Mixformer

Looped Transformers have recently demonstrated strong performance in both reasoning and language tasks by reusing a shared set of parameters across multiple iterations, achieving parameter efficiency without sacrificing representational power. Besides, looped Transformers perform inference directly in the latent space (latent reasoning) to reduce the number of tokens consumed during inference, thereby achieving improved sample efficiency. However, these models typically apply a fixed recursion depth uniformly to every token, leading to suboptimal compute allocation and leaving significant efficiency gains on the table. In this work, we propose \textbf{dynamic token-choice routing} for looped transformers, enabling each token to adaptively determine its own number of loop iterations based on its hidden state. We use a dynamic router to decide whether a token should continue recursing or exit early, allowing simple tokens to bypass unnecessary computation while hard tokens receive deeper processing. To ensure that this adaptive mechanism does not compromise decoding efficiency, we further introduce recursion-wise KV caching, which maintains an independent key-value cache for each recursion loop. This design ensures that tokens at different depths only attend to their corresponding cached states, effectively eliminating redundant computations for exited tokens and enabling fast autoregressive decoding. Extensive experiments show that T-LoopFormer reaches the sota performance under the same parameters on PPL and 10 zero-shot reasoning tasks, even surpassing the base model at 24x FLOPs and our model could reach the lowest inference latency, which validate the effectiveness of token-choice router and recursion-wise KV cache. Code: https://github.com/YuMingQian1234/T-LoopFormer.

Semantic segmentation on very-high-resolution images remains challenging due to the high computational cost and the difficulty of capturing fine-grained details. We propose CoordFormer, a novel coordinate-based architecture for semantic segmentation that predicts labels at arbitrary spatial locations through a Coordinate Decoder equipped with a Localized Cross-Attention mechanism. The decoder combines coordinate embeddings with high-resolution local patch features and interacts with global tokens extracted from a downsampled image processed by a ViT foundation encoder, enabling rich semantic context while preserving pixel-level precision. This design enables flexible inference at arbitrary resolutions while keeping memory low on very-high-resolution inputs, and supports an efficient semantic-edge-focused strategy that concentrates computation along boundaries, maintaining fine-grained accuracy while reducing latency and computational cost. CoordFormer achieves state-of-the-art performance on MaSS13K and outperforms comparably sized and higher-parameter methods on DIS5K and KPIs, demonstrating its effectiveness for high-quality, very-high-resolution semantic segmentation.

Transformer-based methods have achieved strong performance in monocular 3D human pose estimation, but most existing approaches organise spatial and temporal reasoning as separate stages, which may weaken unified spatial-temporal interdependencies inherent in human motion and compress frame-level structural information before temporal modelling. In this paper, we propose HSTGFormer, a graph-enhanced Transformer framework that reformulates spatial-temporal reasoning as localised coupled graph aggregation over joint-time nodes. Specifically, HSTGFormer introduces a Hyper Spatial-Temporal Graph (HSTG), which decomposes global spatial-temporal reasoning into local spatial-temporal receptive fields around individual joint-time nodes by extending per-frame skeleton graphs into temporal neighbourhoods, thereby enabling structure-aware coupled reasoning while preserving local structural motion information. It further incorporates an Adaptive Dual-Scale Temporal Graph (ADSTG) to capture joint-specific temporal dependencies over complementary short- and long-range windows. A lightweight node-wise fusion module further adaptively integrates the two graph representations for each joint-time node. Experiments on Human3.6M and MPI-INF-3DHP show that HSTGFormer achieves strong accuracy with high computational efficiency.

State Space Models (SSMs), as a mainstream research direction of linear Transformers, aim to achieve higher efficiency than standard Transformers in long-context modeling. However, existing SSMs suffer from limited input adaptivity and constrained memory capacity, leading to information loss when modeling ultra-long sequences. To address these limitations, we propose MixFormer, a novel linear Transformer that integrates a Mixture-of-Memory-Experts (MoE) mechanism. Specifically, the model maintains differentiated memory states through multiple collaborating memory experts and employs a novel Time-Aware Linear Attention (TALA) mechanism, which leverages learnable exponential decay functions and positional biases to dynamically update memory. This design enables the model to selectively reinforce important historical information while effectively mitigating memory dilution, substantially improving long-range dependency modeling. Experiments on long-sequence text and image generation tasks demonstrate that MixFormer not only achieves significant performance gains but also provides a more sustainable computational backbone for the next generation of web infrastructure.

Structured input files such as JSON, DOT, OBJ, INI, S-expression, and TinyC are widely used in software systems, but small corruptions can cause parsers to reject otherwise useful data. Repairing such inputs is important because malformed configuration, program, and data files can interrupt testing, analysis, deployment, and downstream automation even when most of the original content remains intact. Existing repair techniques can produce structurally valid inputs, but they often rely on deletion or repeated search, which may lose original content and result in semantic incorrectness. This paper presents RepairFormer, a transformer-based framework for structured input repair. The approach formulates repair as a supervised sequence generation task and uses format tags, oracle validation, and boundary-localized repair to generate valid outputs while preserving content. The boundary workflow focuses generation on the detected fault region, reducing the input size, and supporting repair of longer files. In evaluation, RepairFormer achieves a 88% in repair and 94% in recovery, showing strongest content preservation when repairs are successful. Additional experiments on our benchmark shows RepairFormer repairs 97.57% and recovers 94.29% with 5x faster runtime compared to state of the art.

Vision Transformers (ViTs) increasingly rely on input-adaptive inference, such as token pruning and early halting, to meet energy and latency budgets. This survey examines a recent class of adversarial efficiency degradation attacks that target these mechanisms to increase computation without necessarily degrading accuracy. We unify and compare two representative attacks, SlowFormer (a universal adversarial patch) and DeSparsify (per-image perturbations), across three popular token-pruning frameworks: A-ViT, ATS, and AdaViT. We standardize reporting using GFLOPs, accuracy loss, and an Attack Success (AS) metric that measures how much of the model's compute savings the attack takes away. Understanding these attacks is crucial for designing countermeasures that not only mitigate risk but also remain lightweight, since deployment often occurs in low-power settings such as mobile or embedded devices. To organize our analysis, we focus on three questions: how input-adaptive optimizations (e.g., token pruning and early halting) create attack surfaces for efficiency degradation; how such attacks operate in practice and which optimizations are most vulnerable; and which defenses exist today and whether they meaningfully restore efficiency under attack.

Frozen pretrained forecasters often fail in structured, recurring ways that are costly to repair through fine-tuning. We study corrective feature discovery: mining interpretable features of a frozen forecaster's residual to drive a lightweight post-hoc corrector. Prior automated feature engineering models the data-generating process; corrective features instead model the model-failure process. We present CRAFTER (Corrective Residual Agent with Feature-based Temporal Exploration and Reasoning), which keeps the backbone frozen and mines its residual with two complementary generators: a compositional search over the raw input channels, and a large language model (LLM) that proposes named feature combinations, binary flags, and short executable code. A single validation-grounded gate accepts or rejects every candidate regardless of its origin, and a validation-selected corrector applies the accepted features or leaves the forecast unchanged. This source-agnostic pipeline also allows prior feature-engineering systems to be evaluated under identical conditions, making CRAFTER an instrument for attributing forecast improvements to the feature source alone. Across six public datasets and six frozen backbones, CRAFTER surpasses every dedicated feature-engineering system at every feature budget, roughly doubling the improvement achieved by the corrector alone and reducing the error of the weakest backbones by up to 27%. These gains are robust across different LLM backends and persist even when applied on top of fine-tuned backbones.

Pose-agnostic Anomaly Detection (PAD) remains challenging as anomalies can appear under arbitrary viewpoints, requiring methods to handle significant pose variations. Existing approaches rely on complex 3D reconstruction, which are computationally expensive and require extensive multi-view data. We propose PADFormer, a novel image-space approach that leverages Vision Transformer (ViT) to directly reconstruct anomaly-free versions of query images while preserving pose information. Our key insight is to adapt cross-view masked reconstruction for anomaly detection through training exclusively on normal data, combined with dynamic patch selection and spatial alignment mechanisms that enable effective learning from sparse reference views under significant pose variations. During inference, we perform multiple forward passes with different masking patterns to generate an ensemble of anomaly-free reconstructions, ensuring comprehensive coverage of the query image. Anomalies are detected by comparing these reconstructions with the query image. PADFormer achieves state-of-the-art results on the PAD benchmark while maintaining comparable performance on classic few-shot anomaly detection (FSAD) tasks, demonstrating superior efficiency and generalization without requiring 3D reconstruction.

Camera-based bird's-eye-view (BEV) 3D detection typically assumes accurate and fixed camera extrinsics. In detectors using spatial cross-attention (SCA), extrinsic perturbations displace the image-plane projections of BEV reference points, causing queries to sample features from incorrect regions and degrading detection performance. To address this failure mode, Noise-Conditional Gated Rectification (NCGR) is proposed to compensate for projection errors without explicitly estimating a full six-degree-of-freedom extrinsic correction. For each query-camera pair, a 2D rectification offset is predicted and modulated by a camera-level gate to rectify the base projection before native deformable sampling. During training, the perturbation-derived quantities used to construct the condition and gate are gradually replaced through scheduled interpolation by counterparts generated from an auxiliary scalar predicted from camera features. This transition enables blind inference without perturbation metadata. During training, a weight-shared clean-teacher/perturbed-student pair is used, and the rectification module is supervised by a BEV-consistency objective between the two branches. NCGR is evaluated on nuScenes with simulated dynamic and static extrinsic perturbations. In a five-camera dynamic stress test, NCGR achieves 39.69% NDS, compared with 28.00% for BEVFormer and 33.23% for CAPE. Under clean extrinsics, NCGR maintains performance comparable to that of BEVFormer.

Vision-Language-Action (VLA) policies trained by behavior cloning fail silently: from the action stream alone, a collapsing rollout looks much like one making clean progress, because imitation supplies no notion of progress. Reinforcement learning would supply one, but it is impractical here, where real-robot experience is costly and deformable food resists simulation. The cheap alternative, a terminal success / failure bit, is learnable in principle yet far too sparse to say when a rollout went wrong. We argue that the per-frame label, not the architecture, is the hard part: to be useful it must be dense, continuous, and correctly shaped. We present ValueFormer, a compact policy-agnostic causal transformer over a frozen DINOv3 backbone that emits two per-frame signals in one forward pass: a smooth Monte Carlo value, V_mc, for advantage estimation and a sharp binary value for online mistake detection, targets that pull in opposite directions by design. Failed episodes are labeled with a stage-aware, success-then-decay return that preserves the success curve before the failure stage, and detection is supervised from mistake intervals rather than a single failure time, so mistakes the policy recovers from also carry signal. On a real-robot bimanual sandwich-assembly task 1,427 episodes), a critic-derived per-frame training weight lifts task completion from 70% to 85% (within noise at n=20), and a batched bf16 encoder cuts the live serving cost 3~5 times so the critic runs at 2 Hz alongside the policy on a single GPU.

Large-scale multivariate time series from heterogeneous IoT sensors demand accurate long-term forecasting for resource scheduling and predictive maintenance. While recent time series foundation models exhibit strong generalization, they rely on static parametric knowledge and lack dynamic access to external historical patterns during inference. Retrieval-Augmented Generation (RAG) offers a potential remedy, yet its application to time series forecasting is challenged by magnitude variations across heterogeneous sources and the mismatch between historical similarity and future consistency. We propose CrossRAG, a retrieval-augmented forecasting framework that integrates Shape-Aware Memory (SAM) with RevIN normalization for magnitude-robust shape-level retrieval, Future-Consistent Contrastive (FCC) learning to distinguish informative references from hard negatives with similar history but divergent futures, and Cross-Attention Temporal Fusion (CATF) to fuse retrieved historical--future reference pairs into the backbone's representations at the representation level. Experiments on seven public benchmarks show that CrossRAG consistently outperforms both parametric-only baselines and existing retrieval-augmented forecasting methods.

Forecasting multiple time-series with high-dimensional covariates presents a core challenge: unifying common temporal patterns while retaining meaningful series-specific information. We introduce Hopformer (Homogeneity-Pursuit Transformer), a two-stage framework that addresses this challenge. In the first stage, we perform a Sparsity Pattern Aggregation (SPA) scheme extracting a common low-variance trend that incorporates the covariates. This acts as a homogenization layer. In the second stage, a LoRA-fine-tuned Transformer models the remaining complex dependencies in the residual. Our method is theoretically grounded. We prove that SPA achieves a near-optimal bias-variance trade-off via an oracle inequality. We also provide generalization bounds for the second stage under dependent time series data. Hopformer sets a new state of the art, improving MASE by an average of 6.56% across synthetic and real-world forecasting benchmarks.

Attention Mechanism (AM) selectively focuses on essential information for imaging tasks and captures relationships between distant pixel neighborhoods to compute feature representations. Accelerated MRI reconstruction benefits from AM, as the imaging process involves Fourier domain measurements that influence image representation non-locally. However, AM-based models are more adept at capturing low-frequency information with limited capacity for high-frequency representations, restricting models to smooth reconstruction. Additionally, AM-based models need mode-specific retraining for multimodal MRI data, as their knowledge is restricted to local contextual variations that may be inadequate to capture transferable features across heterogeneous domains. To address these challenges, we propose a neuromodulation-based discriminative multi-spectral AM for scalable MRI reconstruction that can (i) propagate context-aware high-frequency details for high-quality reconstruction, and (ii) capture features reusable across deviated unseen domains in multimodal MRI. The proposed network consists of a spectral filtering CNN to capture mode-specific transferable features and a dynamic high-pass kernel generation transformer focusing on high-frequency details. We evaluate our model on comparative studies in supervised and self-supervised learning, diffusion model-based training, closed-set and open-set generalization under heterogeneous MRI data, and interpretation-based analysis. Our method offers scalable, high-quality reconstruction with best improvement margins of ~1 dB in PSNR and ~0.01 in SSIM under unseen scenarios. Code: https://github.com/sriprabhar/SHFormer

Action supervision in vision-language-action (VLA) models is often treated as a downstream objective for learning action prediction. In this paper, we study it instead as a force that shapes inherited multimodal representations. We show that this shaping has a dual effect: it is necessary for forming action-compatible representations, but when action supervision is applied too directly to the inherited multimodal pathway, it can also destabilize representations that support language-side processing and object grounding. To address this tension, we introduce Action QFormer, a query-based action-facing interface that uses instruction-conditioned queries to reorganize inherited multimodal information into action-facing representations before downstream action generation. In zero-shot sim-to-real navigation, Action QFormer improves average closed-loop task success from 18.8% to 56.3%, raises fixed-instruction action-generation correctness from 22.5% to 75.5%, and nearly eliminates out-of-distribution instruction generations. Further analyses show that Action QFormer changes how action supervision shapes inherited multimodal representations, reducing broad upstream rewriting while preserving targeted and sometimes constructive action-supervised adaptation. These results suggest that improving VLA performance requires not only stronger pretrained backbones, but also better ways of selecting and organizing inherited multimodal information while controlling how it is shaped under action supervision.

Accurate station-level demand forecasting is essential for the efficient operation of bike-sharing systems, yet it remains challenging due to complex spatio-temporal dependencies and the large scale of urban networks. This paper presents STAGformer, a Spatio-Temporal Agent Graph Transformer that achieves efficient global modeling with linear computational complexity. The model introduces a two-step agent attention mechanism, where a small set of learnable spatial and temporal agent tokens first aggregate global information and then broadcast it back to individual stations and time steps, effectively capturing long-range interactions while reducing the quadratic cost of standard self-attention to O(NT). STAGformer integrates four core modules: a spatio-temporal encoder that fuses dynamic node features with external contextual factors (weather, time, points of interest), a graph propagation module for spatial neighbor aggregation, a temporal convolution module for local pattern extraction, and the agent attention module for global dependency modeling. Extensive experiments on two real-world datasets -- NYC Citi-Bike and Chicago Divvy-Bike -- demonstrate that STAGformer consistently outperforms state-of-the-art baselines across multiple prediction horizons, achieving significant improvements in both RMSE and MAE. Ablation studies validate the contribution of each component, with the agent attention mechanism proving critical for modeling global spatio-temporal dependencies.

Time series forecasting remains challenging when the underlying data contain rare but critical extreme events. This issue is particularly important in hydrologic forecasting, where streamflow distributions are often highly skewed and extreme peaks can have substantial impacts on flood monitoring, water resource management, and early warning systems. Although Transformer-based forecasting models have achieved strong performance by modeling long-range temporal dependencies, they typically treat all time points uniformly and may therefore underrepresent rare extreme patterns. In this paper, we propose the Extreme-Adaptive Transformer (Exformer), a forecasting framework designed to explicitly model temporal dependencies involving both normal and extreme events. Exformer introduces an extreme-adaptive attention mechanism composed of three sparse components: Local, Stride, and Extreme. The Local and Stride components capture short-term and periodic temporal dependencies, respectively, while the Extreme component selectively models event-aware dependencies between normal and extreme streamflow patterns. Experiments on four real-world hydrologic streamflow datasets show that Exformer achieves superior 3-day forecasting performance compared with state-of-the-art baselines. Our findings demonstrate that explicitly incorporating extreme-aware attention improves the forecasting capacity of Transformer models on imbalanced time series with rare but consequential events.

Estimating accurate 3D hand-object pose from in-the-wild egocentric RGB remains challenging due to severe occlusions and ambiguous contact. Existing learning-based methods often struggle to generalise to in-the-wild scenes and are limited by the scarcity of supervision. We address these issues with two contributions. First, we introduce EPIC-Contact, an in-the-wild egocentric dataset of 2.3K clips (62.3K frames) with dense, bijective 3D hand-object contact correspondences and posed meshes. Second, we propose HOPformer, an end-to-end transformer that jointly predicts bi-manual hand and object pose in a single forward pass. A cross-attention decoder conditions object features on hand priors, producing robust pose estimation. We test HOPformer on the in-lab 3D dataset, ARCTIC, as well as our newly introduced EPIC-Contact dataset. HOPformer reaches 82.4% success rate on ARCTIC (+6.2 pts over current SOTA). On EPIC-Contact, it nearly doubles the success rate while reducing contact deviation by 75%. EPIC-Contact, HOPformer code and checkpoints are released: https://sid2697.github.io/epic-contact.

We present RenderFormer++, a scalable and physically grounded feed-forward neural rendering framework for global illumination in mesh scenes. Existing Transformer-based neural rendering methods such as RenderFormer achieve promising cross-scene generalization, but suffer from limited physical consistency and poor scalability due to the quadratic attention complexity of triangle-level tokenization. To address these issues, we introduce Physics-Informed Transport Guidance (PITG), which embeds rendering-equation inductive biases into the attention mechanism and enforces transport consistency loss, enabling physically consistent light transport modeling. We further propose Hierarchical Object-Centric Tokenization (HOCT), which aggregates triangle-level features into compact object-level tokens via cross-attention with learnable queries, substantially reducing computational and memory costs while preserving geometric and radiometric information. Extensive experiments demonstrate that RenderFormer++ achieves scalable, stable, and generalizable feed-forward global illumination rendering across complex large-scale scenes with improved physical accuracy and efficiency over prior neural rendering methods.

Event cameras capture sparse brightness changes with high temporal resolution and high dynamic range, compensating for the deficiencies of the conventional RGB frames. However, previous multi-modal fusion techniques typically fail to handle the inherent heterogeneity between RGB frames and event streams, thus easily leading to noise amplification or redundant feature integration during cross-modal fusion. In this paper, we propose a Cross-Modal information inTeraction transFormer, coined as CMTFormer, which hierarchically integrates RGB and event information to achieve efficient and stable multimodal collaboration. Specifically, we design a shallow-to-deep information interaction scheme. In the shallow stage, we present the Shallow Alignment Module (SAM) to achieve an efficient fusion of RGB and event low-level features, which mitigates attribute disparities and prevents noisy information. In the middle stage, we devise the Cross-modal Enhancement Module (CEM) that utilizes texture and edge information to produce mutually reinforced middle-level features. In the deep stage, we present the Learnable Deep Fusion Module (LDFM) which performs high-level information aggregation through learnable weights, thus enabling the network to adaptively fuse RGB and event clues. A Spatial Prior Module is further designed to utilize global spatial information to enhance localization accuracy. Extensive experiments are conducted on two prevalent event-based object detection benchmarks, i.e., DSEC-Detection and PKU-DAVIS-SOD. Our CMTFormer consistently surpasses the detection counterparts in both uni-modal and multi-modal settings, strongly demonstrating the effectiveness of our paradigm. Codes will be available upon publication.

Transformer models rely on attention mechanism to capture long-range dependencies but suffer from quadratic complexity, limiting their scalability to long sequences. Kernel-based linear attention reduces this complexity but typically relies on fixed or weakly learnable kernels, restricting expressiveness and performance. In this work, we propose Flexformer, a flexible linear Transformer that learns attention kernels in a fully data-driven manner. Flexformer builds on random Fourier feature-based linear attention and treats spectral frequencies as trainable parameters, enabling the model to learn a broad family of attention kernels. We develop both stationary and nonstationary variants, with the latter offering strictly greater expressiveness. Extensive experiments on language modeling and sequence classification demonstrate that Flexformer consistently outperforms baselines. Moreover, Flexformer can be effectively distilled from pretrained Transformers to recover softmax attention and exhibits strong kernel transferability across domains, achieving both high efficiency and competitive performance on long-sequence tasks.

Deep Transformers are composed of uniformly stacked residual blocks, yet their deepest layers often add little value. We present two efficiency methods that exploit this asymmetry. CascadeFormer tapers width with depth to match the uneven information flow across layers, achieving comparable perplexity to a uniform baseline at the same training budget while reducing latency by 8.6% and increasing throughput by 9.4%. CascadeFlow Pruning removes layers using accumulated training gradients, with no post hoc analysis. It outperforms standard heuristics on perplexity and rank-stability and stays competitive on downstream accuracy. To motivate these methods, we propose Gradient Fan-in Asymmetry (GFA) as a structural account of why deeper layers contribute less. In Pre-LayerNorm residual stacks, the gradient at a layer is the sum of an identity path and all downstream functional paths, producing a gradient fan-in that decays linearly with depth (and quadratically under deep supervision), yielding richer gradients for early layers and sparser ones for later layers. We provide correlational and interventional evidence for GFA on models trained from scratch up to 1.2B parameters. Across Transformers and ResNets, accumulated training gradients follow the theoretical fan-in and are associated with post hoc layer importance. Two interventions point to structure rather than magnitude as the bottleneck: equalizing per-layer gradient norms does not restore late-layer value, while increasing downstream path counts via parameter-shared repetition restores and elevates it. Whether gradient magnitude proxies fan-in beyond high-rank regimes, and how these dynamics behave at the 100B+ scale, remain open questions.

Although deep learning-based methods can achieve high accuracy in automatic modulation recognition (AMR) tasks, their high computational cost makes it difficult to strike a balance between accuracy and power consumption, thereby limiting their application on resource-constrained platforms. Neuromorphic architectures that perform spike-driven inference with modest energy budgets have recently been explored for vision and timeseries tasks. Motivated by these works, we propose EMRFormer, a novel end-to-end spiking nerural network (SNN) architecture that applies spike-driven transformer to the constraints of neuromorphic hardware for AMR. The model incorporates an adaptive spike encoder and Integer Leaky Integrate-and-Fire neurons to mitigate the degradation of effective information and enhance SNN representational capacity. By integrating spike-separable Convolution Neural Networks (SSCNN) into Spike-Driven Transformers (SpikeFormer), EMRFormer effectively extracts multi-scale temporal features from the raw IQ waveforms. We validate our approach across various mainstream datasets, the experimental results show that EMRFormer achieves state-of-the-art interms of accuracy, outperforming all the baselines. Furthermore, the model maintains strong performance in low signal-to-noise(SNR) environments and reduces theoretical energy consumption by over 90%. Finally, we evaluate our model on a KA200 neuromorphic chip. The results show that our model achieves up to 5 times reduction in power compared to running on a 3090 GPU or an Orin NX. This work demonstrates a promising pathway for AMR on resource-constrained devices.

Monocular visual odometry (MVO) is foundational to autonomous navigation and robotic localization. However, existing learning-based MVO approaches often struggle with either a lack of interpretable, complementary features or overly complex multi-stage architectures. These limitations inherently restrict their robustness and cross-domain generalization. In this work, we propose MVOFormer, a novel transformer framework for robust monocular visual odometry. Our architecture features a Flow-Semantic Dual Branch Encoder that synergizes dense geometric motion cues with object-centric semantic priors, explicitly distinguishing static structures from dynamic distractors. These representations are then fused by an Iterative Multimodal Decoder, enabling coarse-to-fine pose refinement while dynamically suppressing attention on unreliable regions. Extensive evaluations demonstrate that, without any target-domain fine-tuning, MVOFormer achieves superior zero-shot generalization and robustness, significantly outperforming prior learning-based frame-to-frame methods across diverse benchmarks including TartanAir, KITTI, TUM-RGBD, and ETH3D-SLAM.

AthDGC ("Athens-PROIEL") is an open, end-to-end workflow and dataset. It is, to the best of our knowledge, the first openly licensed dependency-parsed treebank of Greek that spans eight diachronic periods, namely Archaic, Classical, Koine, Late Antique, Byzantine, Late Byzantine, Early Modern, and Modern Greek, under a single PROIEL XML 2.0 schema, with verse-level cross-alignment of the New Testament to Latin (Vulgate), Gothic (Wulfila), Old Church Slavonic (Marianus), and Classical Armenian. AthDGC builds on the PROIEL Treebank Family (Haug and Johndal 2008; Eckhoff et al. 2018), which established the schema and the Koine-Greek reference set for the project. Annotation uses the Stanford Stanza PROIEL-trained workflow; sentence-level alignment uses LaBSE, a multilingual sentence-embedding model; word-level alignment uses multilingual-BERT attention through the AwesomeAlign procedure. The v0.4 release provides curated samples and the open-source toolkit; the full annotated corpus partitions remain under v0.5 audit on the Greek national HPC. Quantitative scale, per-witness verse counts, and per-period annotated-row counts are reported in the v0.5 release notes, after the audit pass completes. Concept DOI: 10.5281/zenodo.20439182.

Auditory attention decoding (AAD) aims to infer the attended speaker from neural responses in multi-speaker acoustic environments and is a key problem for neuro-steered hearing systems. Although recent studies have achieved encouraging progress, existing AAD models still do not fully exploit frequency domain electroencephalography (EEG) information. In particular, most approaches introduce multi-band information through handcrafted feature extraction or direct cross-band feature concatenation, which mainly exploit frequency information at a shallow level and may overlook band-specific patterns and cross-band interactions. To address these limitations, this paper proposes FAConformer, a frequency-aware CNN-Transformer framework for AAD that explicitly integrates band-specific encoding and adaptive cross-band interaction. Specifically, FAConformer first decomposes EEG signals into multiple frequency bands and assigns each band to an independent CNN-Transformer encoder for band-specific modeling. The resulting band-wise features are then adaptively fused by a carefully designed frequency-aware attention (FAA) module that models cross-band dependencies by treating band-wise features as tokens. Further, band-wise auxiliary supervision (BAS) is introduced to prevent weakly contributing branches from being under-optimized during joint training. In this way, FAConformer performs frequency-aware modeling that more effectively exploits frequency domain information. Extensive experiments on two public AAD datasets with three decision-window lengths demonstrated that FAConformer consistently outperformed 12 competitive baselines, surpassing the current state-of-the-art model by 4.9%. Further analyses of band importance, ablation, and parameter sensitivity verify the effectiveness, robustness, and interpretability of the proposed framework. Code is available at https://github.com/wzwvv/FAConformer.

Sow body condition is an important indicator for growers as it has a large impact on lactation performance and piglet survival. However, body condition measures used during production, such as visual scoring and calipers, correlate poorly with underlying tissue composition. Ultrasound scans can provide direct measurements of subcutaneous backfat thickness and loin muscle depth, but their operation is labor intensive and not scalable for production. We present PigFormer, an end-to-end two-stage system that takes raw depth frames from a ceiling-mounted RGB-D camera and predicts subcutaneous backfat thickness, loin muscle depth, and total tissue thickness at the last rib. Stage 1 is a geometric front-end that converts raw depth into a standardized height map via SAM3-to-MaskDINO segmentation distillation, ground-plane removal, and orientation normalization. Stage 2 is a Slice Attention Encoder that treats each height map as a sequence of cross-sectional slices and captures spatial relationships along the full dorsal surface. On a multi-site dataset of 319 sow and gilt instances from two facilities, PigFormer achieves 2.43 mm backfat MAE and 3.87 mm overall MAE. It outperforms strong single-stage ResNet-18 and ViT-small baselines. PigFormer offers a practical path toward continuous, automated, non-contact body condition monitoring in commercial swine production. Code is available at https://github.com/iambashar/Pigformer.

Approximately 10% of newborns require assistance to initiate breathing at birth, and around 5% need ventilation support. Fetal heart rate (FHR) monitoring plays a crucial role in assessing fetal well-being during prenatal care, enabling the detection of abnormal patterns and supporting timely obstetric interventions to mitigate fetal risks during labor. Applying artificial intelligence (AI) methods to analyze large datasets of continuous FHR monitoring episodes with diverse outcomes may offer novel insights into predicting the risk of needing breathing assistance or interventions. Recent advances in wearable FHR monitors have enabled continuous fetal monitoring without compromising maternal mobility. However, sensor displacement during maternal movement, as well as changes in fetal or maternal position, often lead to signal dropout, resulting in gaps in recorded FHR data. Such missing data limits the extraction of meaningful insights and complicates automated (AI-based) analysis. Traditional approaches to handling missing data, such as simple interpolation techniques, often fail to preserve the spectral characteristics of the signals. In this paper, we propose a masked transformer-based autoencoder approach to reconstruct missing FHR signals by capturing both local temporal and frequency components of the data. The proposed method demonstrates robustness across varying durations of missing data and can be used for signal inpainting and forecasting. The proposed approach can be applied retrospectively to research datasets to support the development of AI-based risk algorithms. In the future, the proposed method could be integrated into wearable FHR monitoring devices to achieve earlier and more robust risk detection.

This paper presents the HRVConformer, a novel deep learning architecture for the classification of hypoxic-ischemic encephalopathy (HIE) using the instantaneous heart rate (HR) signal. Unlike conventional approaches that rely on handcrafted features, HRVConformer directly processes raw HR signals in an end-to-end manner, capturing both local and long-range dependencies through a hybrid Convolution-Transformer framework. By integrating convolutional layers for local feature extraction and Transformer-based attention mechanisms for global context modelling, the architecture effectively enhances signal representation and classification performance. The model was trained using supervised learning on a large HR dataset consisting of 1,573 one-hour epochs, including 259 one-hour expert-annotated epochs and a substantial set of weakly labelled data. A 314-hour validation set provided a robust performance estimation, while an independent 215-hour dataset with expert annotations was reserved for final testing. HR signals were extracted from electrocardiogram (ECG) recordings using an improved Pan-Tompkins algorithm, which significantly enhanced both signal quality and data availability. Experimental results demonstrate that the HRVConformer achieves an AUC of 83.23% and accuracy of 74.56% on the test set. These results surpass the performance of the Transformer, ResNet50 and fully convolutional networks baselines, highlighting the advantages of integrating convolutional and Transformer-based components for HR-based HIE classification. The proposed method provides a promising step toward a more accurate and automated assessment of HIE using HR signals. The code is available at: https://github.com/syu-kylin/HRVConformer.

Cross-subject generalization in biomedical time-series refers to training on data from some subjects and testing on unseen subjects.The key challenge is to suppress subject specific variability in BTS representations.Most existing methods implicitly suppress the variability through model building or subject adversarial learning, but rarely model it explicitly.We introduce spectral drift as a new perspective to characterize subject specific variability.Specifically, BTS signals under the same label often share consistent oscillatory structure, yet exhibit subject-dependent magnitude or phase shifts in specific frequency components, which we interpret as subject-specific variability. Building on this insight, we propose BioFormer.At its core is a Frequency-Band Alignment Module(FBAM) that generates band-wise modulation factors from the spectral distribution and adaptively adjusts amplitude and phase to align spectral structure, thereby mitigating variability.We further pair FBAM with Sample Conditional Layer Normalization, which infers normalization parameters from intrinsic signal statistics rather than subject identity, stabilizing cross-subject representations.Extensive experiments on six datasets demonstrate that BioFormer outperforms 12 baselines, yielding absolute F1-score improvements of 6%.

Inference from interaction maps, such as centromere identification from genome-wide chromosome conformation capture techniques -- notably Hi-C -- can be formulated as a generic inverse problem: infer a set of parameters given a map summarizing pairwise interactions between entities through blocks of variable numbers and sizes. In this work, we introduce a data-driven approach that leverages shared structure between these maps, such as global alignment between localized patterns, while handling the variability in number and size of entities arising in real-world data. Our approach relies on a transformer architecture capable of handling such variability and a custom simulator to generate abundant, yet computationally cheap synthetic data for training. Applied to the problem of centromere localization, the method accurately recovers their genomic positions across a wide range of species of various genome sizes.

Precise measurement of the kinematic Sunyaev-Zel'dovich (kSZ) effect - a probe of the large-scale distribution of baryonic matter, a key observable for cosmological inference - requires accurate reconstruction of galaxy velocities from spectroscopic surveys. The signal-to-noise ratio (SNR) of kSZ measurements scales directly with the correlation coefficient $r$ between reconstructed and true velocities. We introduce Velocityformer, an equivariant graph transformer architecture designed to match the specific symmetry of the observational data. While the underlying physics is equivariant with respect to translations and rotations, observational effects break this symmetry due to the preferred line-of-sight direction. Matching the model's inductive bias to the data's broken symmetry consistently improves performance across all model sizes and training volumes, with Velocityformer improving $r$ by 35% over the standard linear theory baseline and outperforming ML baselines at every data volume. By matching the model's inductive bias to the data and conditioning on the physics-based long-wavelength solution, Velocityformer is highly data-efficient, training to high accuracy on as few as 4 low-fidelity simulations, and generalises zero-shot across input geometry, cosmological parameters, and galaxy sample. On high-fidelity simulated galaxy catalogues, this yields a 30% improvement in $r$ over the physical baseline, directly translating to the same SNR gain on observational data.

Modern vision backbones treat pointwise activations (e.g., ReLU, GELU) and exponential softmax as essential sources of nonlinearity, but we demonstrate they are not required within MetaFormer-style vision backbones. We design activation-free polynomial alternatives for three core primitives (MLPs, convolutions, and attention), where Hadamard products replace standard nonlinearities to yield polynomial functions of the input. These modules integrate seamlessly into existing architectures: instantiated within MetaFormer, a modular framework for vision backbones, our PolyNeXt models match or exceed activation-based counterparts across model scales on ImageNet classification, ADE20K semantic segmentation, and out-of-distribution robustness. We also substantially outperform prior polynomial networks at reduced computational cost, showing that polynomial variants of standard modules beat complex custom architectures.

Multivariate time-series analysis involves extracting informative representations from sequences of multiple interdependent variables, supporting tasks such as forecasting, imputation, and anomaly detection. In real-world scenarios, these variables are typically collected from a shared context or underlying phenomenon, suggesting the presence of latent dependencies across time and channels that can be leveraged to improve performance. However, recent findings show that channel-independent (CI) models, which assume no inter-variable dependencies, often outperform channel-dependent (CD) models that explicitly model such relationships. This surprising result indicates that current CD models may not fully exploit their potential due to limitations in how dependencies are captured. Recent studies have revisited channel dependence modeling with various approaches; however, these methods often employ indirect modeling strategies, which can lead to meaningful dependencies being overlooked. To address this issue, we introduce XCTFormer, a transformer-based channel-dependent (CD) model that explicitly captures cross-temporal and cross-channel dependencies via an enhanced attention mechanism. The model operates in a token-to-token fashion, modeling pairwise dependencies between every pair of tokens across time and channels. The architecture comprises (i) a data processing module, (ii) a novel Cross-Relational Attention Block (CRAB) that increases capacity and expressiveness, and (iii) an optional Dependency Compression Plugin (DeCoP) that improves scalability. Through extensive experiments on three time-series benchmarks, we show that XCTFormer achieves strong results compared to widely recognized baselines; in particular, it attains state-of-the-art performance on the imputation task, outperforming the second-best method by an average of 20.8% in MSE and 15.3% in MAE.

Traditional sheet metal forming relies on time-consuming and expensive Finite Element Analysis (FEA) for design validation, a process that significantly prolongs design cycles. While surrogate models offer faster iteration, current approaches have limitations: scalar-based methods cannot capture comprehensive field-based FEA results, while existing image-based models often ignore the critical role of material properties by focusing solely on geometry. To address this gap, we develop a physics-guided deep learning framework, namely StampFormer, which simultaneously uses component geometry and material stress-strain responses to predict FEA outcomes. The StampFormer framework uses three core components to process data. A Material-Augmented Geometric Network (MAGN) first fuses geometric and material data. This information is then integrated at various levels by a Hierarchical Material Embedding Injection Unit (HMEIU) before being processed by the primary network backbone, an adapted Swin-UNet. We evaluated our model on the stamping of a crossmember panel with two simulation datasets for steel and aluminium panels, and results demonstrate that StampFormer provides high-fidelity predictions of critical physical fields - including thinning, major strain, minor strain, plastic strain, and displacement - in under a second. Compared with ground truth FEA, our model achieved an average relative error of less than 8.5% on the four 2D fields and a mean squared error of less than 1.2 mm2 for the 3D displacement field. In summary, we introduce a practical and efficient framework that integrates multimodal information, namely geometry and material properties, to provide fast and accurate predictions, enabling designers to perform real-time manufacturability assessments.

We present a new class of efficient attention mechanisms applying universal 3D Relative Positional Encoding (RPE) methods given by arbitrary integrable modulation functions $f$. They lead to the new class of 3D-Transformer models, called \textit{RelFlexformers}, flexibly integrating those RPEs, and characterized by the $O(L \log L)$ time complexity of the attention computation for the $L$-length input sequences. RelFlexformers builds on the theory of the Non-Uniform Fourier Transform (NU-FFT), naturally generalizing several existing efficient RPE-attention methods from structured settings with tokens homogeneously embedded in unweighted grids into general non-structured heterogeneous scenarios, where tokens' positions are arbitrarily distributed in the corresponding 3D spaces. As such, RelFlexformers can be applied in particular to model point clouds. Our extensive empirical evaluation on a large portfolio of 3D datasets confirms quality improvements provided by the NU-FFT-driven attention modulation techniques in the RelFlexformers.

Graph Neural Networks (GNN) and Transformer-based architectures have achieved remarkable progress in graph learning, yet they still struggle to capture both global structural dependencies and model the dynamic information propagation. In this paper, we propose CTQWformer, a hybrid graph learning framework that integrates continuous-time quantum walks (CTQW) with GNN. CTQWformer employs a trainable Hamiltonian that fuses graph topology and node features, enabling physically grounded modeling of quantum walk dynamics that captures rich and intricate graph structure information. The extracted CTQW-based representations are incorporated into two complementary modules:(i) a Graph Transformer module that embeds final-time propagation probabilities as structural biases in the self-attention mechanism, and (ii) a Graph Recurrent Module that captures temporal evolution patterns with bidirectional recurrent networks. Extensive experiments on benchmark graph classification datasets demonstrate that CTQWformer outperforms graph kernel and GNN-based methods, demonstrating the potential of integrating quantum dynamics into trainable deep learning frameworks for graph representation learning. To the best of our knowledge, CTQWformer is the first hybrid CTQW-based Transformer, integrating CTQW-derived structural bias with temporal evolution modeling to advance graph learning.

Building height (BH) and building footprint (BF) jointly describe the vertical and horizontal extent of the built environment and are required inputs for urban climate, disaster-risk, and population-mapping models. The two parameters are coupled through floor-area-ratio (FAR) constraints, yet remote-sensing approaches typically treat them as independent regression targets. We argue that explicitly encoding this cross-task coupling is more impactful than further refining individual encoders, and propose MorphoFormer, a joint BH/BF estimation framework built around two complementary mechanisms: (i) a BF-Guided Task Decoder (BGTD) that gates the height branch via cross-attention on a footprint-derived morphology context, and (ii) a Morphology Consistency Loss (MCL) that supervises a height-from-footprint surrogate against the ground-truth BH, indirectly forcing the BF feature to encode height-correlated structure. The encoder is a single-stage Swin backbone fed by Sentinel-1 SAR, Sentinel-2 multispectral, and DEM inputs, trained and evaluated on a geo-blocked split of 54 cities. Against a Swin-MTL baseline at identical receptive field, MorphoFormer reduces BH test RMSE from 3.39 to 3.15 m (R^2 improves 0.62 -> 0.67) with BF R^2 stable at 0.80. Controlled ablations at identical capacity attribute most of this 0.24 m improvement to the two proposed mechanisms: removing BGTD raises BH RMSE by 0.11 m and removing MCL raises it by 0.11 m, with the residual approximately 0.02 m falling within the noise floor of encoder-side variations. Because both mechanisms act on cross-task representations rather than pixels, the design carries no intrinsic dependence on input resolution.

Recognizing unknown objects is crucial for safety-critical applications such as autonomous driving and robotics. Open-Set Panoptic Segmentation (OPS) aims to segment known thing and stuff classes while identifying valid unknown objects as separate instances. Prior OPS approaches largely treat known categories as a flat label set, ignoring the semantic hierarchy that provides valuable structural priors for distinguishing unknown objects from in-distribution classes. In this work, we propose Hyp2Former, an end-to-end framework for OPS that does not require explicit modeling of unknowns during training, and instead learns hierarchical semantic similarities continuously in hyperbolic space. By explicitly encoding hierarchical relationships among known categories, the model learns a structured embedding space that captures multiple levels of semantic abstraction. As a result, unknown objects that cannot be confidently classified as known categories still remain in close proximity to higher-level concepts (e.g., an unknown animal remains closer to "animal" or "object" than to unrelated concepts such as "electronics" or "stuff") and can therefore be reliably detected, even if their fine-grained category was not represented during training. Empirical evaluations across multiple public datasets such as MS COCO, Cityscapes, and Lost&Found demonstrate that Hyp2Former outperforms existing methods on OPS, achieving the best balance between unknown object discovery and in-distribution robustness.

The integration of single-cell proteomic data is often hindered by the fragmented nature of targeted antibody panels. To address this limitation, we introduce scpFormer, a transformer-based foundation model designed for single-cell proteomics. Pre-trained on over 390 million cells, scpFormer replaces standard index-based tokenization with a continuous, sequence-anchored approach. By combining Evolutionary Scale Modeling (ESM) with value-aware expression embeddings, it dynamically maps variable panels into a shared semantic space without artificial discretization. We demonstrate that scpFormer generates global cell representations that perform competitively in large-scale batch integration and unsupervised clustering. Moreover, its open-vocabulary architecture facilitates in silico panel expansion, assisting in the reconstruction of biological manifolds in sparse clinical datasets. Finally, this learned protein co-expression logic is transferable to bulk-omics tasks, supporting applications like cancer drug response prediction. scpFormer provides a versatile, panel-agnostic framework to facilitate scalable biomarker discovery and precision oncology.

Scaling Transformers typically necessitates training larger models from scratch, as standard architectures struggle to expand without discarding learned representations. We identify the primary bottleneck in the attention mechanism's linear projections, which strictly confine feature extraction to fixed-dimensional subspaces, limiting both expressivity and incremental capacity. To address this, we introduce Nexusformer, which replaces linear $Q/K/V$ projections with a Nexus-Rank layer, a three-stage nonlinear mapping driven by dual activations in progressively higher dimensional spaces. This design overcomes the linearity constraint and enables lossless structured growth: new capacity can be injected along two axes via zero-initialized blocks that preserve pretrained knowledge. Experiments on language modeling and reasoning benchmarks demonstrate that Nexusformer matches Tokenformer's perplexity using up to 41.5% less training compute during progressive scaling (240M to 440M). Furthermore, our analysis of growth dynamics reveals that zero initialization induces a stable convergence trajectory, allowing us to derive a geometric scaling law that accurately predicts performance across expansion scales.

Models from the AlphaFold (AF) family reliably predict one dominant conformation for most well-ordered proteins but struggle to capture biologically relevant alternate states. Several efforts have focused on eliciting greater conformational variability through ad hoc inference-time perturbations of AF models or their inputs. Despite their progress, these approaches remain inefficient and fail to consistently recover major conformational modes. Here, we investigate both the optimal location and manner-of-operation for perturbing latent representations in the AF3 architecture. We distill our findings in ConforNets: channel-wise affine transforms of the pre-Pairformer pair latents. Unlike previous methods, ConforNets globally modulate AF3 representations, making them reusable across proteins. On unsupervised generation of alternate states, ConforNets achieve state-of-the-art success rates on all existing multi-state benchmarks. On the novel supervised task of conformational transfer, ConforNets trained on one source protein can induce a conserved conformational change across a protein family. Collectively, these results introduce a mechanism for conformational control in AF3-based models.

Plankton monitoring is essential for assessing aquatic ecosystems but is limited by the labor-intensive nature of manual microscopic analysis. Automating the segmentation of plankton from crowded images is crucial, however, it faces two major challenges: (i) the scarcity of pixel-level annotated datasets and (ii) the difficulty of distinguishing plankton from debris and overlapping individuals using conventional CNN-based methods. To address these issues, we propose PlankFormer, a novel framework for plankton instance segmentation. First, to overcome the data shortage, we introduce a method to generate labeled Pseudo Community Images (PCI) by synthesizing individual plankton images onto diverse backgrounds, including those created by generative models. Second, we propose a segmentation model utilizing a Vision Transformer (ViT) backbone with a Mask2Former decoder. To robustly capture the global structural features of plankton against occlusion and debris, we employ a Masked Autoencoder (MAE) for self-supervised pre-training on unlabeled individual images. Experimental results on real-world datasets demonstrate that our method significantly outperforms conventional methods, such as Mask R-CNN, particularly in challenging environments with high debris density. We demonstrate that our synthetic training strategy and MAE-based architecture enable high-precision segmentation with requiring less manual annotations for individual plankton images.

3D human pose estimation is a classic and important research direction in the field of computer vision. In recent years, Transformer-based methods have made significant progress in lifting 2D to 3D human pose estimation. However, these methods primarily focus on modeling global temporal and spatial relationships, neglecting local skeletal relationships and the information interaction between different channels. Therefore, we have proposed a novel method,the Dual-stream Spatio-temporal GCN-Transformer Network (MixTGFormer). This method models the spatial and temporal relationships of human skeletons simultaneously through two parallel channels, achieving effective fusion of global and local features. The core of MixTGFormer is composed of stacked Mixformers. Specifically, the Mixformer includes the Mixformer Block and the Squeeze-and-Excitation Layer ( SE Layer). It first extracts and fuses various information of human skeletons through two parallel Mixformer Blocks with different modes. Then, it further supplements the fused information through the SE Layer. The Mixformer Block integrates Graph Convolutional Networks (GCN) into the Transformer, enhancing both local and global information utilization. Additionally, we further implement its temporal and spatial forms to extract both spatial and temporal relationships. We extensively evaluated our model on two benchmark datasets (Human3.6M and MPI-INF-3DHP). The experimental results showed that, compared to other methods, our MixTGFormer achieved state-of-the-art results, with P1 errors of 37.6mm and 15.7mm on these datasets, respectively.

Panoramic dense-prediction models, spanning semantic segmentation and depth estimation, are typically trained under a strict gravity-aligned assumption. Real-world captures, however, routinely violate it: handheld devices jitter and aerial platforms change attitude, so the camera is rarely upright. Under such 3D reorientation, standard spherical Transformers overfit global latitude cues and collapse. We introduce SO3UFormer, an architecture that learns intrinsic spherical features largely decoupled from the underlying coordinate frame, through three geometric components: (1) removing absolute latitude encoding, which breaks the dependence on the gravity axis; (2) quadrature-consistent spherical attention, which corrects for non-uniform sampling density; and (3) a gauge-aware relative positional bias built from local tangent-plane angles rather than global axes. A logit-space \emph{SO(3)}-consistency regularizer, used only during training, further suppresses residual discretization effects. To benchmark robustness, we introduce Pose35, a variant of Stanford2D3D perturbed by random rotations within $\pm 35^\circ$, and evaluate under a full, arbitrary \emph{SO(3)} stress test. There, the baseline SphereUFormer collapses from 67.53 \emph{mIoU} on Pose35 to 25.26 under the full \emph{SO(3)} test, whereas SO3UFormer reaches 72.03 on Pose35 and retains 70.67 under the same test. Similarly, on a second real-world dataset (Matterport3D) for segmentation and on panoramic depth estimation, SO3UFormer remains essentially rotation-invariant while the gravity-anchored baseline again loses most of its accuracy. Code and models are available at https://github.com/zhuqinfeng1999/SO3UFormer.

While Time Series Foundation Models (TSFMs) excel in zero-shot tasks, their behavior under continual fine tuning is poorly understood. We present the first systematic study of catastrophic forgetting in TSFMs (TimesFM-2.0, Chronos-2) versus a specialized SamFormer model across synthetic and real-world energy forecasting benchmarks. Our results show that while fine-tuning improves new task accuracy, it consistently triggers forgetting, though larger models exhibit greater inherent robustness. Notably, employing forgetting mitigation techniques such as DER, levels the playing field: it provides disproportionate gains to smaller models, allowing them to match TSFM performance by the end of the continual learning sequence. These findings suggest that in realistic, non-stationary scenarios, the high computational cost of large foundation models may not be justified over smaller models equipped with effective mitigation strategies.

Learning from multi-variate time-series with heterogeneous channel configurations remains a fundamental challenge for deep neural networks, particularly in clinical domains such as intracranial electroencephalography (iEEG), where channel setups vary widely across subjects. In this work, we introduce multi-variate parallel attention (MVPA), a novel self-attention mechanism that disentangles content, temporal, and spatial attention, enabling flexible, generalizable, and efficient modeling of time-series data with varying channel counts and configurations. We use MVPA to build MVPFormer, a generative foundation model for human electrophysiology, trained to predict the evolution of iEEG signals across subjects. To support this and future efforts by the community, we release the SWEC iEEG dataset, the largest publicly available iEEG dataset to date, comprising nearly 10,000 hours of recordings from heterogeneous clinical sources. MVPFormer leverages MVPA to achieve strong generalization across subjects, demonstrating expert-level performance in several iEEG tasks. MVPFormer surpasses state-of-the-art (SOTA) Transformer baselines in seizure detection across the SWEC, the MAYO, and the FNUSA datasets, while also achieving SOTA performance on four Brain TreeBank iEEG decoding tasks (volume, pitch, onset, and speech). We further validate MVPA on standard time-series forecasting and classification tasks, where it matches or exceeds the performance of existing attention-based models. Together, our contributions establish MVPA as a general-purpose attention mechanism for heterogeneous time-series and MVPFormer as the first open-source, open-weights, and open-data iEEG foundation model with SOTA clinical performance. The code is available at https://github.com/IBM/multi-variate-parallel-transformer. The SWEC iEEG dataset is available at https://huggingface.co/datasets/NeuroTec/SWEC_iEEG_Dataset.

Transformer-based models have made remarkable progress in image restoration (IR) tasks. However, the quadratic complexity of self-attention in Transformer hinders its applicability to high-resolution images. Existing methods mitigate this issue with sparse or window-based attention, yet inherently limit global context modeling. Linear attention, a variant of softmax attention, demonstrates promise in global context modeling while maintaining linear complexity, offering a potential solution to the above challenge. Despite its efficiency benefits, vanilla linear attention suffers from a significant performance drop in IR, largely due to the low-rank nature of its attention map. To counter this, we propose Rank Enhanced Linear Attention (RELA), a simple yet effective method that enriches feature representations by integrating a lightweight depthwise convolution. Building upon RELA, we propose an efficient and effective Vision Transformer, named LAformer. LAformer eliminates hardware-inefficient operations such as softmax and window shifting, enabling efficient processing of high-resolution images. Extensive experiments across 7 IR tasks and 21 benchmarks demonstrate that LAformer outperforms SOTA methods and offers significant computational advantages. Furthermore, we extend LAformer to diffusion-based and flow-based visual generation, showcasing its strong potential as a competitive alternative to DiT and SiT. Code and models are available at https://github.com/shallowdream204/LAformer.