Masked Autoencoders

Deploying object-centric models for real-world scene understanding typically requires complex pipelines to achieve both robust scene decomposition and high-fidelity generation. Recent diffusion-based approaches have improved visual quality, but they almost universally rely on heavy, pretrained generative priors (e.g., Stable Diffusion) and external VAE latent spaces. In this paper, we propose Slot-RAE, a much simpler, fully integrated framework that operates directly within the continuous semantic feature space of visual foundation models (e.g., DINOv3). Slot-RAE employs a feature-space diffusion process using a Diffusion Transformer (DiT) decoder and a Representation Alignment (REPA) head. Unlike existing diffusion-based objectcentric methods that rely heavily on subsidized text-toimage priors, the generative core of Slot-RAE (Slot Attention and the DiT) is trained from scratch within the frozen VFM feature space. This eliminates the need for VAE bottlenecks and task-agnostic generative pre-training. Experiments on the COCO dataset demonstrate that despite its architectural simplicity, Slot-RAE achieves state-of-the-art results. It delivers comparable unsupervised object discovery, higher-fidelity image reconstruction, and robust zero-shot compositionality, all while being significantly faster and more computationally efficient than existing object-centric latent diffusion models.

Existing hypotheses represent a concept in an LLM as a single point, a linear direction, or a Gaussian cluster, yet it remains unclear how and why such structures emerge. Here, we show that concept geometry can be precisely characterized via Laguerre Geometry, in which a concept is defined as a region--a Laguerre-Voronoi cell or a union of cells--allowing us to strictly define, measure, and separate concepts. Building on this formulation, we show that finer-grained concept structures, such as inclusion and hierarchy, are naturally revealed by the Laguerre weights. We then push this geometry inside the transformer. Decomposing each layer into piecewise-linear operators, we show that a token's hidden trajectory is governed by two coupled mechanisms: a static tree of self-contained piecewise-linear flow, and a dynamic transport that hops the trajectory across trees when cross-token attention fires. This decomposition yields Geometric Lens, a training-free, hyperparameter-free method for reading out the exact concept a hidden vector encodes at any layer. We also develop Laguerre Autoencoder, a 2D visualizer that renders both the decision geometry and a model's full reasoning trajectory in one view. Finally, we move beyond explanatory geometry toward actionable interpretability, showing that Geometric Lens recovers the correct factual token when a model is prompted with in-context interference. The code is available on GitHub.

We study how unsupervised autoencoders trained on microscopic spin configurations from the Ising model learn macroscopic, theory-relevant variables underlying the data-generating process. Without embedding domain knowledge, we mimic a typical discovery setting: We quantify learning across multiple spatial (coarse-graining) scales and reveal two distinct dynamical regimes controlled by main hyperparameters (model depth, width, and learning rate) -- a magnetization-dominated regime and an energy-dominated regime characterized by trade-offs in their representation quality. The first regime is a transitory state exhibiting dynamical scaling and fluctuations that follow an ordering-to-scale; the second gradually shifts resolution towards smaller scales relevant for the energy representation. Deep models trained at moderate and fast rates become arrested before reaching these regimes. With a novel analysis of recursive-dynamic trajectories, we demonstrate that prediction errors induce flow fields that produce a common trajectory topology across all representation spaces. A dynamical viewpoint of learning is established in which intrinsic properties expose the effects of forced changes in representation during training. We utilize the intuition that learning operates as a process driven far from equilibrium by fluctuations from the training data and optimizer to provide an interpretive basis grounded in both the physical world and the machine models that represent it.

Governing equations provide compact descriptions of physical systems, yet the variables in which they are simple are often hidden in high-dimensional measurements. This challenge is sharper for forced systems, whose responses depend on both intrinsic dynamics and time-dependent inputs. Here we introduce FLARE, a forced latent autoencoder for response equations that learns compact response coordinates, identifies sparse input-dependent latent dynamics and decodes equation rollouts to full responses. By estimating latent dimension from data and separating state estimation from external forcing, FLARE enables forecasts to be initialized from past responses and driven by prescribed future inputs. Across known dynamical systems, application-scale forced responses and visual observations, FLARE recovers compact forced dynamics and predicts long-horizon high-dimensional responses under inputs not used for training. By turning learned coordinates into a dynamical interface, FLARE extends equation discovery to systems whose effective states are hidden within complex observations, providing a route for interpretable modelling and prediction of high-dimensional responses in forced dynamical systems.

Whole slide images (WSIs) provide rich diagnostic information for computational pathology, but their gigapixel scale, stain variation, scanner differences, tissue artifacts, and limited expert annotation make robust model training challenging. This paper presents a multi-source Masked Autoencoder (MAE) framework, named ProsMAE, for histopathology representation learning. Tiles from Prostate cANcer graDe Assessment (PANDA), CAncer MEtastases in LYmph nOdes challeNge 2017 (CAMELYON17), and BReAst Carcinoma Subtyping (BRACS) are used for ProsMAE pretraining to expose the encoder to diverse tissue morphology and acquisition conditions. The learned encoder is transferred for International Society of Urological Pathology (ISUP) grade classification through ProsCLS, using a frozen encoder and a linear classification head. ProsMAE achieved a higher mean validation quadratic weighted kappa (QWK) than the vanilla MAE frozen linear-probe baseline under the evaluated disjoint PANDA split. Repeated-split evaluation remains necessary to further establish robustness across split compositions.

Autism spectrum disorder (ASD) affects over 75 million individuals worldwide, yet scalable computational methods for remote behavioral screening remain limited. This study addresses two complementary challenges in automated detection of autism-related self-stimulatory behaviors from video: (1) identifying the optimal sequence-based neural network architecture and temporal sampling rate, and (2) characterizing data augmentation strategies for training on small behavioral datasets. For the first objective, long short-term memory (LSTM) and gated recurrent unit (GRU) models were trained on pose-derived features from the Self-Stimulatory Behavior Diagnosis (SSBD) dataset at frame sampling intervals of 1, 5, 15, 30, 45, and 90 frames. Both architectures exceeded prior convolutional neural network (CNN) baselines (62-76% accuracy), with peak accuracies of 97.5% (LSTM) and 98.75% (GRU) at a sampling interval of every 15 frames. For the second objective, ten data augmentation strategies were applied to an I3D transfer learning pipeline, with an ablation study quantifying the marginal contribution of each technique. Horizontal flip achieved the highest standalone accuracy (48.78%), while exclusion of upsampling from the augmentation pipeline produced the largest performance degradation, indicating its necessity for complex behavioral video augmentation. A personalized machine learning approach, in which per-subject models were trained and tested on temporally split segments of each video, produced consistent predictions (mean loss 1.84, SD 0.79). These results provide practitioners with concrete guidance on architecture selection, sampling rate, and augmentation strategy for video-based behavioral classification in data-scarce clinical domains.

Quantum diffusion models provide a physics-consistent route to generative learning by formulating noising and denoising directly on quantum states. However, applying such models to classical high-dimensional data is constrained by the qubit cost of state encoding and the computational burden of simulating large density operators. We propose a scalable hybrid generative pipeline that combines a classical autoencoder for dimensionality reduction with a mixed-state quantum denoising diffusion probabilistic model (MSQuDDPM) operating in the learned latent space. The autoencoder compresses data into compact latent codes that can be embedded into a small-qubit Hilbert space, after which the quantum diffusion model learns a generative distribution over latent density operators and decodes samples back to the original domain. Algorithmically, we simplify the reverse dynamics by predicting an estimate of the clean state $ρ_0$ at timestep $t$ and computing the one-step reverse update via an analytic backward propagation rule, rather than learning an explicit predictor for $ρ_{t-1}$. We demonstrate the proposed approach on MNIST image generation and discuss how mixed-state quantum diffusion can serve as a practical backbone for hybrid quantum--classical generative modeling under realistic qubit budgets.

Recently, Vision-Language-Action (VLA) models have demonstrated strong generalization across diverse tasks. However, effective robotic manipulation in physical environments fundamentally requires geometric understanding and spatial reasoning. While some VLA approaches attempt to incorporate 3D information, they are constrained by limited data availability and geometric information loss in current 3D encoding pipelines, and fail to jointly capture 3D geometry and temporally structured actions in dynamic environments. To address these limitations, we introduce Lift3D-VLA, a unified VLA framework that equips models with explicit 3D point cloud reasoning and enables temporally coherent action generation. First, building upon our previous work Lift3D, an enhanced 2D model-lifting strategy is proposed to geometrically align 3D points with pretrained 2D positional embeddings. This design enables direct point-cloud encoding within the VLA vision encoder while minimizing spatial information loss. Based on explicit 3D inputs, we propose Geometry-Centric Masked Autoencoding (GC-MAE), a dual-objective self-supervised framework that reconstructs the current point cloud while predicting its future geometric evolution. This formulation allows the 2D vision encoder to internalize both 3D structure and physical dynamics. To fully exploit 3D representations, we further design layer-wise temporal action modeling, which leverages multiple layers of the LLM to collaboratively predict action chunks, enabling temporally consistent predictions. Across 22 simulated tasks and 8 real-world manipulation tasks, Lift3D-VLA achieves 10.8% and 11.1% higher mean success rates on MetaWorld and RLBench than the best-performing prior VLA methods, and outperforms the strongest real-world baseline by 4 percentage points, while exhibiting stronger generalization to out-of-distribution perturbations.

Passive hydroacoustic monitoring often generates large volumes of continuous recordings that are only partially exploited due to the cost of manual annotation. Supervised detection methods perform well but require large labeled datasets, seldom available for rare signals or understudied environments. This work proposes a self-supervised exploration pipeline to address this limitation in low-frequency settings. A Masked AutoEncoder (MAE) is pre-trained on a reconstruction pretext task, then used to extract patch-level representations from spectrograms. Within each spectrogram, adjacent informative patches are aggregated into event-level embeddings, enabling the disentanglement of overlapping events. These embeddings are then clustered at the dataset scale using the dimension reduction algorithm UMAP and the clustering algorithm HDBSCAN to identify hydroacoustic patterns. The pipeline was applied to a multi-year hydroacoustic dataset collected near Mayotte Island, Indian Ocean, containing marine mammal vocalizations, seismo-volcanic signals, and anthropogenic noise. The 317 clusters were manually mapped to 15 hydroacoustic classes or noise in less than one hour. The method was evaluated in two ways. Quantitatively, when used as a classifier, it achieved performance comparable to two existing detectors. Qualitatively, it recovered known seasonal patterns of marine mammal acoustic activity. It also identified patterns of previously unstudied signals, thereby demonstrating its practical value.

Principal Component Analysis or PCA-like properties (orthogonality, variance ranking) are seldom realized in deep autoencoder architectures. In this work, we present ODIN (Orthogonal Dendritic Intrinsic Network), a novel autoencoder architecture that recovers PCA-like latent structure in a fully non-linear regime. By incorporating a set of geometric constraints directly into the training objective, ODIN encourages latent dimensions to be mutually orthogonal and ordered by explained variance, mirroring the interpretable decomposition of PCA while retaining the expressive power of deep networks. We provide theoretical grounding for these constraints and demonstrate their compatibility with standard encoder-decoder frameworks. We also establish empirical results for both synthetic and real world datasets, establishing a principled path toward interpretable, structured feature learning and dimensionality reduction.

We introduce the first multiplayer world model for highly dynamic environments governed by complex physical interactions. Whereas single-player world models treat the other agents as part of the environment, ours conditions on the action streams of multiple agents, learning to attribute changes in the scene to the correct player and to stay coherent under arbitrary combinations of their actions. We study this problem in the game of Rocket League, where players compete and cooperate under fast, tightly coupled dynamics. Trained on 10,000 hours of gameplay collected with publicly available bots, our 5-billion-parameter latent diffusion model generates four-player matches in real time, producing 20 frames per second on a single Nvidia B200 GPU. Although trained only on short clips, its rollouts stay stable far beyond the training horizon: distributional quality holds steady out to five minutes, the longest horizon we measure, and in practice we observe rollouts continuing for hours with no sign of collapse. We systematically investigate the central design choices: the video codec, the generative objective, and the multiplayer conditioning scheme. In addition, we characterize how behavior changes with model and data scale, including the capabilities that emerge and the failure modes that persist. We further develop targeted evaluations that probe the model's physical understanding rather than visual appearance alone. To support continued research on multiplayer world models, we release our dataset, our full training and inference codebase, and a live demo.

Integrating complex, multi-omics data presents significant challenges. Existing approaches often face a trade-off between model interpretability and representational capacity, with most either relying on post-hoc interpretation or use linear models that may overlook complex interactions. We report Pathway Activity Autoencoders for the multi-omics setting, which embed prior knowledge via pathway-informed architectural constraints, fostering interpretability, while preserving representational power. Our multi-omic framework is applied in the context of breast cancer and is evaluated in survival prediction and subtype classification with results indicating a positive effect of integration. We conduct analysis of individual omics layer impact on end-task performance, revealing that gene, protein, and microRNA expression layers provide the strongest contribution. Repeatability studies indicate that, while dropout improves model robustness and consistency, excessive regularisation can reduce predictive performance. Finally, visualizations of the learned feature space illustrate the framework's intrinsic transparency and clinical relevance. The results underscore the value of multi-omic integration and delineate the impact of individual omics layers, establishing practical guidelines for integration within our framework. Overall, our pathway activity autoencoder frameworks yield superior latent representations that are biologically meaningful and are directly translatable into clinically relevant insights.

Vibration-based damage identification in civil infrastructure is a challenging, ill-posed inverse problem due to measurement noise, sparse sensor arrays, and environmental variability. While deep learning is powerful for system identification, deterministic approaches lack reliable uncertainty quantification and can yield physically inconsistent results. This work proposes a robust probabilistic Scientific Machine Learning (SciML) framework: a physics-informed Gaussian copula variational autoencoder (PI-GCVAE) for structural health monitoring (SHM). First, we eliminate the need for data-driven surrogates by embedding a differentiable numerical eigenvalue solver directly into the VAE architecture. This ensures that latent space samples satisfy the governing equations of structural dynamics, reducing the trainable parameter space and improving generalization. Second, we replace the conventional independence assumption of latent variables with a Gaussian copula. This model captures complex, physics-dependent spatial cross-correlations between adjacent structural elements, defining feasible solutions while accounting for inherent system variability and measurement errors. Third, compared with alternatives such as Gaussian mixtures, our copula-based VAE provides an efficient distributional model for high-dimensional, strongly correlated latent spaces. We validate the approach using a synthetic dataset of a simply supported bridge subjected to various damage scenarios and corrupted with stochastic Gaussian noise. Synthetic data enables exhaustive validation against ground-truth stiffness values unavailable in practice. Results demonstrate that the PI-GCVAE accurately recovers the true posterior distribution, achieving 77.2% coverage. The proposed framework provides a reliable, scalable tool for early-stage damage diagnosis in operating bridges.

Complete digital 12-lead electrocardiograms (ECGs) are essential for AI-enabled cardiovascular assessment, yet many clinical ECG records, particularly those digitized from ECG images, remain incomplete because of short display formats, incomplete waveform digitization, lead loss, or signal corruption. We developed ImputeECG, a mask-conditioned one-dimensional Transformer autoencoder that completes 12-lead, 10-s ECGs while retaining all observed samples. The model was trained on PTB-XL and evaluated on PTB-XL and CPSC2018 under simulated incomplete settings, with additional real-world validation in a 43,633-record Kailuan clinical cohort after ECG image digitization. Metrics were computed over originally missing regions, with analyses of morphology and downstream diagnostic utility. On PTB-XL, ImputeECG reduced missing-region MAE by 41.7-51.0% and MSE by 54.0-63.7% versus the strongest baseline, with lower errors in R-peak timing, RR interval, QRS duration, QT interval, and P-wave, QRS-complex, and T-wave reconstruction. On CPSC2018, ImputeECG reduced MAE by 49.7-51.9%, supporting external generalization. In downstream multi-label classification, ImputeECG restored performance to 92.28% AUROC and 33.88% AUPRC in the most incomplete PTB-XL setting, approaching complete-ECG performance. On CPSC2018, completed ECGs achieved 94.75-95.89% AUROC and 78.83-81.86% AUPRC across settings. In Kailuan, ECG completion improved zero-shot sex prediction AUROC from 82.6% to 85.8% and reduced age prediction MAE from 10.72 to 9.87 years after image-based ECG digitization. These findings support ECG completion as a practical strategy for converting incomplete ECG records into AI-ready 12-lead, 10-s digital signals and extending the usable scope of ECG archives for digital cardiac assessment.

This paper challenges the assumption that vision-language models (VLMs) require fixed patch-based 2D vision features. Analyzing fine-tuned vision encoders, we find that representations become increasingly abstract and less spatially coherent during VLM training. Notably, models trained with image-text alignment (such as SigLIP2) develop a small number of specialized tokens that effectively summarize global image content. Building on this, we introduce RADIO1D, which compresses images into a compact, variable-length 1D token sequence using multi-teacher knowledge distillation and an autoencoder design. The resulting representations exhibit strong hierarchical summarization, enabling accurate scene understanding - even with a single token - and support improved composition-aware image retrieval. In VLMs, RADIO1D provides flexible accuracy-efficiency tradeoffs through adjustable token counts, delivering competitive performance on diverse multimodal benchmarks with lower computational overhead and better accuracy.

We propose MABLE (Masked Autoencoding with Bi-Lipschitz Decoding for Embeddings and Graph Metric Learning), a self-supervised framework for learning node and graph embeddings from large, heterogeneous graphs, demonstrated here on geospatial mineral-exploration data. MABLE combines masked reconstruction with fixed cosine-similarity losses that align matched augmented views while keeping unpaired embeddings well spread. A bi-Lipschitz feature decoder ties a low-dimensional reconstruction component of each node embedding to feature similarity, while matched-node consistency shapes the remaining context used by graph pooling. Lipschitz-controlled pooling helps stabilize graph-level representations under perturbations of retained node embeddings, while augmentation alignment trains robustness to masking, node dropping, and sampling variation. Across local copper and regional Arabian Shield studies, MABLE embeddings provide complementary downstream signal and produce coherent embedding-derived layers for hypothesis generation without learned discriminators or hard-negative selection.

Variational Autoencoders (VAEs) commonly assume a standard isotropic Gaussian prior over the latent space, an assumption that often fails to capture the true distribution of latent representations for complex datasets. This mismatch can limit reconstruction accuracy, reduce sample quality, and constrain the expressive power of the learned latent space. We propose the eXact-Prior Variational Autoencoder (X-VAE), a framework that replaces the conventional standard normal prior with a Gaussian prior derived from the latent representations of a pretrained autoencoder (AE). Specifically, the empirical mean and standard deviation of the AE latent codes are used to parameterize a data-adaptive prior that more closely reflects the underlying structure of the training data. During generation, X-VAE introduces a latent scaling factor that enables explicit control over the variance of the sampled latent vectors, providing a simple mechanism for balancing sample diversity and fidelity. This flexibility makes the proposed approach particularly well suited for applications such as industrial and engineering design, where generated solutions must satisfy strict structural or functional constraints while still permitting meaningful design exploration. We present the mathematical formulation of well-suited X-VAE, derive the corresponding KL divergence objective for the proposed prior, and evaluate the method on standard benchmark datasets. Experimental results demonstrate that X-VAE preserves reconstruction quality while producing latent representations that better align with the empirical data distribution, leading to improved controllability and more realistic generated samples.

Synthetic aperture radar automatic target recognition (SAR ATR) is critical for Earth observation and defense, but its practical deployment is constrained by scarce annotated training data. Self-supervised pre-training alleviates this label bottleneck, yet prevailing Transformer architectures incur prohibitive quadratic computational complexity, and conventional universal masking neglects the unique electromagnetic scattering properties intrinsic to SAR imagery. To address these limitations, we propose SAMBA (Scattering-Guided Bidirectional Mamba), an efficient self-supervised pre-training foundation model for SAR target interpretation. Our framework features three core innovations: (i) a linear-complexity Mamba encoder with a mid-sequence class token to mitigate computational bottlenecks; (ii) a three-level hierarchical Scattering-Guided Masked Autoencoder (SG-MAE) masking strategy guided by SAR physical priors, aligning the pretext task with SAR's intrinsic imaging mechanism; (iii) a lightweight SpatialMix feature interaction module to enhance cross-region feature fusion. We also design a two-stage cross-domain pre-training pipeline to optimize the overall pre-training process. Extensive evaluations demonstrate that SAMBA consistently delivers superior performance across all pre-training configurations, with substantially fewer parameters than both CNN and Transformer baselines. Compared with the default masking strategy in standard MAE, the proposed SG-MAE strategy further boosts the model's few-shot transfer capability. Benchmarking on seven downstream datasets covering classification and detection tasks shows SAMBA achieves state-of-the-art (SOTA) performance on most metrics, fully validating its robust generalizability across diverse SAR interpretation tasks. Source code and pre-trained weights are publicly available at https://github.com/mynswkk/SAMBA.

Masked autoencoding has emerged as a prominent paradigm for self-supervised learning on 3D point clouds, achieving competitive performance across downstream tasks. Unlike its 2D counterpart, 3D masked autoencoding directly reconstructs spatial coordinates, making it inherently susceptible to positional leakage. In this work, we identify that the decoder in existing 3D MAE frameworks tends to over-rely on positional information, which weakens semantic representation learning and leads to suboptimal feature quality. To address this issue, we propose MPL-MAE, a masked point learning framework that mitigates positional over-reliance while enhancing the utilization of encoder features. Specifically, we introduce a recalibrated positional embedding module that suppresses metric-dominant coordinate signals while preserving geometric topology, together with a gated positional interface module that dynamically regulates positional injection during reconstruction. These designs promote a more balanced interaction between spatial priors and semantic features, yielding robust and informative representations. Extensive experiments across downstream tasks demonstrate that MPL-MAE consistently achieves competitive performance, validating its effectiveness. Code is available at https://github.com/yanx57/MPL-MAE.

Deep learning methods have vastly expanded the capabilities of motion planning in robotics applications, as learning priors from large-scale data has been shown to be essential in capturing the highly complex behavior required for solving tasks such as manipulation or navigation for autonomous vehicles. At the same time, model-based planning algorithms based on search or optimization remain an essential tool due to their flexibility, efficiency, and the ability to incorporate domain knowledge via expert-designed algorithms and objective functions. We propose a new generative framework to unify these two paradigms. First, we learn an autoencoder with a high compression ratio and a latent space of hierarchically ordered, discrete-valued tokens. Leveraging both the dimensionality reduction and the hierarchical coarse-to-fine structure learned by this autoencoder, we then perform motion planning by directly searching in the latent space of tokens. This search can optimize arbitrary objective functions specified at test time, providing a large degree of flexibility while maintaining efficiency and producing realistic solutions by relying on the generative capabilities of the highly compressed autoencoder. We evaluate our method on nuPlan and the Waymo Open Motion Dataset, showing how latent space search can be used for a variety of guided behavior generation tasks, achieving strong performance for closed-loop motion planning and multi-agent guided scenario synthesis without requiring any task-specific training.

Deterministic few-step generation succeeds on continuous image latents but collapses to incoherent text on continuous text latents, and we show the cause is geometric rather than a training or scaling deficiency: a smooth, regularity-limited deterministic map cannot resolve a discrete branch choice before a sharp categorical readout, so few-step failure is governed by decoder sharpness, not transport accuracy. In the overlapping regime of real text autoencoders, we prove (Theorem 3) that the posterior-mean terminal step flips tokens at the rate of the latent mass in an $O(s(t))$ tube around decision boundaries. Two diagnostics, DABI (readout sharpness) and CCI (categorical commitment), measured on published checkpoints show that four independently built continuous-text decoders amplify a boundary-aligned perturbation far beyond a norm-matched isotropic one (DABI from $5\times10^{2}$ to $>10^{5}$), while image decoders have DABI $\approx 1$. Two mechanisms escape the continuous bound: categorical commitment (autoregressive decoders succeed despite sharper readouts) and stochastic re-injection (deterministic ODE at $K=4$ gives PPL 294 versus SDE 50 on the same model). In the idealized separated regime we prove matching sharp transport laws, including a dimension phase diagram: the deterministic stiffness needed to separate $M$ modes grows as $Θ(\sqrt{\log M})$ once the latent dimension is $Ω(\log M)$ (and as $M^{1/n}$ in fixed dimension), with a depth-$B$ hierarchy giving a $\sqrt{B}$-smaller per-step peak (Theorems 5-7); a coarea identity links these to the overlapping tube (Theorem 17). The result is an accuracy-depth-stiffness tradeoff: within the deterministic-continuous class the cost is irreducible, and both escapes step outside it.

Outlier detection (OD) aims to identify anomalous instances by learning the underlying structure of normal data (inliers), and is particularly challenging in fully unsupervised settings where no information about anomalies is available during training. Recent advances have leveraged the inlier-memorization (IM) effect, a phenomenon in which deep models memorize inlier patterns earlier than those of outliers, as a powerful signal for distinguishing outliers. However, despite its empirical success, the theoretical understanding of the IM effect remains limited. In this work, we present a theoretical study of the IM effect. Focusing on a simple autoencoder, we show that, under mild assumptions, the model can successfully memorize inliers while failing to memorize outliers during certain stages of early training. In particular, we characterize not only the emergence of the IM effect, but also its strength and persistence, and analyze how these properties depend on the data distribution and parameter initialization. In addition, building on these insights, we derive simple yet practical guidelines for enhancing the IM effect, including data preprocessing and parameter initialization schemes, achieving state-of-the-art performance on the ADBench datasets. Our findings provide a theoretical foundation for the IM effect and offer actionable directions for improving IM-based outlier detection methods.

In this study we present a formal definition of large discrete sets having, informally, three properties: their elements are easily recognized, easily generated, and the latter tasks are easily learned from examples. The formalism is specialized to sets of binary strings and a definition of "machine-learnability" based on the existence of a bounded-complexity Boolean autoencoder that fixes the elements of the set. We present experiments where the autoencoders are implemented by nets of Boolean threshold functions. Machine-learnability is demonstrated for Rorschach patterns (that may have reversed contrast in the mirrored half), and considerably "wilder" sets whose elements are only approximately fixed by admissible autoencoders. In the second case we demonstrate a simple iteration that evolves wild sets to make them properly machine-learnable.

Wearable devices produce large, high dimensional training logs for everyday runners, and interpretation rather than data collection is now the limiting step. This paper evaluates five dimensionality reduction models, three autoencoder variants, PCA, and a Variational Autoencoder, on their ability to compress nine sensor runner profiles into a single scalar performance indicator, the latent score. Because the setting is fully unsupervised, model quality is assessed along two complementary axes: reconstruction error (Mean Squared Error) and latent score interpretability, measured via Spearman and Kendall rank correlations, Mutual Information, and Permutation Importance. These are combined into a composite selection criterion that prevents selecting models on reconstruction accuracy alone. Feature rankings from the four metrics are aggregated via a modified Borda count, and their stability is confirmed by bootstrap validation. A two feature linear baseline is included to anchor the comparison. Deep autoencoder achieved the lowest reconstruction error and the highest composite score. Once the PCA hidden layers were widened, the deeper variants became closely competitive with Deep AE on the composite criterion, indicating that the limiting factor was hidden layer capacity rather than the one dimensional bottleneck. Running pace, aerobic decoupling, and average heart rate emerged as the dominant latent score drivers across all models and resampling runs, consistent with established physiology.

Appliance-level energy monitoring in office buildings produces noisy alerts that non-expert facility managers struggle to use. This paper proposes an end-to-end agentic pipeline that combines deep time-series forecasting, variational anomaly detection, and LLM-based reasoning to generate prioritized, actionable maintenance recommendations. The system tracks seven office appliances using a hybrid Singular Spectrum Analysis (SSA) and Long Short-Term Memory (LSTM) forecasting model, and applies a per-appliance LSTM Variational Autoencoder (VAE) with attention to flag abnormal daily consumption episodes. A three-stage LangChain pipeline begins with a Context Agent that always retrieves three core RAG sources (model reliability, hourly baseline, and expert knowledge) and conditionally adds up to three more (forecast context, anomaly history, global baseline) based on event characteristics, capped at eight reasoning steps. A Diagnosis Agent converts the evidence into a structured JSON diagnosis, and a Report Agent renders a human-readable narrative. A reflective memory layer incorporates operator feedback. The dashboard shows real-time 30-minute forecasts, intraday consumption, the previous day anomaly report, and a feedback form. We evaluate the forecasting model, anomaly detector with appliance-specific thresholds, and LLM reasoning on a 16-scenario benchmark including sustained and transient spikes, unexpected shutdowns, and systemic events, comparing five LLM backends under static vs. dynamic retrieval. Dynamic retrieval matches full static retrieval across all backends while cutting average context from six to three-six sources per event. The best backend scores 90.4/100 with a 100% pass rate at a 70-point threshold, and a fully local 7B-parameter model passes all 16 scenarios.

Neural audio autoencoders have become a core component of compression, feature extraction, and generation. However, while existing systems support variable bitrate, the vast majority of models still operate at a fixed latent frame-rate, allocating equal temporal budget to regions with very different information density, which can result in unnecessarily long sequences. We introduce Elastic Time, a dynamic frame-rate bottleneck that converts fixed-frame-rate autoencoders to dynamic ones. Our method learns a lightweight latent predictor used to decide which frames can be skipped and later reconstructed, enabling efficient greedy boundary selection at inference. Experiments show our method enables deployment-time rate control while improving efficiency-quality tradeoffs relative to baselines. Overall, we provide a flexible mechanism for adjusting temporal resolution in audio autoencoders, potentially facilitating more efficient downstream modeling for generation and long-context tasks.

Guided wave-based structural health monitoring (GWSHM) with onboard transducers offers significant potential for the early diagnosis of damage in engineering structures. However, the practical deployment of deep learning models is often hindered by the limited availability of labelled experimental data and the high computational cost of generating large-scale high-fidelity simulation datasets. This study presents a multifidelity transfer learning framework that integrates lightweight physics-based simulations, convolutional autoencoder (CAE)-based deep feature learning, a feed-forward neural network, and limited experimental measurements for accurate damage localisation and sizing in plate-like structures instrumented with piezoelectric transducers. A computationally efficient one-dimensional time-domain spectral element model is employed to generate a large synthetic dataset for pretraining, while transfer learning adapts the model to experimental domains using only a small amount of labelled data. The CAE-based transfer learning framework significantly outperforms its CNN-based counterpart in damage localisation accuracy. The model achieves excellent predictive performance with $R^2$ scores exceeding 0.93 for damage localisation and 0.99 for damage sizing. Its generalisation capability is demonstrated on previously unseen data, showing high prediction accuracy for damage scenarios not represented during pretraining or fine-tuning. The results establish the proposed framework as an accurate, computationally efficient, and practically viable solution for real-world GWSHM applications.

We study a quantum autoencoder (QAE) for compression-driven anomaly detection in brain MRI data. The approach leverages angle encoding to map image patches into quantum states, followed by a variational encoder-decoder architecture trained to discard information via auxiliary trash qubits. Anomaly scores reflect the degree to which inputs resist compression relative to normal data, with higher scores corresponding to deviations from the learned normal manifold. Evaluated on publicly available brain MRI DICOM datasets, the method achieves a slice-level ROC-AUC of approximately 0.95 and a patch-level ROC-AUC of approximately 0.813, outperforming classical autoencoder and PCA baselines. Analysis of the learned parameters reveals a pronounced encoder-decoder asymmetry, where effective anomaly detection arises from structured information compression within the encoder rather than increased parameter magnitude or decoder expressivity. This results in a controlled compression-reconstruction trade-off with a clear operating regime that supports principled threshold selection. Qualitative evaluation further shows that the QAE produces spatially localized anomaly heatmaps aligned with tumorous regions. The results, supported by promising baseline performances, demonstrate that quantum autoencoders provide an interpretable and controllable mechanism for anomaly detection based on incompressibility with respect to a learned latent representation. This work highlights the potential of quantum autoencoders as a principled tool for studying compression dynamics in quantum machine learning, with promising implications for decision support in medical imaging workflows.

Robots operating in real-world environments must in general be able to recognize previously unseen objects. As robotic systems move toward open-world autonomy, there is a growing, yet largely unmet, need for open vocabulary object detectors that are prompt-free and efficient enough for continuous deployment. We present AnomNOVIC, a two-stage known-workspace framework that combines a masked autoencoder (MAE) trained for anomaly detection, with NOVIC, a powerful real-time prompt-free open vocabulary image classifier. The MAE produces generic object-agnostic bounding boxes, allowing NOVIC to classify salient image regions without requiring a predefined candidate class list. We evaluate AnomNOVIC against strong open vocabulary baselines in a tabletop robot-object environment featuring the NICOL humanoid robot, reaching 47.1% AP / 57.5% AP50 for prompt-free recognition, and 59.0% AP / 72.5% AP50 if class candidates are provided. Across additional datasets, including an in-the-wild test set with 48 unique objects, AnomNOVIC reaches up to 82.6% prompt-free detection and classification accuracy. These results significantly surpass all tested open vocabulary baselines, including YOLO-World-v2, OWLv2, and YOLOE.

Vision-based tactile sensors (VBTSs) enable robots to infer contact geometry and force-related cues by imaging deformation through an internal camera, yet generalisation across sensor designs remains poorly understood. We present TacVerse, a multi-sensor dataset and benchmark for cross-sensor vision-based tactile perception. The dataset contains 106,800 tactile images from seven VBTSs and supports three downstream tasks: shape classification, grating classification, and force regression. Experiments are conducted under three settings: within-sensor training, zero-shot cross-sensor transfer, and few-shot adaptation. Strong within-sensor performance across all tasks indicates that the collected tactile observations are informative for the target objectives. Direct cross-sensor transfer, however, leads to substantial degradation. Shape classification is comparatively robust, whereas grating classification and force regression are more sensitive to sensor shift. Few-shot adaptation for force regression consistently improves performance on unseen target sensors but does not fully close the gap to within-sensor upper bounds. A representation study further shows that MAE (Masked Autoencoder) pretraining provides the most consistent gains across tasks and sensors. TacVerse provides a controlled testbed for studying sensor shift, data-efficient adaptation, and self-supervised learning in tactile perception.

Accurate channel state information (CSI) prediction is essential for proactive beamforming and resource management in 5G massive MIMO systems, yet the deployment of high-accuracy transformer-based predictors on base-station hardware remains challenging because the most capable models carry upwards of 30,M parameters. This paper introduces Lightweight PCGAE-Net, which addresses the efficiency problem not by post-hoc compression but by correcting two architectural flaws in the current state of the art. The first is a sequential attention ordering bias: in CS3T-UNet, group-wise temporal attention (GTA) always operates on features that have already been transformed by cross-shaped spatial attention (CSA), distorting what temporal information GTA can capture. We remove this dependency by routing both attention modules to the same layer-normalized input and combining their independent outputs through a learned per-channel sigmoid CrossGate. The second flaw is an uncompressed bottleneck: applying full self-attention at the deepest encoder stage, where channel depth reaches $4C$, is quadratically expensive and carries redundant features. A Bottleneck AutoEncoder (BAE) with $1\times1$ convolutions halves this depth and uses an auxiliary reconstruction loss to prevent information collapse. Wrapping these components inside a shallower encoder-decoder with frequency-domain dimensionality reduction ($N_f\!=\!32$, $C\!=\!48$) produces a model with just 8.54,M parameters -- 58% fewer than the CS3T-UNet baseline -- that outperforms it by up to 3.26,dB at 5,km/h and 6.0,dB at 9,km/h in single-step prediction on QuaDriGa dataset.

This work presents a machine learning framework that leverages an autoencoder (AE) for the efficient modeling of FinFET. We first calibrated a BSIM-CMG model to generate a dataset of current-voltage (ID-VG) characteristics. This data was used to train an autoencoder that compresses full I-V curves into a low-dimensional latent space, which intrinsically encodes key device physics. A key innovation is the explicit incorporation of parameter such as drain to source voltage (VDS) as an input feature, enhancing the model ability to capture bias dependent variation. The trained model successfully reconstructs full I-V curves and directly extracts critical device metrics including threshold voltage (VTH), subthreshold slope (SS), and peak transconductance (gm). This approach demonstrates that data driven compact models, built from actual characterization data, can achieve high accuracy with minimal training data, providing a powerful tool for rapid device characterization, modelling and circuit level simulation.

Self-supervised learning in fluorescence microscopy often relies on 2D projections, despite the inherently three-dimensional nature of cells. We present a systematic comparison of 2D and 3D masked autoencoders (MAE-2D vs. MAE-3D) on volumetric microscopy data. Under matched architectures and training protocols, MAE-3D consistently outperforms 2D max-projection and slice-based variants on downstream single-cell tasks. We further align visual representations with a pretrained protein language model (ESM2) and show that cross-modal supervision yields larger gains for volumetric models. Channel cross-attention and frequency-domain regularization are critical for leveraging 3D spatial context. On protein--protein interaction prediction, our best model achieves a ROC--AUC of 0.86, while on protein localization it reaches an AUC$_{\text{micro}}$ of 0.95 and an F1$_{\text{micro}}$ of 0.74, demonstrating competitive performance on both tasks. Overall, our findings highlight the potential of volumetric modeling and multimodal alignment for representation learning in single-cell microscopy.

Learning Koopman operators with autoencoders enables linear prediction in a latent space, but long-horizon rollouts often drift off the learned manifold, leading to phase and amplitude errors on systems with switching, continuous spectra, or strong transients. We introduce two complementary components that make Koopman predictors more robust. First, we add an attention-free latent memory (AFT) block that aggregates a short window of past latents to produce a corrected latent before each Koopman update. Unlike multi-head attention, AFT operates in linear time and adds only $\approx$30k parameters ($3d^2 + T^2$, fewer than matched multi-head attention), yet captures the local temporal context needed to suppress error divergence. Second, we propose dynamic re-encoding: lightweight, online change-point triggers (EWMA, CUSUM, and sequential two-sample tests) that detect latent drift and project predictions back onto the autoencoder manifold. Across three benchmark systems -- Duffing oscillator, Repressilator, IRMA -- our model consistently reduces error accumulation compared to a Koopman autoencoder and matched-capacity multi-head attention. We also compare against GRU and Transformer autoencoders, evaluated both from initial conditions and with a 50-step context, and find that Koopman+AFT (with optional re-encoding) attains markedly lower long-horizon error while maintaining lower inference latency. We report improvements over horizons up to 1000 steps, together with ablations over trigger policies. The result is a fast, compact predictor that stays on the learned manifold over long horizons.

Latent diffusion models achieve strong generative performance by operating in a compressed latent space produced by a variational autoencoder (VAE). However, it remains unclear whether all latent channels contribute equally to the diffusion process, or whether significant redundancy exists. We introduce PeLAP-A (Adaptive Latent Pruning for Diffusion), a lightweight framework that augments a standard latent diffusion pipeline with a learnable channel-wise importance predictor. A two-layer MLP operating on globally pooled latent features produces a soft mask that suppresses unimportant latent channels before they enter the denoising UNet. The entire system is trained jointly on CIFAR-10 under a combined diffusion, reconstruction, and sparsity loss. Experiments reveal a striking result: under aggressive sparsity regularization (lambda = 0.01), the importance predictor drives all latent channels to near-zero yet the denoising UNet achieves lower diffusion loss (0.0236 vs. 0.0240) and lower VAE reconstruction MSE (22.59 vs. 24.67) compared to the unpruned baseline. We term this the sparsity collapse phenomenon and provide an analysis of why it occurs and what it reveals about the information requirements of latent diffusion models. These findings constitute an exploratory study of sparsity dynamics in latent diffusion training, and demonstrate that denoising UNets can remain remarkably robust to latent channel suppression even under aggressive regularization. Code is available at: https://github.com/kissasium/PeLAP-A.git.

Jamming and spoofing pose significant threats to wireless and satellite navigation by disrupting radio-frequency (RF) signals and compromising availability and integrity. Robust RF interference direction finding through angle-of-arrival (AoA) estimation is therefore essential for detecting and localizing anomalous signals. Although data-driven methods perform well under line-of-sight (LoS) conditions, their performance degrades in practical environments due to non-line-of-sight (NLoS) multipath propagation. In this work, we propose a hybrid learning framework that incorporates physics-informed constraints into deep neural networks to improve the robustness of AoA estimation. A neural network is trained to estimate the azimuth and elevation of incoming signals received by a four-element antenna array, while a physics-informed loss enforces consistency between the predicted angles and inter-antenna phase differences under a plane-wave model. We further introduce a latent-space classifier to distinguish LoS from NLoS samples. Since inter-antenna phase differences under LoS propagation exhibit domain-invariant structure across environments, the physics-based loss is applied only to LoS samples, promoting physically consistent and domain-invariant representations without over-constraining the model in NLoS scenarios. In addition, domain-incremental learning (DIL) across NLoS environments with varying scatterer distributions improves cross-domain generalization. Evaluations on real-world datasets show that the proposed method reduces AoA estimation error by up to 6° in low-exemplar settings compared with DIL baselines.

The high cost of spatial transcriptomics (ST) has driven extensive studies into predicting gene expression directly from H&E histology images. However, this prediction task faces an inherent limitation, as tissue morphology alone provides insufficient information to fully resolve underlying gene expression. To address this limitation, a recent study leverages partial gene expression to guide the prediction process alongside histology images. Building on this paradigm, we approach the prediction task as a spatial imputation problem, employing a Masked Autoencoder (MAE) to utilize a small fraction of gene expression as genetic anchors for inferring whole-slide gene expression profiles. Specifically, we propose a bio-saliency score and a learning-to-rank strategy to adaptively identify the most informative spots within the tissue. Based on these identified spots, our framework selects contiguous regions as genetic anchors to ensure suitability for real-world ST profiling hardware. To effectively leverage these anchors, we design a cross-modal joint encoder that integrates visual and genetic modalities. By aligning the selected anchors with their corresponding visual features via contrastive learning, the encoder generates robust joint representations to accurately predict gene expression across the whole slide. Notably, our framework consistently surpasses existing methods in both histology-only prediction and spatial imputation, achieving superior accuracy even without genetic anchors and further excelling with as little as 10% transcriptomic coverage. Our code is available at https://github.com/Kyyle2114/CAMMST.

HAR using Inertial Measurement Unit (IMU) sensors is vital for healthcare monitoring and rehabilitation. Despite deep learning advancements, major challenges remain: reliance on labeled data, multi-sensor fusion complexity, and the limited ability of unsupervised methods to capture spatiotemporal dependencies. These issues are pronounced in real-world scenarios with noisy data, overlapping activities, and missing labels. We propose a fully unsupervised spatiotemporal feature fusion framework using a memory-augmented autoencoder. It enhances activity representations via short temporal windows of multi-sensor IMU data, enabling real-time applications. Our framework extracts hierarchical static features via a Stacked Autoencoder, fusing them within and across sensors. A sequence-to-sequence LSTM Autoencoder then temporally refines these features, incorporating historical motion patterns without labels. We analyze key hyperparameters to identify configurations that maximize feature separability under short-window constraints. Evaluated on DaLiAc and PAMAP2 using realistic inter-class window segmentation, our method achieves 96.6% and 98.4% accuracy, respectively, surpassing supervised baselines and unsupervised approaches. Our method improves feature separability by up to 9% despite shorter temporal windows. While our realistic inter-class segmentation reduces accuracy by ~7%, it was intentionally adopted to better reflect real-world activity transitions and practical relevance.

Real-time process monitoring requires methods that extract actionable information from high-dimensional time-series data. In this work, we present a new approach for process monitoring that combines tools of topological data analysis (TDA) and machine learning. In the proposed approach, we represent multivariate time-series data as manifolds and use topological descriptors to summarize the structure of such data; we then use a neural ordinary differential equation to learn the dynamic evolution of the topological structure of the system. Using real data from an industrial process, we show that this trajectory-based event detection approach is effective at detecting diverse types of events. We contrast this approach against reconstruction-based approaches such as principal component analysis and autoencoders and against a trajectory-based approach that uses Koopman autoencoders.

\noindent\textbf{Background and Objective:} Speech has emerged as a low-cost and non-invasive digital biomarker with considerable potential for cognitive impairment detection. However, limited labeled data and cross-dataset variability remain major challenges for robust speech-based screening systems. \par\noindent\textbf{Methods:} We developed a segment-level representation learning framework for speech-based cognitive impairment detection. Speech recordings were divided into short segments and converted into spectrogram representations. To improve robustness under limited-data conditions, offline and online augmentation strategies were combined with autoencoder-based representation learning and contrastive objectives to enhance discriminative latent representations. \par\noindent\textbf{Results:} Experiments conducted on four independent Mandarin Chinese speech datasets demonstrated stable and competitive performance in both binary and three-class classification tasks, with particularly notable improvements in the clinically challenging three-class setting. Ablation studies further supported the effectiveness of the proposed framework. \par\noindent\textbf{Conclusions:} The findings suggest that segment-level speech representation learning may provide a scalable and practical approach for cognitive impairment screening in resource-constrained clinical settings.

Latent diffusion models (LDMs) enable efficient image-to-image translation but discard fine spatial details during compression, degrading downstream perception tasks. We identify two bottlenecks: the autoencoder, which loses spatial information, and the conditioning pathway, which further degrades the source signal through naive downsampling. We propose two lightweight, backbone-agnostic fixes: a Source-Conditioned Autoencoder (SCAE) that injects high-resolution source features into the decoder via skip connections, and a Learnable Guidance Encoder (LGE) that replaces naive downsampling with a learned conditioning signal. Evaluated on RGB-to-SWIR translation for driving scenes with two denoiser backbones (U-Net and DiT), our approach improves detection mAP by up to 2x over the latent diffusion baseline, with up to 3.4x gains on small objects (COCO-small, <32^2 px^2), while achieving state-of-the-art FID. We further show that FID and detection performance are poorly correlated, motivating multi-axis evaluation. Results generalise zero-shot to the public RASMD benchmark. We will publicly release test data with annotations, all checkpoints, and training code.

Event cameras capture dynamic scenes with exceptional temporal fidelity by representing them as a continuous stream of microsecond resolution \textit{events}. Each individual event, however, only carries minimal semantic value, merely signaling a localized brightness change. To derive meaningful signals, downstream algorithms need to quickly integrate cues from a potentially massive torrent of low-information events. Current architectures, however, are easily overwhelmed, struggling to balance capturing fine-grained temporal dynamics and maintaining a manageable data throughput. This paper proposes a framework to re-tokenize event streams into a small set of highly informative \textit{neural events}, each representing a local spatio-temporal context window with a discrete learnable code. Every time this code flips, a neural event is triggered, yielding a highly compressed data stream. We demonstrate that, across object detection and classification, networks trained on neural events are on par or surpass the performance of state-of-the-art approaches while reducing the event rate by a factor of 2.0.

Three-dimensional (3D) brain MRI is central to clinical neurology and neuro-oncology, where generative models could augment under-represented cohorts, simulate disease trajectories, and support privacy-preserving data sharing. Latent diffusion has been the go-to solution for modeling imaging data, but it places two competing demands on the tokenizer: encoder embeddings must retain the clinical information that downstream tasks act on, and the decoder must reconstruct anatomically faithful volumes. Existing reconstruction-driven tokenizers achieve the second at the expense of the first. To address this, we introduce a fully volumetric masked-autoencoder (MAE) based tokenizer for 3D brain MRI latent diffusion, decoupling encoder and decoder: a frozen 3D MAE encoder produces clinically informative embeddings, while a dedicated CNN decoder reconstructs voxels from a linear projection of those embeddings. We pretrain the encoder on 35,309 volumes from 18 public cohorts spanning four modalities, ten disease categories, and 200+ acquisition sites, and demonstrate its dual utility in two settings. First, on a 23-task linear-probing benchmark, the encoder outperforms or matches SOTA models (i.e., BrainIAC, BrainSegFounder, and MedicalNet) on 21 of 23 tasks. Second, a conditional diffusion transformer (DiT) trained on these clinically informative embeddings supports both conditional generation across six variables and patient-specific longitudinal forecasting. Together these results establish a single 3D brain-MRI embedding space capable of both downstream clinical tasks and controllable generation.

One of the major difficulties in the mechanistic interpretability of neural networks is the occurrence of polysemanticity, which suggests that each neuron is typically responsible for multiple different tasks, impeding a clean interpretation of their function. The seminal paper of Elhage et al. (2022) argues that this occurs due to superposition, a phenomenon where the neural network represents distinct features as non-orthogonal directions in a lower-dimensional space, a strategy that allows much greater compression of the data without sacrificing fidelity due to the feature sparsity of input vectors. Elhage et al. (2022) empirically validates these hypotheses in a rather natural and simple autoencoder with sparse inputs. The contribution of the present work is to analyze the mathematical basis for the occurrence and optimality of superposition, while rigorously corroborating some of their findings. In particular, we provide upper and lower bounds for the L2 reconstruction loss, tight in the very sparse regime, for power activation functions. A short list of interesting open problems are also included at the end.

Representation Autoencoders (RAEs) have improved diffusion and flow models by semantically richer latent space owing to the strongly label-wise clustered DINO features in the pretrained encoders. Yet in the distillation stage, the severe anisotropy and large curvatures caused by the rich semantic representations would hinder the convergence and performance, making the trajectory-based distillation unstable. In this work, we argue that the RAE latent space is compatible with distillation via the newly proposed Drifting Models. We first quantitatively study the curvatures and isotropy statistics across different autoencoders, and theoretically reveal that Drifting Model itself is highly likely to fail on extremely scattered spaces like reconstruction-based VAEs. These motivate us to apply the drifting paradigm directly to representation autoencoders. Our proposed method, Drift-RAE, distills pretrained flow models in RAE latent spaces using Drifting, together with insightful modifications that improve training stability by thereotically aligning drifting fields with other frameworks. Regarding the experimental evidences, we achieve 1.77 FID on ImageNet 256 dataset using only 10k distillation steps, surpassing state-of-the-art RAE distillation methods and appearing comparative with the original Drifting Model without requiring an auxiliary MAE feature extractor. The code will be made publicly available.

The fundamental limitation of traditional strand-based modeling is not simply data scarcity, but the ill-posedness of inferring complex 3D fields from 2D imagery without structural constraints. This unconstrained regression leads to catastrophic failures in resolving both global occlusion (e.g., in ponytails) and local directionality (e.g., in curls), resulting in over-smoothed, plausible-but-incorrect geometries. To resolve this, we integrate the strong geometric priors of Large Reconstruction Models (LRMs) into the strand generation pipeline. Using the LRM mesh as a structural anchor, we employ a novel Dual Orientation AutoEncoder to lift coarse geometry into high-fidelity strands. By resolving vector field singularities through latent-space optimization and surface-guided refinement, our method effectively disentangles complex topological structures, setting a new benchmark for robustness and accuracy in hair reconstruction.

Sparse autoencoders (SAEs) are standard tools for mechanistic interpretability, but current SAE families are constrained by fixed encoder nonlinearities such as ReLU, JumpReLU, and TopK. This hard-codes a particular sparsity mechanism into the model and can distort the reconstruction-versus-sparsity trade-off. We introduce the Rational Sparse Autoencoder (RSAE), which replaces the fixed encoder activation with a trainable rational function. Rational activations are flexible enough to uniformly approximate the activation primitives used by existing SAE families on compact domains (for TopK, the thresholded gate obtained after a separating top-k threshold is supplied), while also providing a richer function class for adapting to the observed pre-activation geometry. We realise this idea through a two-stage pipeline: an initialisation procedure that copies the pre-trained baseline SAE weights, plugs in rational coefficients obtained by the relaxed Remez exchange on synthetic data, and calibrates the scale parameters along with the rational coefficients; followed by a fine-tuning step under the standard sparsity-regularised reconstruction objective. Empirically, on residual-stream activations of three open-weight language models and across all three baseline activation families, the RSAE strictly improves on it after the fine-tuning step, both on reconstruction-side metrics and on downstream-behaviour metrics, without sacrificing feature-level interpretability under sparse probing. These gains are consistent across host language models, across baseline activation families, and across the full range of baseline sparsity we tested, while the upgrade itself adds only a handful of scalar parameters per autoencoder and runs in minutes on a single consumer GPU.

Large language models (LLMs) are widely used in text-to-image (T2I) systems, but they are typically limited to text encoding, while denoising is handled by newly trained generative backbones. The emergence of representation autoencoders (RAEs) shifts the generation target toward semantically structured visual representations, creating a latent space that is more compatible with pretrained LLM priors. Inspired by multimodal LLMs (MLLMs), where an MLP projector is sufficient to align clean visual representations with a pretrained LLM, we repurpose the MLLM itself as a noisy representation encoder, extending this mechanism from clean to noisy inputs. We present RepFusion, which uses the resulting MLLM outputs as the conditioning signal for a diffusion transformer. In controlled comparisons at similar inference budgets, RepFusion outperforms baselines that devote comparable capacity to newly initialized denoisers. These results demonstrate that MLLMs provide strong priors for denoising visual representations and that, by conditioning on evolving noisy representations, test-time compute can be productively spent on repeated MLLM conditioning in modern T2I systems.

Error-bounded lossy compression is a fundamental technique for managing the rapidly growing volumes of scientific data produced by modern simulations and observational instruments. Most state-of-the-art-compressors follow a prediction-residual paradigm, where compression effectiveness depends on the quality of the predictor: more accurate predictions generate smaller residuals that are easier to compress. This observation raises a question: can modern machine learning models serve as superior predictors for scientific data compression? Answering this question directly is challenging because developing compression-specific ML predictors requires substantial resources. Instead, we leverage the climate domain where highly accurate pretrained weather forecasting foundation models already exist, making them an ideal testbed. We present a framework that integrates spatial and temporal deep learning models into a conventional error-bounded compression pipeline. The framework supports auto-regressive forecasting models and avoids error accumulation. Using ERA5 climate data as a representative large-scale scientific dataset, we evaluate three distinct ML predictors: a VAEformer-based codec (CRA5), a graph neural network forecaster (GraphCast), and a vision-transformer forecaster (Aurora), against the state-of-the-art compressor SZ3.1 under identical quantization and entropy-coding backends. Our evaluation over approximately 1.7 TB of data reveals a surprising result: although ML predictors generate more accurate predictions and can improve reconstruction quality by up to 91% while achieving up to 9.6x higher compression ratios for highly predictable variables, they do not improve overall dataset-level compression ratio. We show that prediction accuracy alone is insufficient: the spatial structure of the resulting residuals plays a decisive role in entropy coding efficiency.

Self-supervised foundation models have shown strong promise in medical imaging. However, existing MRI foundation-model studies have primarily emphasized segmentation and dense prediction tasks, while systematic investigation of self-supervised foundation models for MRI-based disease detection remains limited. In this work, we investigate two major self-supervised pretraining paradigms for MRI-based disease detection: reconstruction-based learning via Masked Autoencoders (MAE) and predictive representation learning via Joint Embedding Predictive Architectures (JEPA). We study the role of auxiliary objectives by introducing a novel spectral-domain reconstruction loss for MAE to enhance sensitivity to fine-grained anatomical structure, and by integrating variance--covariance regularization (VCR) within our JEPA framework to encourage decorrelated latent representations. Our models are pretrained on heterogeneous single-contrast MRI volumes in a contrast-agnostic setting, without modality concatenation. Across five downstream disease detection tasks, our results highlight the importance of self-supervised objective design for medical foundation model pretraining, demonstrating that the downstream benefit of each objective is determined by its relevance to the task's structure. Specifically, spectral regularization yields the largest improvements when the downstream discriminative signal is characterized by strong high-frequency anatomical structures, while covariance regularization is most beneficial when discriminative information spans multiple decorrelated feature dimensions. MAE with spectral-domain supervision consistently achieves superior downstream performance for MRI-based disease detection. These findings suggest that self-supervised objectives in medical imaging encode specific biases, and their downstream benefit is fundamentally conditioned on the task's structure.

Self-supervised learning advances audio representation for multimedia analysis. However, prevailing data-centric approaches rely on massive real-world corpora, increasing training costs, curation burdens, and privacy barriers. To address this, we present AudioPG, a procedural synthesis framework eliminating real audio recordings during pre-training. AudioPG trains a Transformer-based masked autoencoder on waveforms generated on-the-fly from basic acoustic primitives and composition rules. The encoder transfers effectively to real audio benchmarks, achieving 90.60% accuracy on ESC-50, 0.546 mAP on FSD50K, 88.17% on UrbanSound8K, and 97.03% on Speech Commands V2. Notably, pre-training completes in under 20 minutes on a single GPU. Latent space analysis reveals physical factors, including fundamental frequency and relative intensity, emerge in orthogonal subspaces, making representations linearly decodable. These results establish procedural synthesis as an efficient, interpretable pre-training signal when large-scale corpora are unavailable. Our code is available at: https://github.com/Freyliu0516/audioPG.

In this paper, we introduce Representation Prediction via Autoencoding using Iterative Refinement (RePAIR) - a novel self-supervised representation learning architecture that synthesizes Masked Autoencoders (MAE), Joint Embedding Predictive Architectures (JEPA), and Bidirectional Encoder Representations from Transformers (BERT). We demonstrate how it can be used to encode objects in sequential data like consecutive chess positions into compact yet meaningful representations. The basic principle of the architecture is to mask large portions of a sequence of latent states, similar to BERT and MAE. Then, we apply a lightweight Predictor to the latent representations that repairs gaps in the sequence in a lower-dimensional embedding space akin to JEPA. Our experiments in the domain of chess show that the Encoder refines the board representations such that meaningful chess concepts emerge clustered in the latent space. Furthermore, reconstructions of the masked board states show that the model is able to reason about the piece movements without relying on costly reinforcement learning methods. Lastly, we find that the resulting representation space allows for quick and intuitive dissections of chess games by observing the game path trajectories in this semantically rich space.

Built on pretrained vision foundation models (VFMs), representation autoencoders (RAEs) have recently emerged as a promising approach for constructing semantically rich latent spaces for image generation. However, their reconstruction quality often remains suboptimal, largely because deep VFM representations do not preserve sufficient fine-grained visual detail. This limitation becomes even more severe after discretization, where missing low-level information is difficult to recover. In fact, we observe that shallow VFM features retain considerably richer local appearance and structural detail, which complements the high-level semantics carried by deep features used in existing RAEs. Motivated by this complementary property, we propose Ideal, an In-depth Alignment framework for discrete representation autoencoding. By jointly aligning quantized tokens with both shallow and deep VFM features, Ideal enables the resulting discrete visual tokens to preserve both visual fidelity and rich semantics. Extensive experiments demonstrate that Ideal yields superior reconstruction performance, achieving 0.61 rFID on ImageNet and outperforming the previous best method by 0.28. When used for autoregressive image generation, Ideal further produces a gFID of 1.89, establishing a new state of the art for autoregressive image generation.

Disentanglement, the separation of factors of variation in data using neural networks, remains a long-standing challenge in machine learning. Prior work has addressed this problem with variational autoencoders and generative adversarial networks that incorporate ideas from variational inference and information-theoretic constraints. In contrast to methods that rely on continuous representations, we propose a design that treats disentangled representations as symbolic structures, motivated by the compositional relationships among the concepts that make up samples from a distribution. However, learning discrete symbolic structures with neural networks while maintaining differentiability is difficult and often requires complex architectures. To address this, we introduce an unsupervised learning algorithm that uses holographic reduced representations (HRR) for neural disentanglement. We show that the HRR unbinding operation provides an inductive bias for separating factors and yields competitive results against baselines, as measured by latent traversals and disentanglement metrics. We complement these empirical findings with an information-theoretic analysis of the HRR unbinding channel. We prove that unbinding induces approximately independent symbol-value pairs and derive a per-slot capacity bound that quantifies how many distinct symbolic concepts can be reliably encoded, giving a quantitative account of the inductive bias toward disentanglement. The resulting representations differ from standard autoencoder-based models, in that their latent units are vectors that are summed together, rather than scalar dimensions of a low-dimensional latent vector. We show that this HRR representation is more robust to noise than other disentangled representations and maintains reconstruction quality across a range of SNRs.

Real-time video restoration (VR) for live streams requires high-resolution outputs under strict per-frame latency constraints. Existing one-step diffusion-based VR models remain difficult to deploy on consumer-grade GPUs due to two main bottlenecks: quadratic spatial attention at high resolutions and the latency-memory overhead of large video autoencoders. We present SwiftVR, a streaming one-step generative VR framework that reduces both bottlenecks under a causal chunk-wise protocol. For attention, mask-free shifted-window self-attention gathers each spatial window into a dense tensor via deterministic indexing, keeping all attention calls on the dense scaled dot-product attention path without masks, cyclic shifts, padding, or hardware-specific sparse kernels. Because SwiftVR uses only standard dense SDPA calls, the trained model transfers to consumer GPUs without retraining or custom kernels. For autoencoding, a lightweight Restoration-aware Autoencoder enables fast chunk-wise decoding while preserving reconstruction quality. On a single H100, SwiftVR sustains 31FPS at 2560x1440 and 14FPS at 3840x2160, whereas all compared diffusion-based VR baselines exceed the memory limit at 4K. On a consumer RTX5090, SwiftVR reaches 26FPS at 1920x1080. To our knowledge, SwiftVR is the first generative VR model to achieve real-time 1080p streaming on a consumer-grade GPU, while attaining strong no-reference perceptual quality with lower inference cost. Project is available at https://h-oliday.github.io/SwiftVR.

Video generative models have become increasingly powerful, but long-range consistency remains challenging to achieve because even a few dozen frames require impractically long transformer sequence lengths. We show that this issue can be mitigated by generating video using coarse-to-fine rollout within a multi-scale token space. Our approach is simple: first, we pre-train an autoencoder that compresses each frame into a hierarchy of tokens, with levels ranging from the typical latent resolution to only a handful of tokens per frame. The coarsest levels capture the most consequential information, such as scene layout and semantics, while finer levels add high-frequency appearance and texture. Then, we train a video diffusion model to generate these tokens using coarse-to-fine rollout. By carefully controlling the level of detail at which frames are generated and used as context during each rollout step, we are able to preserve long-range consistency in geometry and object permanence while spending less compute on the long-range consistency of less perceptually relevant details. We validate this approach using a custom dataset of long Minecraft videos, where it produces substantially more consistent rollouts compared to existing baselines.

Autoencoders (AEs) learn low-dimensional representations by mapping data into a latent space while minimizing reconstruction error. Despite their empirical success, theoretical understanding remains limited and largely restricted to linear models or settings without a bottleneck. In this work, we study nonlinear AEs with a fixed finite-dimensional bottleneck in the mean-field (MF) regime. We derive explicit MF learning dynamics for both encoder and decoder, providing a tractable characterization of training in the nonlinear setting. We show that, over finite time horizons, the empirical risk of finite-width networks trained with stochastic gradient descent closely tracks the MF risk trajectory with high probability. At optimality, we further establish that the finite-width risk converges to the MF optimum, demonstrating that finite networks are sufficiently expressive to approximate the infinite-width solution.

Designing neural architectures for time-series forecasting and anomaly detection remains a resource-intensive task that often requires substantial domain expertise. Traditional Automated Machine Learning (AutoML) systems typically rely on static, predefined search spaces, limiting their ability to adapt to diverse data characteristics. We present GenAutoML, an agentic framework that leverages Large Language Models (LLMs) as neural architects to bridge natural-language requirements and executable PyTorch implementations. The framework incorporates a Sandboxed Reflection Loop for autonomous code refinement and a Signature-Aware Runtime that enforces architectural consistency and execution safety. To improve robustness under non-stationary conditions, we further introduce a Dynamic Reversible Instance Normalization (Dyn-RevIN) wrapper. Experiments on the ETTh1, ETTm1, and Weather benchmarks demonstrate that GenAutoML can dynamically generate task-specific neural architectures tailored to dataset characteristics. Among the generated models, WaveInterferenceNet achieves inference latency below 0.01 ms per sample while maintaining competitive predictive performance. By emphasizing computational efficiency, architectural adaptability, and stable optimization behavior, GenAutoML enables the creation of ultra-lightweight neural networks suitable for resource-constrained and latency-sensitive Edge AI deployments.

Lossy compression is essential for massive spatiotemporal data from scientific simulations. Learned compressors can achieve high compression ratios at moderate accuracy targets, but their aggregate reconstruction losses do not guarantee accuracy for each block. Existing Guaranteed Autoencoder (GAE) methods add a per-block residual correction by retaining SVD/PCA-style coefficients until the target is met. This works at moderate tolerances, but in the high-fidelity regime with block-level NRMSE from 10^-6 to 10^-4, the number of retained coefficients grows quickly and the correction stream dominates the total rate. We propose a residual-centric view: the learned residual is structurally different from the original scientific field and should be coded with a representation designed for that residual. We introduce two residual coders. LBRC is a deterministic, training-free pipeline that adaptively quantizes the learned residual to the target NRMSE and losslessly encodes the resulting integer residual using 3D Lorenzo differencing, zigzag mapping, bit-plane coding, and entropy coding. NGLR adds a causal neural predictor that outputs a normalized bias for an integer-rounded Lorenzo prediction in the same deterministic integer pipeline, reducing the entropy of the remaining residual code while preserving deterministic decoding. The predictor weights are serialized and counted in the bitstream. Across E3SM, JHTDB, and ERA5 at block-level NRMSE targets from 10^-6 to 10^-4, LBRC improves compression ratio over GAE by 30-60% and is broadly competitive with SZ. NGLR adds a further 10-40% over LBRC and outperforms SZ in the evaluated high-fidelity regime. These results show that residual representations tailored to learned-compressor residuals can preserve the advantage of learned compression when global residual correction becomes rate-dominant.

Theoretical studies of machine learning models commonly consider different limiting regimes in which the learning dynamics of gradient descent becomes theoretically tractable. It is, however, desirable to have a systematically obtained picture of all qualitatively different extreme learning regimes for a particular type of models. In this paper we propose such a picture for large weight-tied linear autoencoders characterized by input and latent dimensions, initialization magnitude, and training set size. This model is nonlinear in the weights and its gradient flow does not have a general theoretical solution. We show that at the level of the formal loss-expansion hierarchy, its extreme regimes are naturally associated with faces of a triangular prism. In particular, there are five basic extreme regimes associated with the 2-faces of the prism: (1) large-data, (2) small-data, (3) mean-field, (4) narrow-latent, and (5) free. For regimes (1,2,3,4), we derive explicit expressions for both train and population limiting loss evolutions under gradient flow, obtaining very good agreement with experimental results.