.

Establishing semantic correspondence is a challenging task in computer vision, aiming to match keypoints with the same semantic information across different images. Benefiting from the rapid development of deep learning, remarkable progress has been made over the past decade. However, a comprehensive review and analysis of this task remains absent. In this paper, we present the first extensive survey of semantic correspondence methods. We first propose a taxonomy to classify existing methods based on the type of their method designs. These methods are then categorized accordingly, and we provide a detailed analysis of each approach. Furthermore, we aggregate and summarize the results of methods in literature across various benchmarks into a unified comparative table, with detailed configurations to highlight performance variations. Additionally, to provide a detailed understanding on existing methods for semantic matching, we thoroughly conduct controlled experiments to analyse the effectiveness of the components of different methods. Finally, we propose a simple yet effective baseline that achieves state-of-the-art performance on multiple benchmarks, providing a solid foundation for future research in this field. We hope this survey serves as a comprehensive reference and consolidated baseline for future development. Code is publicly available at: https://github.com/Visual-AI/Semantic-Correspondence.

Remote sensing images (RSIs) capture both natural and human-induced changes on the Earth's surface. Semantic segmentation (SS) of RSIs enables the fine-grained interpretation of surface features, making it a critical task in RS analysis. With the increasing diversity and volume of RSIs collected by sensors on various platforms, traditional processing methods struggle to maintain efficiency and accuracy. In response, deep learning (DL) has emerged as a transformative approach, enabling substantial advances in remote sensing image semantic segmentation (RSISS). As researchers continue to explore end-to-end SS, DL-based RSISS has undergone a structural evolution from pixel-level and patch-based classification to tile-level and image-level segmentation. However, existing reviews often focus on individual components, such as supervision strategies or fusion stages, and lack a unified operational perspective aligned with segmentation granularity and the training/inference pipeline. This paper provides a comprehensive review by organizing DL-based RSISS into a pixel-patch-tile-image hierarchy, covering early pixel-based methods, prevailing patch-based and tile-based techniques, and emerging image-based approaches. Specifically, the survey analyzes four supervision strategies, eleven feature extraction strategies, and six information fusion strategies, revealing the field's progression from local to global feature extraction, from traditional DL architectures to foundation models, and from unimodal to multimodal segmentation. This review offers a holistic and structured understanding of DL-based RSISS, highlighting representative datasets, comparative insights, and open challenges related to data scale, model efficiency, domain robustness, and multimodal integration. Furthermore, to facilitate reproducible research, curated code collections are provided at: https://github.com/quanweiliu/RSISS.

Despite growing empirical evidence of bias amplification in machine learning, its theoretical foundations remain poorly understood. We develop a formal framework for majority-minority learning tasks, showing how standard training can favor majority groups and produce stereotypical predictors that neglect minority-specific features. Assuming population and variance imbalance, our analysis reveals three key findings: (i) the close proximity between ``full-data'' and stereotypical predictors, (ii) the dominance of a region where training the entire model tends to merely learn the majority traits, and (iii) a lower bound on the additional training required. Our results are illustrated through experiments in deep learning for tabular and image classification tasks.

Deep neural networks (DNNs) play a crucial role in the field of artificial intelligence, and their security-related testing has been a prominent research focus. By inputting test cases, the behavior of models is examined for anomalies, and coverage metrics are utilized to determine the extent of neurons covered by these test cases. With the widespread application and advancement of DNNs, different types of neural behaviors have garnered attention, leading to the emergence of various coverage metrics for neural networks. However, there is currently a lack of empirical research on these coverage metrics, specifically in analyzing the relationships and patterns between model depth, configuration information, and neural network coverage. This paper aims to investigate the relationships and patterns of four coverage metrics: primary functionality, boundary, hierarchy, and structural coverage. A series of empirical experiments were conducted, selecting LeNet, VGG, and ResNet as different DNN architectures, along with 10 models of varying depths ranging from 5 to 54 layers, to compare and study the relationships between different depths, configuration information, and various neural network coverage metrics. Additionally, an investigation was carried out on the relationships between modified decision/condition coverage and dataset size. Finally, three potential future directions are proposed to further contribute to the security testing of DNN Models.

We derive a differential equation that governs the evolution of the generalization gap when a model is trained by gradient descent-based methods. This differential equation is driven by two key quantities, a contraction factor that brings together trajectories corresponding to slightly different datasets, and a perturbation factor that accounts for them training on different datasets. The coupled decay of contraction and perturbation guarantees a controlled accumulation of generalization gap during training. We analyze this differential equation to show that the generalization gap is given by a quadratic form that consists of an ``effective Gram matrix'' that depends upon the training trajectory and a certain residual of the predictor at initialization. Our framework is applicable to general deep networks and smooth loss functions. In numerical experiments on different neural network architectures, datasets and sample sizes, we show that this quadratic form accurately captures the actual generalization gap. We also show how to instantiate our framework in a number of examples via analytical calculations. For example, for high-dimensional linear regression, our framework matches existing calculations of generalization gap in the literature exactly in under-parameterized, over-parameterized and critical regimes.

In the context of multivariate nonparametric regression with missing covariates, we propose Pattern Embedded Neural Networks (PENNs), which can be applied in conjunction with any existing imputation technique. In addition to a neural network trained on the imputed data, PENNs pass the vectors of observation indicators through a second neural network to provide a compact representation. The outputs are then combined in a third neural network to produce final predictions. Our main theoretical result exploits an assumption that the observation patterns can be partitioned into cells on which the Bayes regression function behaves similarly, and belongs to a compositional Hölder class. It provides a finite-sample excess risk bound that holds for an arbitrary missingness mechanism, and in combination with a complementary minimax lower bound, demonstrates that our PENN estimator attains in typical cases the minimax rate of convergence as if the cells of the partition were known in advance, up to a poly-logarithmic factor in the sample size. Numerical experiments on simulated, semi-synthetic and real data confirm that the PENN estimator consistently improves, often dramatically, on standard neural networks without pattern embedding. Code to reproduce our experiments, as well as a tutorial on how to apply our method, is publicly available.

Modeling natural phenomena with artificial neural networks (ANNs) often provides highly accurate predictions. However, ANNs often suffer from over-parameterization, complicating interpretation and raising uncertainty issues. Bayesian neural networks (BNNs) address the latter by representing weights as probability distributions, allowing for predictive uncertainty evaluation. Latent binary Bayesian neural networks (LBBNNs) further handle structural uncertainty and sparsify models by removing redundant weights. This article advances LBBNNs by enabling covariates to skip to any succeeding layer or be excluded, simplifying networks and clarifying input impacts on predictions. This further allows us to learn simpler structures (e.g., linear or even constant intercept only models) when appropriate. Furthermore, the input-skip LBBNN (ISLaB) approach reduces network density significantly compared to standard LBBNNs, achieving over 99% reduction for small networks and over 99.9% for larger ones, while still maintaining high predictive accuracy and uncertainty quantification. For example, on MNIST, we reached 97% accuracy and great calibration with just 935 weights, reaching state-of-the-art for compression of neural networks. Furthermore, the proposed method accurately identifies the true covariates and adjusts for system non-linearity. The main contribution is the introduction of active paths, enhancing directly designed global and local explanations within the LBBNN framework. The latter are exact with theoretical guarantees and do not require post hoc external tools.

Deep learning, when integrated with a large amount of training data, has the potential to outperform machine learning in terms of high accuracy. Recently, privacy-preserving deep learning has drawn significant attention of the research community. Different privacy notions in deep learning include privacy of data provided by data-owners and privacy of parameters and/or hyperparameters of the underlying neural network. Federated learning is a popular privacy-preserving execution environment where data-owners participate in learning the parameters collectively without leaking their respective data to other participants. However, federated learning suffers from certain security/privacy issues. In this paper, we propose Split-n-Chain, a variant of split learning where the layers of the network are split among several distributed nodes. Split-n-Chain achieves several privacy properties: data-owners need not share their training data with other nodes, and no nodes have access to the parameters and hyperparameters of the neural network (except that of the respective layers they hold). Moreover, Split-n-Chain uses blockchain to audit the computation done by different nodes. Our experimental results show that: Split-n-Chain is efficient, in terms of time required to execute different phases, and the training loss trend is similar to that for the same neural network when implemented in a monolithic fashion.

Hyperspectral imaging is a powerful bioimaging tool which can uncover novel insights, thanks to its sensitivity to the intrinsic properties of materials. However, this enhanced contrast comes at the cost of system complexity, constrained by an inherent trade-off between spatial, spectral, and temporal resolution. To overcome this limitation, we present a self-supervised deep learning-based approach that restores and enhances pixel resolution post-acquisition without requiring external training data beyond the images to be restored. Fine-tuned using metrics aligned with the imaging model, our physics-aware method achieves a 16$\times$ pixel super-resolution enhancement and a 12$\times$ imaging speedup without the need of additional training data for transfer learning. Applied to both synthetic and experimental data from five different sample types, including healthy and diseased tissues, we demonstrate that the model preserves biological integrity, as we did not detect systematic loss of biological features or biologically consequential hallucinations in tested datasets. We also concretely demonstrate the model's ability to reveal disease-associated metabolic changes that would otherwise remain undetectable. Furthermore, we provide physical insights into the model's inner workings, paving the way for future refinements that could potentially reveal novel high resolution features in an explainable manner. All methods are available as open-source software on GitHub.