Agricultural Landscapes

Nitrous oxide (N$_2$O) is the dominant ozone-depleting substance emitted in the 21st century, and the third largest contributor to anthropogenic greenhouse gases due to its high potency and long atmospheric lifetime, with more than 70% of N$_2$O emissions occurring as a result of agricultural processes. Current approaches to predicting N$_2$O flux emissions include process-based models such as DayCent and Cycles, as well as classical AI models, but the application of Physics-Informed Neural Networks (PINNs) to predicting N$_2$O flux emissions is largely underexplored. Our paper draws upon the mechanistic equations that underlie the DayCent family of process-based models to construct a rigorously derived, literature-traceable physics residual. We then build and train an MLP-based PINN on a multi-site agricultural dataset spanning four geographically distinct US agricultural sites. Across all tested values of the physics loss weighting hyperparameter $λ$, our PINN consistently and substantially outperformed uncalibrated Cycles simulation (R$^2=0.01$), with our MLP baseline achieving mean R$^2=0.411$ across ten random seeds. Physics constraints consistently degrade model performance in holdout validation, with marginal degradation at low $λ$ and significant degradation at high $λ$, but consistently improve model performance and reduce performance variability in leave-one-site-out validation. This suggests that physics constraints sacrifice in-distribution accuracy for out-of-distribution robustness, anchoring the model toward biogeochemically plausible behavior on unfamiliar soil conditions --- though cross-site generalization remains challenging, with negative R$^2$ across all seeds and $λ$ values on our geographically distinct held-out site.

Semantic segmentation in agricultural imagery is often evaluated under in-domain protocols, yet practical deployment requires robustness to appearance perturbations, limited annotations, and cross domain shift. This paper presents a diffusion-guided hybrid segmentation framework in which U-Net, DeepLabV3+, and SegFormer backbones generate coarse masks that are refined by Denoising Diffusion Probabilistic Models (DDPM), latent diffusion, or semantic-guided diffusion. The framework is evaluated through a 3x3 architectural screening study on PlantSegV3, followed by boundary-constrained optimization, perturbation-guided retraining, low-data evaluation, constrained hyperparameter screening, and controlled cross-domain adaptation. On PlantSegV3, the best selected hybrid model achieves 71.83% refined mean Intersection-over-Union (mIoU) and 26.10% refined Boundary-F1, and the selected models remain stable under substantially reduced supervision, demonstrating strong annotation efficiency. Perturbation analysis identifies grayscale conversion, fog, coarse dropout, and shadow as the most disruptive appearance shifts, and the resulting augmentation policy substantially improves robustness during retraining. The adapted models further show effective transfer to external agricultural datasets under limited target supervision, indicating that diffusion refinement and boundary-aware optimization provide transferable structural priors. Overall, the results show that carefully matched backbone-refiner pairings, combined with perturbation-aware retraining, can improve structural delineation and robustness under realistic resource and distribution constraints.

Leaf veins exhibit remarkable diversity in architecture and patterning, yet existing gene--environment association studies have primarily quantified leaf venation using a small collection of low-dimensional summary traits, thereby discarding most of the structural information contained in the original images. We propose an integrated deep learning and statistical framework. The proposed framework achieves four methodological advances. First, it represents the complete leaf vascular architecture as a whole-network image phenotype. Second, it fine-tunes the deep learning-based Edge Detection with Transformers (EDTER) model to accurately extract whole-network leaf vascular architecture from RGB images by jointly learning local and global contextual features. Third, it constructs a new annotated leaf image database by integrating edge maps generated by DiffusionEdge with the Berkeley Segmentation Database (BSDS500). Fourth, it applies Semiparametric Sparse Canonical Correlation Analysis (SSCCA) to perform variable selection and model associations between repeatedly measured high-dimensional Bivariate image responses and high-dimensional predictors while simultaneously accommodating sparse, zero-inflated data represented by edge maps through a truncated latent Gaussian copula model. Two simulation studies demonstrate the performance of the proposed framework under increasing levels of complexity. Application to a real \emph{Populus} dataset identifies three significant gene--geography interactions associated with leaf vascular architecture, providing new biological insights and establishing a broadly applicable methodological framework for high-dimensional complex image phenotypes.

Accurate yield forecasting at the individual-plant level is critical for precision agriculture and supply-chain planning, yet public datasets capturing both visual growth dynamics and per-plant measurement labels are scarce. In this paper, we introduce a novel, annotated image time-series dataset of 691 sweet pepper plants monitored over two growing seasons, comprising 4837 images with per-plant fruit counts categorized by maturity. We propose a multimodal deep learning framework that fuses high-dimensional image features, extracted using the DinoV3 encoder, with numerical count measurements. Our architecture utilizes a Long Short-Term Memory (LSTM) network to model temporal dependencies and handles irregular sampling intervals common in greenhouse monitoring. Through quantitative experiments, we demonstrate that this multimodal approach reduces RMSE over a persistence baseline by 33% and 38% in the 2022 and 2023 seasons, respectively, with a further 1.2% average gain over a measurement-only model. Furthermore, we employ Deep Ensembles and Gaussian Negative Log-Likelihood (NLL) to provide calibrated uncertainty estimates, with an Uncertainty Calibration Error (UCE) ranging from 0.39 to 0.89 depending on the cross-season evaluation direction, offering a principled confidence signal for real-world agricultural decision-making. We release the dataset and code to support reproducible research and to accelerate development of data-driven yield forecasting methods for horticultural crops.

In efforts to increase research efficiency and availability, a digital twin of our research tractor (AMX G-trac) is created, focusing especially on the CAN communication for data reading and actuation command following the ISOBUS protocol. Mevea Simulation Software is utilized as the foundation, providing the kinematic model and visuals, while Python is used to read and write CAN messages over a Kvaser CanKing virtual CAN channel. Various performance tests involving straight line and turning behavior are performed in both the digital twin simulation and in the real world to measure similarity. Results indicate that the Mevea model behaves very comparable in its lateral dynamics, often within 5-10 percent, but requires better data to fully capture the longitudinal aspects like acceleration. The final model described in this paper sets the table for a second iteration to include more tractor functions such as hydraulics and tractor-implement dynamics.

This paper presents a vision-informed grasp force prediction framework for robotic handling of date fruits. Addressing the dual challenge of high detachment forces and low bruise thresholds, we first conduct mechanical characterization on date samples to define a safe grasping envelope and quantify the relationship between fruit geometry and bioyield stress. In this work, we develop a Vision-to-Force (V2F) pipeline that combines computer vision-based segmentation, active-contour refinement, and geometric feature extraction with a physics-informed residual neural network that augments a Hertz contact equation. The resulting model maps non-contact visual descriptors and cultivar metadata to predict a safe grasp force with mean validation performance of $R^2 \approx 0.7$ across unseen cultivar groups, which is a good result given the inherent mechanical variability of biological tissue. Experimental validation using a gripper and load cell indicates that the predicted forces enable stable manipulation of different types of date fruits, with residual deformations below 1 mm and no observable damage. These results show that pre-emptive, vision-driven force estimation% can replace slow and potentially damaging tactile exploration , enabling safer robotic handling of fragile fruits.

This paper presents an innovative design and stability analysis of an underactuated robotic finger with spatial mobility, designed to enhance gripping dexterity in robotic hands. The finger architecture incorporates a revolute joint at its base, enabling passive spatial rotation that facilitates both cylindrical and spherical grasping. With only two phalanges per finger, the design simplifies kinematic complexity while supporting precision and enveloping grasps. Stability criteria, based on the moment at the finger base joint induced by contact forces, are introduced to ensure reliable object gripping and prevent ejection during manipulation. The study also examines a differential mechanism that distributes a single actuation torque across multiple fingers, allowing adaptive and coordinated motion. This mechanism enhances the hand's ability to grasp diverse object shapes with minimal pre-grasp adjustments, leveraging passivity for autonomous adaptation. Theoretical findings are experimentally validated using a fully mechanical prototype, demonstrating versatility in performing cylindrical, spherical, parallel, and enveloping grasps. The integration of underactuation-both within individual fingers and among multiple fingers-reduces mechanical complexity, cost, and control demands while preserving functional adaptability. This work advances the development of compliant robotic hands suitable for applications requiring dexterity and robustness, such as agricultural robotics, logistics, assistive technologies, and waste sorting. Future research will focus on automating actuation and refining control strategies to further improve grasp stability and precision, paving the way for autonomous manipulation in unstructured environments.

Early and accurate detection of crop stress is essential to improve agricultural productivity and ensure global food security. However, collecting a large labeled crop stress dataset is a challenging task. To address this challenge, we introduce a novel spatial-temporal stress network (STS-NET), built on a self-supervised 3D-convolutional autoencoder (3D-CAE), designed to utilize Satellite Image Time Series (SITS) data for crop stress detection. STS-NET exploits four vegetation indices: Normalized Difference Vegetation Index (NDVI), Normalized Difference Vegetation Index (GNDVI), Red-Edge Chlorophyll Index (RECI) and Normalized Difference Red-Edge Index (NDRE) obtained from high resolution Planetscope imagery to capture spatiotemporal stress patterns. The model is trained on our BSPT (Barnala Spatial-Temporal) dataset and evaluated on a real-world sugarcane dataset collected over a year from a 2.5-acre test plot located in Lakhimpur-Kheri (LK) district in Uttar Pradesh in India. STS-NET achieved a precision of 97. 98% for water stress, 85.08% for nitrogen stress, and 83.47% for combined stress. The results demonstrate the potential of STS-NET in effectively detecting stress in sugarcane crops with minimal reliance on labeled data. Furthermore, STS-NET can serve as a robust feature extractor for simpler models.

Vision-based automation is an excellent candidate for reducing manual labor in greenhouse crop production and phenotyping. However, progress is constrained by the lack of annotated training data. Recent advances in vision-based foundational models have shown promising results in zero-shot generalization to novel domains, but their performance drops in complex agricultural environments. In this work, we present a sim-to-real framework for tomato plant segmentation that combines synthetic data generation with fine-tuning of a foundation model. We model a commercial cherry tomato greenhouse and use it to generate a large-scale synthetic dataset under diverse viewpoints, lighting conditions, and plant morphology. Subsequently, we fine-tune the Segment Anything Model 3 (SAM 3) on the synthetic dataset, specializing its text-conditioned segmentation behavior for greenhouse crop organs while retaining the general visual prior that makes zero-shot transfer possible. By evaluating our framework on multiple real-world greenhouse datasets, we demonstrate that combining synthetic data with SAM 3 fine-tuning significantly improves segmentation performance and model confidence. To support community benchmarking, we publicly release the procedural model, the generated synthetic dataset, and our fine-tuned SAM 3 weights.

Remote sensing has become an increasingly valuable tool for agricultural monitoring, particularly through the use of publicly available satellite imagery. However, effectively integrating domain knowledge into machine learning methods remains challenging. This study presents a real-world example of early sugar beet harvest yield forecasting from purely optical Sentinel-2 imagery, demonstrating how a tight integration of domain knowledge and machine learning can lead to synergistic gains. We empirically find that using very small vision transformer patch sizes and all available Sentinel-2 spectral bands improves our model despite being uncommon design choices in the domain. As a practical contribution, we were able to identify a large fraction of low-yield fields in a different year early on in the growth cycle through a modified training setup and a ranking-based detection of underperforming fields.

In this manuscript we release two datasets for visual sensing of tomato plants grown in commercial-like settings and acquired using a robot. The first is BUTom21 which consists of still images and manual annotations. The second is BUTom-ST21 which consists of video-based data and semi-automated annotations through AI-based methods, referred to as pseudo-labels. In both cases, we provide pixel-level labels for the ripeness of the fruit. The aim is to provide the research community a challenging set of real-world imagery to explore methods to sense and estimate the state of tomato plants and their fruit, which is an important horticultural crop. Importantly, the spatial-temporal dataset provides individual fruit count and ripeness information enabling researchers to push the boundaries of field-based phenotyping.

Conventional robotic grippers face a significant challenge in agricultural automation: the trade-off between compliant, adaptive grasping, pressure balancing among all joints, and high load capacity, often at the cost of high energy consumption. This paper presents a novel hybrid rigid-soft gripper that integrated low-cost, membrane-based pneumatic actuators with 3D-printed dual ratchet-pawl mechanisms to simultaneously achieve shape adaptation, uniform force distribution, and energy-free self-locking. The dual-ratchet structure assembled in an offset configuration significantly increased the angular resolution of the joint locking mechanism. Key experimental results demonstrated the gripper's superior performance: a remarkable maximum load capacity of 4200 g, far exceeding that of conventional soft grippers (45-210 g); more uniform force distribution across object sizes (1.75-35.29% difference ratio) compared to a rigid gripper (56.77-66.44%), with peak contact forces remaining below surface damage thresholds; and a 50.05% reduction in total energy consumption to 42.6 J per grasp cycle, achieved by eliminating the need for continuous pneumatic pressure through the self-locking mechanism, compared to 85.28 J for a conventional soft gripper. The combination of additive manufacturing for ratchets and commercially available materials for pneumatic chambers ensured a low-cost and easily fabricated design. These findings validated that the proposed gripper successfully bridged the gap between soft compliance and rigid reliability, offering a robust and efficient solution for scalable agricultural harvesting and manipulation tasks.

Severe occlusions and deformable plant structures introduce complex contact dynamics that challenge robotic strawberry harvesting. A policy-driven reinforcement learning (RL) framework with heuristic phase coordination was developed, in which obstacle separation, fruit detachment, and placement were formulated as a sequential decision-making task. A shared interaction-aware policy generated Cartesian motions across all task phases, while lightweight heuristic logic coordinated task progression and gripper events. A shared structured observation space was used to represent target, obstacle, end-effector, and task-context information. A hierarchical architecture combined the high-level policy with low-level Cartesian impedance control for compliant interaction. To support zero-shot sim-to-real transfer, feasibility-first observation alignment and domain randomization were adopted. The policy achieved success rates of 89.7% in simulation and 82.0% in real-world experiments. As the occlusion level increased from 1 to 5, the average execution time increased from 12.99 s to 21.73 s, reflecting greater interaction complexity. These results demonstrated effective transfer of interaction-aware harvesting behaviors to a structurally different robotic platform.

This paper describes DS@GT ARC's third-place solution to the PlantCLEF 2026 challenge on multi-species plant identification in vegetation quadrat images, where systems must predict every species present in high-resolution (~3000 x 3000 pixel) plot photographs while training only on single-label images of individual plants. The pipeline is built around a fine-tuned DINOv2 ViT-L/14 classifier applied over a multi-scale tile decomposition of each quadrat, with per-tile predictions blended with a FAISS kNN retriever and post-processed by source-aware temporal fusion across repeated plot visits, a habitat-fit demotion that injects geographic and altitude priors from the training data, and a South-Western Europe geographic mask. Habitat-fit demotion and multi-scale aggregation are the largest individual contributors in the ablations. Two complementary training-centric directions, a cross-region transformer with noisy-student distillation on the LUCAS dataset and a label-as-query transformer decoder over synthetic CLS-domain pseudo-quadrats, yielded null results. An inference-time augmentation with instance-aware segmentation crops also did not improve performance. The selected submission reaches a private-leaderboard macro-F1 of 0.43902 (third place; public 0.51096); an unselected configuration of the same pipeline scored above 0.45 on the private set. Code: https://github.com/dsgt-arc/plantclef-2026.

Cotton squares are important phenotypic indicators of the early reproductive growth of cotton, and automatic field detection of cotton squares provides an important basis for cotton growth monitoring and precision cultivation management. However, early cotton square detection in complex field environments remains insufficiently explored, as cotton squares are small, frequently occluded, easily blurred, subject to illumination variations, and exhibit low contrast against surrounding cotton leaves. To address these challenges, we propose a task-oriented framework based on YOLO26m, named Cotton-SF YOLO, for cotton square detection under natural field conditions. To improve the perception of small and irregular cotton square boundaries, we introduce Dynamic Snake Convolution into the detector, enabling adaptive extraction of deformable edge features. Furthermore, a frequency-domain feature modulation module is designed by incorporating spectral enhancement into the C2f structure, which recalibrate frequency-domain representations and strengthen discriminative edge and texture cues while reducing interference from complex cotton leaf backgrounds. Trained and evaluated on our newly constructed and annotated field dataset with manually annotated cotton squares, the proposed model achieves mAP$_{50}$, mAP$_{50:95}$, and recall values of 0.8196, 0.4942, and 0.7939, improving over the baseline YOLO26m by 1.25%, 3.45%, and 2.96%, respectively. Ablation experiments and visualization demonstrate that the best performance is achieved with the complementary effects of structural and frequency cues.

Large language models are increasingly deployed in agricultural decision-support settings, yet high-stakes crop protection in smallholder agriculture requires more than output-quality benchmarks. Over a two-year design and evaluation programme, we formalise policy-constrained large language model assessment as an adaptive compute allocation problem that jointly captures safety compliance, helpfulness, operational latency, and expert supervision workload. We introduce P-EVAL (Policy-grounded Expert-calibrated VALidation protocol), a unified evaluation framework for policy-grounded decision support, evaluating the architecture on a simulated field query database consisting of 1,240 cases. The protocol is instantiated on the Pezego advisory architecture (Pezego-HITL) and evaluated in Ghana. Following offline judge calibration against gold-standard human expert decisions ($κ= 0.77$), we evaluate the architectural performance under simulated query workloads. Under P-EVAL, our memory-routed architecture improves the Policy Alignment Rate (PAR) to 0.94 and the Agronomic Utility Rate (AUR) to 0.95, while reducing P95 latency by 55% (from 28.6s to 12.9s) through a 59.6% cache reuse ratio. We also demonstrate generalisability using the open-source \texttt{Qwen3.5-9B-DeepSeek-V4-Flash} model, achieving a PAR of 0.86 and a 54.5% latency reduction (to 10.2s). To evaluate practical utility and socio-technical integration, we administer detailed questionnaires to Ghanaian Extension Services Officers ($N=30$) and smallholder farmers ($N=36$). Taken together, this work demonstrates how policy-grounded structured retrieval-augmented generation with validated-memory routing makes safety-utility-latency trade-offs explicit, offering a scalable template for trustworthy AI-driven extension in smallholder farming systems.

Selective harvesting in clustered strawberry environments is challenging because ripe fruits are often occluded by surrounding unripe fruits, making direct grasping unreliable. To address this problem, this paper proposes a hierarchical reinforcement learning framework, termed VGPA, which integrates a vision-guided decision mechanism and a Progressive Adaptive Exploration Strategy (PAES) for vision-based obstacle separation and harvesting. The task was decomposed into two sequential stages: obstacle separation and target grasping. At the high level, the vision-guided mechanism improved option selection and accelerated policy convergence. At the low level, PAES improved exploration efficiency and training stability during continuous control learning. In simulation experiments, the learned policy achieved a success rate of 96.7%. In addition, sim-to-real transfer experiments on a self-developed parallel robot showed that the proposed method achieved success rates ranging from 71.7% to 88.3%, outperforming direct picking while requiring only 1.22~s more average harvesting time. These results verified the effectiveness, generalization ability, and practical potential of the proposed method for robotic harvesting in complex clustered environments.

We present NEEDL-Bench, a microscopy detection benchmark for Swiss Needle Cast (SNC), a fungal disease of Douglas-fir trees. Douglas-fir is a keystone species of major ecological and economic importance as a softwood timber resource, and SNC affects productivity by forming sexual reproductive structures (pseudothecia) that emerge through the gas exchange pores (stomata) of the needles, thereby blocking gas exchange and compromising needle function. To date, there is no dataset for automatic computer vision detection of these structures, despite computer vision being well poised to standardize and viably scale severity measurements. To address this, we present NEEDL-Bench, a dataset of 3250 annotated images from 1082 Douglas-fir needles, annotated for both keypoints and bounding-box detectors. This dataset exhibits a challenging collection of features, including blur, poor object contrast, small objects of interest, and occlusions. To better capture both the nominal distribution of the data and the full breadth of rare structures, we present two distinct evaluation splits: either random sampling from the collected images or sequential sampling to maximize structural diversity. We evaluate multiple popular keypoint and bounding box methods for detection on this dataset as a baseline and observe a maximum F1 score of 0.8479, suggesting significant potential for gains from future development on this problem. Further, we find that larger models generally do not show commensurate gains in performance on this dataset, indicating that improvements on this problem will not come from scaling laws but rather from domain-specific inductive biases.

While visual navigation has been extensively studied in agricultural robotics, most existing systems assume daytime conditions. In fact, deploying autonomous robots at night offers significant advantages, including 24-hour crop and soil monitoring, fruit harvesting, and nocturnal pest detection. Modern vision-based systems, however, rely heavily on large-scale well-annotated image datasets, which remains challenging to obtain for nighttime operation scenarios. To address this, we propose an unsupervised image translation framework that converts daytime plant-row RGB images into near-infrared (NIR) nighttime counterparts without requiring pixel-to-pixel supervision. This enables the direct reuse of daytime semantic labels for training nighttime perception models. In particular, by incorporating a pre-trained Contrastive Language-Image Pre-training (CLIP) model, the proposed framework is designed to preserve semantic consistency during day-to-night translation. Additionally, a visibility mask is introduced to account for the limited effective range of NIR illumination in nighttime scenes. We conduct comparative evaluations with state-of-the-art image translation baselines and demonstrate higher image qualities, as supported by improved performance in downstream semantic segmentation for nighttime visual navigation. For evaluation, we utilize AgriNight--a novel dataset comprising 428 daytime and 549 nighttime images collected using night-vision-equipped mobile robots in agricultural fields and manually annotated with pixel-wise semantic labels--and introduce it as the first benchmark for nighttime agricultural visual navigation. We also perform real-time autonomous navigation experiments with a physical robot operating at night. The data and code are available at: https://github.com/mamorobel/AgriNight.

Greenhouse reinforcement learning can test climate-control ideas at a speed and scale that is difficult to achieve with crop experiments alone. For smart-greenhouse control, however, a single simulator return is not enough: a grower or control engineer also needs to know when the policy heats, enriches CO2, vents, manages humidity, deploys screens, or uses lamps.We propose a reproducible calibration-first reward audit framework that keeps named greenhouse-control reward components comparable across simulator training, facility-adapted rollouts, logged Autonomous Greenhouse Challenge records, and actuator-rule distillation. In GreenLight-Gym, the framework decomposes the scalar reward into conditional temperature, CO2, humidity and vapor-pressure-deficit, screen, and actuation-proxy terms; adapts GreenLight to the second Autonomous Greenhouse Challenge logged climate traces; and scores the same components on logged greenhouse data.

Determining agricultural potential is fundamental to sustainable land management and agricultural planning. Remote sensing data is increasingly valuable as an avenue for agricultural potential due to the cost of traditional methods (surveys, in-situ measurements, soil testing, etc). ImageCLEF AI4Agri 2026: Subtask 1 is concerned with the prediction of viticulture potential in Southern France. The DS@GT ARC's submission for Subtask 1 introduces an ensemble of U-Net and a Geospatial Foundation Model (Prithvi-2.0). Our best model achieved a $\pm$1 accuracy of 68.32 on the leaderboard, ranking 2nd among 7 teams. The implementation for this work is publicly available at https://github.com/dsgt-arc/imageclef-ai4agri-2026 .

The scalability of organic agriculture is partially limited by the labor costs associated with monitoring for pests. While drones and rovers are well-suited for agricultural monitoring from above or next to plants, many pests live on the underside of leaves or on plant stems, making them detectable only after they have caused significant damage. To enable early pest detection we present STEMbot, a miniature climbing robot system designed for autonomous navigation under plant canopies. Unlike existing climbing platforms that lack on-board perception or are restricted to unbranched vertical trunks, STEMbot integrates a fully geometric PIN-SLAM pipeline with a semantic OcTree to achieve robust localization and mapping while climbing the plant. To plan STEMbot's motion we propose a manifold-constrained A* planner along with ray-tracing goal specification to enable branch-aware traversal and the inspection of occluded targets. We validate our system through hardware experiments, demonstrating reliable traversal of stems ranging from 7-33mm and autonomous navigation across four distinct plant specimens. Quantitative evaluations show that our system achieves high-fidelity geometric reconstructions with an average Chamfer distance of less than 1cm relative to an offline photogrammetry baseline, confirming that STEMbot maintains the globally consistent odometry needed for autonomous navigation.

Agricultural supply chains are vulnerable to disruptions through linked biophysical and economic systems. We develop an AI-powered tool that integrates economic models (GTAP) with biophysical models (APSIM) to analyze supply chain shocks, enabling policymakers and market participants to assess cross-disciplinary impacts through queries and responses written in natural language.

Robotic tree-fruit harvesting is a flagship problem for agricultural automation, but progress is bottlenecked by the cost and irreproducibility of field experiments: an orchard is available only weeks a year, every tree is different, and a control error can permanently damage the crop or the plant. The tree models used in graphics and agronomy are geometrically detailed but physically inert, while the GPU-parallel simulators used in robot learning contain no plausible trees. We present OrchardBench, a physically-grounded, GPU-parallel simulation of apple-orchard trees on the Newton engine. Each tree is grown by a stochastic L-system and instantiated as a fully articulated body: branches are compliant torsional spring-dampers whose stiffness follows Euler-Bernoulli beam theory, they break at a wood modulus of rupture and fall as free hinges, and apples are independent bodies on stem tethers that detach at literature-grounded pull forces and load the branch when pulled. A moving, density-controllable foliage layer occludes the canopy as real leaves do. Every physical parameter is tied to a published source. Per-environment domain randomization makes each batched world a distinct tree, and a mobile manipulator with a wrist depth camera closes the loop with geometric fruit perception and an autonomous harvesting baseline. Careful engineering of the solver and the model lets OrchardBench run many parallel environments at interactive rates on a laptop GPU. We define the tasks and a metric suite spanning harvest completeness, throughput, and plant damage (with a per-canopy-zone breakdown), and report baseline results across foliage, fruit load, terrain, canopy zone, and parallelism. The analytic baseline succeeds on about 40% of the fruit it detects and harvests only about an eighth of the reachable fruit on a tree, leaving clear headroom for novel autonomy approaches.

Plant diseases, resulting from both biotic and abiotic stresses, cause an estimated 20-40% loss in global agricultural yield annually, resulting in economic damages exceeding USD 220 billion. Accurate and scalable stress quantification is essential for precision agriculture, yet traditional manual assessments are labour-intensive and subjective. This paper proposes a unified deep learning pipeline integrating semantic segmentation, regression-based severity estimation, and disease classification. Stress severity is categorised into four levels (Low to Very High) based on the proportion of infected leaf area. Experiments on the Apple Tree Leaf Disease Segmentation dataset (1,641 samples, six classes) evaluate four models: U-Net (MobileNetV2), SegFormer, FCN, and PSPNet. U-Net with MobileNetV2 achieves the best performance with 98.20% pixel accuracy, 0.70 mIoU, and 99.41% detection accuracy at 14.7 ms per image, making it suitable for real-time use. SegFormer performs competitively (mIoU 0.66), while FCN and PSPNet show lower spatial accuracy (approximately 0.49 mIoU). The computed severity index strongly correlates with expert annotations (r = 0.968, R^2 = 0.937), demonstrating the system's reliability for automated crop monitoring and decision support.

Quantifying plant growth dynamics from sparse longitudinal 3D observations is fundamental for agriculture and plant sciences. Yet, plants pose unique challenges: they undergo intricate non-rigid deformations, exhibit changing topology as new organs emerge, and often lack explicit temporal correspondences between consecutive data acquisitions due to newly formed tissue. Methods designed for general scenes struggle to model topology changes and asynchronous organ growth characteristic of plants. To address these challenges, we introduce GrowFields, a compositional dynamic neural field representation for organ-aware 4D plant growth modelling from point cloud time series. Our approach decomposes a plant into its constituent organs and aligns each organ into its own canonical coordinate frame, isolating intrinsic growth patterns from global plant motion. We then learn a shared continuous neural deformation field that models temporal dynamics across all organs, conditioned on learnable per-organ latent codes capturing organ identity and growth characteristics. The resulting modular yet unified representation naturally accommodates the asynchronous development of plant organs while remaining grounded in the practical setting of organ-level plant tracking. We evaluate GrowFields on growth sequences from four plant species, assessing geometric fitting and organ tracking accuracy using manually annotated leaf-tip trajectories. Results demonstrate consistent improvements in spatial precision, temporal coherence, and morphological fidelity over a range of existing representations.

High-throughput plant phenotyping generates valuable data that often remains trapped in unstructured text and isolated RGB images. To bridge this semantic gap, we propose a framework for constructing a multimodal granular Knowledge Graph (KG) to monitor genotype-phenotype interactions across time and experiments. In this work, we focus on wheat Triticum aestivum as a representative target crop to validate our methodology across complex canopy environments. Our pipeline first distills noisy field notes to extract entities and relations, dynamically constructing the KG by converting unique instances into hierarchical class entities via RDF-typing. These graph nodes are then aligned with standardized ontologies (PO, RO, WTO) using PlantDeBERTa. To visually ground the constructed graph, a Vision-Language Model paired with a wheat-segmentation ViT generates attention-based softmaps, linking specific KG entities directly to image pixels. We introduce a central observation node Plant_Obs_Id to connect these multimodal subgraphs temporally. Evaluated on 500 curated WisWheat samples using Pointing Game accuracy, Visual Word Sense Disambiguation (VWSD), and rank-based metrics, our neuro-symbolic approach successfully maps complex field observations to a structured graph. This enables automated field note auditing, temporal stress monitoring, and precise spatial trait localization for wheat breeders.

3D plant phenotyping is notoriously known to be procedure-complicated and of low throughput due to the extensive multi-view imaging, the fragile 3D reconstruction pipeline, and the additional cost from reconstructed geometry to phenotypic extraction. These limitations are further amplified in low-cost data acquisition, where smartphone videos or sparsely sampled multi-view images provide limited view overlap and self-occlusion. In this work, we show that the conventional 3D plant phenotyping pipeline could be streamlined and significantly accelerated with 3D Foundation Models (3DFMs), and particularly, present one of the first cross-crop 3D phenotyping frameworks powered by 3DFMs. The framework replaces COLMAP-style sparse initialization with 3DFM-based feed-forward geometric recovery, combines geometry-constrained 3D Gaussian Splatting for dense reconstruction, enables few-view reconstruction through iterative view synthesis and refinement, and converts reconstructed geometry into measurable organs through 2D-to-3D semantic transfer, metric scale recovery, and organ instance separation. We further construct a cross-crop dataset with smartphone-based image acquisition, diverse plant morphologies, and manual annotations for segmentation and phenotypic evaluation. Experiments across 26 plant sequences show that 3D Foundation Models reduce the average reconstruction time from 6.52 minutes to 1.58 seconds while maintaining high reconstruction quality and phenotyping accuracy. These results suggest a fresh technical route for high-throughput 3D plant phenotyping, from low-cost image acquisition to fast reconstruction, perception, scale recovery, and phenotypic measurement.

Agricultural advisory systems face a fundamental tension: static agronomic guidelines offer consistent, evidence-based recommendations, yet remain blind to in-season variability and dynamic uncertainties. Recent advisory systems powered by LLMs are liable for a different risk of generating recommendations that are agronomically credible but physiologically unconvincing. Agri-SAGE is a closed-loop framework designed to resolve the above two limitations by integrating retrieval-grounded multi-agent LLM reasoning with APSIM-based biophysical simulation, to generate and validate agronomic advisories. To assess this framework, we evaluate three reasoning approaches, namely Plan-and-Solve, Tree of Thoughts, and Reflexion, over a 10-year retrospective analysis. All three significantly outperform static PoP (Package-of-Practice) baselines, with Tree of Thoughts achieving impressive peak yields. At the same time, Reflexion achieves comparable agronomic outcomes at substantially lower computational cost by leveraging cross-seasonal episodic memory.

Unstructured navigational features, such as irregular planting or discontinuities, remain the primary failure mode for under-canopy agricultural robots. Existing geometric approaches often fail in these scenarios because they compress high-dimensional visual data into deterministic spatial references, effectively discarding the uncertainty and semantic context required to navigate ambiguous terrain. To address this, we present LeCropFollow, a visual navigation framework that bypasses explicit geometric modeling in favor of a learned latent representation. By integrating a self-supervised semantic heatmap extractor with TD-MPC2, a Model-Based Reinforcement Learning (MBRL) planner, our system optimizes trajectories directly within a latent manifold. The framework operates over the uncompressed heatmap signal, preserving the semantic context that geometric reductions discard. We demonstrate that this representational shift enables zero-shot transfer from simplified simulation to the physical world without fine-tuning. Extensive field experiments in late-stage corn fields show that LeCropFollow matches state-of-the-art baselines in unstructured rows but significantly outperforms them in plantation gaps, achieving a 2.4x reduction in semantic failures compared to keypoint-based methods. These results suggest that latent planning offers a robust alternative to geometric estimation for operations in heterogeneous agricultural environments. Code, models, and data available: https://felipe-tommaselli.github.io/lecropfollow .

High-throughput plant phenotyping now generates image derived datasets far faster than scientists can analyze them. At Oak Ridge National Laboratory's Advanced Plant Phenotyping Laboratory (APPL), automated stations image hundreds of plants daily across multiple remote sensing modalities; yet, trait extraction and interpretation remain manual, expert-bound, and strictly post-hoc, making analysis, not acquisition, the binding constraint on discovery. We present an end-to-end agentic AI framework that turns the facility from a data factory into an interactive autonomous, discovery platform, where scientists partner with AI agents to accelerate time to insight. A conversational Co-Scientist Agent translates a scientist's natural-language question into a structured analysis plan, and a headless Compute Agent dispatches Vision Transformer segmentation and trait extraction on the Frontier exascale supercomputer. The two agents run in separate security and resource domains and communicate over a secure, token-authenticated streaming channel, a design that accounts for the federation, data-movement, and provenance realities cloud-native agentic frameworks ignore, ensuring end-to-end provenance is captured for every interaction. The framework turns a days- to weeks-long analysis process into an interactive loop where agents reason over results, recommend next analyses, and respond to follow-up questions in seconds.

We study three complementary techniques for training compute-efficient language models. (1) Selective supervision and per-token efficiency. Selective Ground Truth Token Training (SGT) concentrates supervision on the ~15% of output tokens that carry semantic payload. Through positive gradient coupling in position-shared transformer weights -- a token-level instance of auxiliary-task transfer -- the remaining 85% of unsupervised tokens still improve substantially, giving a 4.5x per-supervised-token efficiency (at the step-100 eval optimum, ~67% of the full-sequence loss reduction is recovered from 15% of the supervision). We prove that this improvement on unsupervised tokens is guaranteed whenever the gradient coupling coefficient gamma-bar = 0.72 is positive (Theorem 1), and show the effect is a property of natural-language structure: it collapses on shuffled text. (2) Depth compression with recurrent recovery. A 48-layer, 1B-parameter transformer is compressed to 6 layers (227M) by averaging adjacent layers and restored through learned recurrent unrolling. With 34 effective recurrent layers it reaches a held-out loss of 2.934, within measurement noise of a 566M dense model at 2.926 -- a 2.5x reduction in parameters. (3) Fusion of compressed experts. Assembling several compressed models as a Mixture of Efficient Experts (MoEE) with multi-token prediction improves over each single expert at comparable active parameters: a 2-expert MoEE reaches loss 2.789 versus 2.926 for the best single compressed model. We validate these techniques on CHERRY-1.8B, a Korean foundation model whose every trainable parameter derives from our own training runs. We are explicit throughout about the scope of the evidence (one model family, Korean data, loss-based metrics) and about which claims are established versus prospective.

Vegetable prices in Sri Lanka are highly volatile because the market is largely import-isolated, so supply disruptions quickly drive prices up. This study develops a machine learning framework to forecast such volatility by incorporating supply-chain-aware features and explicitly modelling the country's two cultivation seasons, Maha (October-April) and Yala (May-September). An integrated dataset was constructed by combining retail and farmer-gate prices with origin-aligned weather variables, diesel costs, and exchange rates across 12 vegetable varieties and 14 market centres from 2013 to 2019. A gradient-boosted ensemble model (XGBoost and LightGBM) was trained and optimised using Optuna, and unified and season-specific configurations were compared. Results show that season-specific models improve within-season fit, with the Yala-specific model achieving the highest R2 of 0.9420 (95% CI [0.690, 1.000]), while the unified model delivers the best overall predictive accuracy of 90.84% (95% CI [88.34%, 91.52%]) and an R2 of 0.9281 (95% CI [0.760, 1.000]). Notably, the unified model maintains 85.96% accuracy on a completely unseen 2024 hyperinflationary period without retraining, successfully tracking major price surges. These findings suggest that agricultural price movements in import-constrained markets are meaningfully predictable when models capture supply-chain dynamics, offering practical value for early warning and decision making by farmers, traders, and policymakers. Existing studies on Sri Lankan vegetable prices are confined to Autoregressive Integrated Moving Average (ARIMA) and Generalized Autoregressive Conditional Heteroskedasticity (GARCH) applied to single markets, with no supply-chain features, seasonal segmentation, or cross-regime validation.

We present KrishokChat, the first citation-grounded Bengali agricultural instruction-tuning dataset for crop advisory in low-resource settings. We establish a foundation of 290 hierarchical Knowledge Nodes, extracting disease symptoms, management practices, chemical dosages, and verbatim citations from 129 domain-filtered agricultural manuals. Every training instance inherits a verified citation header, guaranteeing 100% citation provenance. Using a Partitioned Seed Generation Matrix, these nodes are expanded into 139,200 supervised fine-tuning pairs, and augmented with 5,300 chemical safety and 1,000 adversarial safety instances, yielding 145,500 QA pairs across 18 crop categories. To evaluate real-world performance, we introduce the Farmer Benchmark, comprising 1,001 authentic farmer queries curated from field surveys and digital portals. Empirical evaluation on Gemma-4-E2B reveals that while fine-tuning on KrishokChat vastly improves structured formatting, standalone models still struggle with exact chemical dosage generalization. This highlights the dataset's true value as a verified knowledge base for retrieval-augmented generation (RAG) rather than mere parametric memorization. All data, code, and benchmarks are released under CC-BY-4.0.

General-purpose large language models (LLMs) have demonstrated strong abilities in opendomain question answering, information extraction, and text generation. Agricultural applications, however, are domain-specific, region-dependent, time-sensitive, and safety-critical. Without data governance, expert evaluation, and evidence constraints, an agricultural assistant mayproduce unreliable advice on crop diseases, pesticide use, fertilization, or policy interpretation.To avoid presenting unverified simulated numbers as real experimental findings, this paper doesnot report any model-performance claims that have not been produced by an actual training runand expert evaluation. Instead, we propose AgriTune-R, a reproducible and auditable frameworkfor adapting general-purpose LLMs to agricultural tasks. The framework selects the publiclyverifiable Qwen3-8B model as the recommended base model and integrates agricultural datagovernance, instruction construction, LoRA/QLoRA parameter-efficient fine-tuning, retrievalaugmented generation, expert evaluation, and safety control for high-risk questions. The contributions are: (1) a structured workflow for agricultural LLM adaptation; (2) an evaluationprotocol for agricultural knowledge QA, pest and disease consultation, cultivation management,and policy explanation; (3) an expert-review rubric combining factuality, safety, evidence consistency, and uncertainty expression; and (4) a clear separation between protocol design andempirical conclusions, providing an executable baseline for future empirical studies.

Accurate assessment of sweetness is essential for quality control in agriculture, yet conventional methods rely on destructive sampling and are difficult to scale. This thesis presents a robotic arm-based spectral sensing system for strawberry detection, localization, approach, and non-destructive sweetness estimation. The system integrates perception, calibration, and robotic control in a closed-loop pipeline. A YOLOv11s detector is adopted for real-time strawberry detection, while RGB-ToF calibration and mask-to-depth alignment are used to obtain geometrically consistent target localization. A custom eye-in-hand hand-eye calibration workflow is developed to estimate the rigid transform between gripper_link and cam_front, enabling reliable transformation of fruit targets into the robot base frame. Based on these estimates, the robot executes a waypoint-based search and an incremental closed-loop approach strategy to position the sensor at optimal working distance for sweetness sensing. Experimental results show strong end-to-end performance (88.10% success over 42 trials), with robust detection (95.24%) and successful approach execution once a target is detected (100% conditional success). Hand-eye calibration comparisons indicate that although Andreff yields the smallest translation norm in single-run results, the Park method provides better cross-sample consistency and therefore more stable downstream robot behavior. The residual failures are concentrated in the sensing stage, especially valid-region extraction for sweetness estimation under difficult depth/reflectance conditions. Overall, this work demonstrates the feasibility of integrating RGB-ToF perception, robotic manipulation, and non-destructive sensing for practical strawberry quality assessment, and provides a scalable baseline for future integration of learning-based policies such as Vision-Language-Action models.

Understanding which genes control which traits in an organism remains one of the central challenges in biology. Despite significant advances in data collection technology, our ability to map genes to traits is still limited. This genome-to-phenome (G2P) challenge spans several problem domains, including plant breeding, and requires methods capable of reasoning over high-dimensional, heterogeneous, and biologically structured data. Current datasets and data repositories, however, are not well-equipped for this task. Current studies do not link gene expression and trait data, and most focus on very specific traits, limiting the breadth of possible correlations. To address this gap, we present the novel Gene-Graph Regression for Arabidopsis Functional Traits (GRAFT) dataset, a curated multi-modal dataset linking gene expression profiles with phenotypic trait measurements in Arabidopsis thaliana, a model organism in plant biology. GRAFT supports tasks such as phenotype prediction and interpretable graph learning. In addition, we benchmark conventional regression and explanatory baselines, including a biologically-informed hypergraph baseline, to validate gene-trait associations. To the best of our knowledge, this is the first dataset to provide multimodal gene information and heterogeneous trait or phenotype data for the same Arabidopsis thaliana specimens. With GRAFT, we aim to foster research to accurately understand the relationship between genotypes and phenotypes using gene information, higher-order gene pairings, and trait data from multiple sources.

Accurate seedling detection during early growth stages is essential for timely replanting and effective crop management in precision agriculture. However, existing studies are mostly evaluated under relatively stable imaging conditions, such as UAV imagery or greenhouse environments, leaving robust detection under severe and spatially heterogeneous illumination in ground-based outdoor monitoring insufficiently explored. In addition, many illumination-robust detection methods rely on additional enhancement or feature-extraction modules, which increase inference-time overhead and are not tailored to seedling detection and downstream missing seedling localization. To address these gaps, we construct a new garlic seedling dataset captured using a ground-based monitoring platform under real outdoor field conditions with highly variable illumination. We further propose an illumination-robust seedling detection framework based on adversarial augmentation policy learning. The proposed method jointly optimizes a stochastic augmentation policy agent and an object detector, enabling the detector to learn robust representations under challenging visual conditions. A structural penalty is introduced to prevent unrealistic distortions while encouraging challenging augmentations during training. Extensive experiments show that the proposed approach achieves an AP$_{50}$ of 91.6%, improving the baseline by 0.9 percentage points and outperforming the previous best-performing method by 0.2 percentage points. For downstream missing seedling localization, it achieves 75.0% precision and a 67.0% F1-score, improving the baseline by 4.8 and 2.0 percentage points, respectively. These results demonstrate the effectiveness of the proposed framework for practical ground-based agricultural monitoring under complex outdoor lighting conditions without additional inference-time computational overhead.

Fruit spoilage is a significant issue in agriculture, leading to substantial economic losses. Addressing this, our study introduces a hybrid approach combining image processing and deep learning to assess fruit freshness. We developed an image processing algorithm that quantifies spoilage on a scale from 0 (fully fresh) to 100 (fully rotten). Alongside, we trained a convolutional neural network (CNN) to perform binary classification (fresh or rotten) using a large dataset of fruit images. The outcomes of both methods were synthesized using logistic regression to enhance the accuracy of freshness predictions. Subsequently, this logistic regression model was utilized to enable the image processing algorithm to provide binary classification based on its percentage output, thus eliminating the need for the CNN in real-time applications. Our approach, which does not require high computational resources, achieved real-time performance and was validated with over 90% accuracy on a dataset comprising apples and oranges. The primary limitation lies in the requirement for fruits to be isolated on a background that must be either white or transparent, suggesting future improvements could include advanced segmentation models to automate background removal. This study's results highlight the potential of integrating simple image processing techniques with machine learning to provide practical solutions in the agricultural sector.

While autonomous rovers have become indispensable to precision farming, achieving consistent operational safety remains a critical challenge. Conventional safety sensors, such as LiDAR, fail to detect obstacles positioned below the plant canopy, posing a significant risk. While camera-based supervised learning methods can detect common objects, they perform poorly when faced with obstacles that were not present in their training data. Actual unsupervised anomaly detection offers a solution by learning the normal visual patterns of an environment, but often fails for the dynamic scenes captured by a moving rover.\ This paper introduces Video Memory Transformers for Anomaly Detection (VMTAD), a fully unsupervised method designed for real-time obstacle detection in dynamic agricultural scenes. VMTAD utilizes a transformer-driven architecture augmented with a dedicated memory module. This memory module leverages temporal context by processing encoded representations of preceding frames. This approach enables the system to effectively address the dynamic context caused by the robot's movement. The model is trained using only images that represent normal operation, requiring no data labels.\ VMTAD was rigorously evaluated on the 'Grillion' agricultural rover. On a challenging rapeseed dataset, VMTAD achieved state-of-the-art performance, reaching a 0.973 detection and 0.997 segmentation Area Under the Receiver Operating Characteristic curve. A lightweight variant provides an optimal balance of high accuracy and real-time inference (14 ms), which is critical for safety, as confirmed by our analysis of the rover's total stopping distance.

Plant leaf disease classification is crucial for crop protection and precision agriculture but remains challenging under complex backgrounds, illumination variations, and severe class imbalance. Moreover, single-architecture models often fail to effectively capture both local and global representations. To address these challenges, this study proposes an adaptive soft Mixture-of-Experts (MoE) framework with cross-architectural routing that integrates EfficientNet-B0, DenseNet-121, and Swin-Tiny to exploit complementary multi-scale, local, and global features. A soft gating mechanism dynamically assigns input-dependent expert weights, while a two-stage refinement training strategy improves optimization stability and generalization. Experiments on a highly imbalanced potato leaf disease dataset achieve 91.68% recall and 92.62% F1-score, surpassing the strongest individual expert by 5.91% and 5.03%, respectively. Additional evaluations on durian and sesame leaf disease datasets yield F1-scores of 94.03% and 97.04%, demonstrating robust cross-dataset generalization and the potential of the proposed framework for reliable real-world crop health monitoring

Data scarcity is a fundamental challenge in developing AI and foundation models for agricultural robots. Existing open-source data platforms do not provide sufficient incentives for data providers so long-term data collection remains difficult. Furthermore, advances in generative AI have introduced a new challenge of verifying that collected data genuinely originates from real farm environments. We propose an ecosystem for the sustainable collection and distribution of real farm data, integrating automatic pricing driven by demand and rarity, revenue sharing that distributes earnings to farmers as an incentive to keep providing data, and data authenticity guarantees through authenticated device uploads. To demonstrate the economic sustainability for all three parties among farmers, AI companies, and the platform, we estimate the economic value that agricultural robots stand to generate.

The imperative to develop more sustainable agriculture demands a transition from isolated automation toward the deployment of multi-robot systems (MRS) in agrifood environments. However, Mediterranean greenhouse settings-characterized by narrow corridors, dense biomass, and structural metallic interference-pose significant challenges for robust and scalable communication between agents. Traditional robotic frameworks, such as ROS 2, frequently encounter node discovery issues and latency spikes due to dynamic obstacles, dense foliage, and other characteristic greenhouse elements, creating a critical bottleneck for real-time coordination. This paper proposes an innovative cloud-based hybrid architecture that establishes a two-way communication bridge between ROS 2, acting as an edge computing platform, and iVeg as a Decision Support System (DSS), using MQTT and the European FIWARE platform. The proposed framework enables seamless interoperability between fleets of multiple robots in environments with communication constraints, facilitating the synchronised exchange of high-level telemetry, point cloud data and farmer identification for collaboration, amongst other critical data. The architecture was validated in a high-fidelity simulation environment and subsequently tested in a real-world greenhouse scenario, demonstrating its ability to maintain persistent connectivity and data integrity under adverse network conditions. The results indicate that the integration of MQTT effectively eliminates information silos, providing a scalable and decentralised solution for managing complex robotic missions, which are executed locally via Edge Computing. This work sets a new methodological precedent for the concept of Greenhouse Models as a Service (GMaaS), bridging the gap between low-level robotic control and high-level, cloud-based IoT decision-making.

Commercial greenhouse cucumber production is graded by fruit length, which drives harvest scheduling, labour allocation, and logistics. Manual measurement with thread or caliper is accurate but infeasible at commercial scale. This paper presents CucumberVision, a non-contact length estimation framework using an Intel RealSense D435 RGB-D camera. A YOLO26n instance segmentation model locates cucumbers, and SAM (ViT-B backbone) refines each detection to a pixel-precise mask. Five methods are evaluated under matched conditions: (M1) a dominant-axis skeleton scan-line baseline; (M2) PCA on the bounding-box depth point cloud; (M3) SAM mask with medial-axis skeletonisation; (M4) a hybrid keypoint-guided approach using a YOLO26-pose model predicting five anatomical landmarks (KP0--KP4) with piecewise 3D arc-length; and (M5) a novel medial arc spline method fitting a cubic spline through the 3D medial axis of the SAM mask and computing arc length by trapezoidal integration -- the first such application to elongated vegetable measurement. All methods share five-frame burst depth averaging, colour-stream intrinsic alignment, and adaptive method selection with cascading fallbacks ensuring 100% coverage. A benchmark of 48 captures across seven cucumbers in three size categories (small ~8 cm, medium ~13 cm, large ~25 cm) with thread-based ground truth establishes a significant accuracy hierarchy: M1 (MAPE 9.68%) > M2 (5.31%) > M4 (5.51%) > M3 (5.82%) > M5 (4.13%). M5 significantly outperforms all competitors at Bonferroni-corrected alpha=0.0125. A secondary contribution is identifying a 12--18% length underestimation caused by using depth-stream rather than colour-stream intrinsics after rs.align(rs.stream.color) -- an under-reported error source. The complete system is released open source and runs in real time on a single consumer-grade GPU.

Morphological traits provide important evidence for phylogenetic reconstruction and evolutionary relationship analysis. Recent image-based approaches have introduced deep learning, particularly convolutional models, to derive morphological features from specimen images, but these methods generally rely on single-modality visual representations and do not explicitly incorporate morphological semantics. This study proposes a morphology-aware multimodal alignment framework for insect phylogenetic reconstruction. The framework combines specimen images with curated morphological descriptions by adapting a vision transformer through parameter-efficient fine-tuning and supervised contrastive learning, followed by image-text alignment in a shared latent space. The learned image embeddings are then used as continuous traits for Bayesian phylogenetic reconstruction. On the public Rove-Tree-11 dataset, comparative and ablation experiments across multiple visual backbones and feature adaptation strategies demonstrate that multimodal alignment improves topological agreement with the reference phylogeny. The results indicate that the proposed framework can derive morphology-aware visual traits for computational phylogenetic reconstruction.

Early detection of aphid infestation in crops is essential for preventing yield loss and reducing unnecessary pesticide use. Hyperspectral imaging combined with Spectral Information Divergence (SID) analysis offers a non-destructive approach for monitoring plant health; however, deep learning methods applied to hyperspectral data are often limited by small dataset sizes. In this study, a data-efficient generative adversarial network (FastGAN) was employed to augment a hyperspectral SID dataset of faba bean leaves containing healthy and aphid-infested samples. The trained generator produced 10,000 synthetic images preserving structural and spectral characteristics of real samples. Image quality was evaluated using Frechet Inception Distance (FID), demonstrating stable convergence and realistic reconstruction of leaf morphology and infestation patterns. The augmented dataset was used to train four classification architectures: VGG16, ResNet-50, EfficientNet, and Vision Transformer (ViT). Results showed that dataset augmentation significantly improved classification robustness, with performance progressively increasing from classical convolutional networks to transformer-based models. The ViT model achieved the highest accuracy and F1-scores, while EfficientNet provided strong balanced performance and ResNet-50 showed moderate improvements over VGG16. Confusion matrix analysis confirmed reduced false negatives and improved disease detection when using advanced architectures. The findings demonstrate that FastGAN-based augmentation effectively enhances hyperspectral plant disease classification and that transformer-based models provide the most reliable discrimination between healthy and infested leaves.

This study presents a method for modeling diverse plant branches by iteratively estimating material parameters to support delicate branch manipulation. Branch manipulation is necessary in agricultural robotics for plant repositioning, stabilizing, and clearing visual obstructions in dense foliage. The proposed method builds a tetrahedral branch model from point-cloud data and simulates its behavior using the finite element method. Using real observed deformation data, it iteratively estimates branch parameters and then computes an optimal path with a deformation-aware motion planner to move and stabilize branches within another robot's field of view. Across 30 trials on branches with varying geometries and material properties, the proposed method reduced the deformation energy by 35.69% while increasing the path length by 8.10% on average.

Vision foundation tools such as open-vocabulary detectors, segmentation models, and post-processing operators are powerful building blocks for computer vision, but their effectiveness depends heavily on how they are orchestrated: which tools are used, in what order, with what parameters, and under what visual conditions. Existing visual-programming agents typically generate a fixed solution pipeline, making them brittle under dense objects, occlusion, small targets, and domain shift. We introduce VTOS (Vision Tools Orchestration Search), a framework for adaptive visual tool orchestration through joint solution-observer search. VTOS co-searches executable solution programs that compose vision tools such as Grounding DINO, SAM, NMS, and slice-and-detect, together with observer programs that diagnose candidate solutions, identify failure modes, and generate actionable feedback. These observations are accumulated in a shared VisionThoughts knowledge base to guide subsequent search. We evaluate VTOS through two case studies: dense object counting on LVIS-Count and zero-shot plant-disease segmentation on PlantSeg-OOD, which stress different orchestration challenges including threshold calibration, NMS, slicing, mask refinement, and domain generalization. Across both tasks, VTOS outperforms static tool pipelines and agentic visual-programming baselines, specifically in complex settings such as dense, occluded scenes and out-of-distribution segmentation where static pipelines leave measurable headroom, rather than in standard tasks where a single well-calibrated tool already approaches its ceiling.

The Vines-DB dataset contains 1,218 original high-resolution RGB images of seven ornamental vine species collected under field conditions at the Utah Agricultural Experiment Station's Greenville Research Farm in Logan, Utah, USA. The dataset was generated from 168 individual vine plants that were transplanted in 2022 and photographed repeatedly across multiple months during the 2023 and 2024 growing seasons (July-October). Images were captured with an iPhone 16 Pro equipped with a 48 MP camera between 10:00 AM and 12:00 PM under daylight. Vines were grown on 1.2m x 2.4m trellises and photographed from a distance of 1m against black or white Styrofoam backdrops to improve contrast and reduce background noise. The dataset includes Akebia quinata, Campsis radicans, Hydrangea anomala petiolaris, Lonicera x heckrottii, Campsis x tagliabuana 'Madame Galen', Parthenocissus quinquefolia, and Wisteria floribunda. All original images were manually annotated in Roboflow by trained annotators to produce polygon-based instance segmentation masks for eight classes, including seven species and background. After preprocessing and data augmentation, the working dataset was expanded to 2,307 images for model development and evaluation. The augmented dataset was divided into 2,019 training images, 192 validation images, and 96 test images using stratified sampling to maintain balanced representation. Vines-DB supports the development and evaluation of deep learning models for multi-class instance segmentation in precision horticulture and urban ecology. The dataset enables applications such as automated canopy cover estimation, species identification, and scalable field phenotyping. In addition, repeated monthly imaging of the plants captures temporal variation in canopy development and plant appearance, increasing the dataset's utility for segmentation benchmarking under realistic field conditions.

Humanoid robots performing in-field manipulation tasks, such as robotic apple harvesting, face severe energy constraints that directly limit the number of reaching motions that can be executed per battery charge. This paper presents an end-to-end, energy-aware reinforcement learning framework for the 7-degree-of-freedom left arm of the UnitreeG1 humanoid robot, combining a physics-based, experimentally identified electrical power model with a Soft Actor-Critic (SAC) policy trained in a Pinocchio-based rigid-body dynamics simulator. The RL policy operates on an incremental joint-position action space and is trained with a Hybrid Constellation Reward that combines a four-point end-effector constellation distance with a torque-norm energy proxy; after % $5\times10^6$ training it reaches a $69.9\%$ success rate over $1\,000$ random targets in kinematic simulation, at a mean energy of \SI{98.16}{\joule} on successful episodes. Finally, on the physical UnitreeG1, the policy is validated over three independent 10-target batches, achieving a mean energy of $71.5 \pm 48.3$,J, an end-effector position error of $2.64 \pm 1.04$,cm, and an orientation error of $6.92 \pm 1.33^\circ$ -- within the \SI{4}{\centi\metre}/$8.6^\circ$ training tolerance. These results constitute a first step toward energy-aware reinforcement-learning-based arm reaching for humanoid robots.

This study proposes an overall deep learning architecture for multi-class classification of plant diseases from high-resolution leaf imagery, with a particular interest in investigating the behavior of ResNet-50 and a hybrid ResNet + Vision Transformer (ViT) design. A specially gathered image database with 15,200 training images and 3,800 validation images spanning 38 classes across multiple crops, including tomato, apple, grape etc. were subjected to preprocessing steps such as resizing, normalization, and data augmentation to enhance model robustness. Multiple architectures, including ResNet-50, MobileNetV2, and EfficientNet-B0, were trained and compared with the hybrid ResNet + ViT model. All models were fine-tuned using the AdamW optimizer and cross-entropy loss, with early stopping applied to prevent overfitting and ensure generalization. Furthermore, interpretability techniques such as Grad-CAM and saliency maps were implemented to indicate disease-relevant regions, while segmentation-based analysis was performed to identify the affected parts of a leaf. For every one of the considered architectures, ResNet-50 led to the highest accuracy of 98.74%, whereas the hybrid ResNet + ViT model achieved a competitive accuracy of 98.58%, showing that the hybrid architectures were effective in capturing both local and overall information. The experimental results showcase the promise of transformer-based models to achieve highly accurate, interpretable, and computationally efficient computer-based multi-class multi-disease classification systems, providing helpful assistance for cultivation management practices as well as for precision farming.

Early detection of plant diseases is crucial to plants and for the farmers. Plant diseases reduce fruit yield and quality, and plants are more susceptible to other stresses when they are infected. The lemon leaf disease dataset contains 1354 images. The dataset has 9 classes. Among the 9 classes only one class is for healthy leaf, and the other 8 classes are leaf diseases. The dataset was split into training (70%), testing (15%) and validation (15%) sets after comprehensive preprocessing. Two pretrained models (InceptionV3 and MobileNetV2) were applied and then combined these models using an ensemble technique to boost robustness. Ensemble models showed a promising performance of 99.27% accuracy. Adversarial Training is applied to improve models' ability and ensure reliable predictions under noisy data. Grad-CAM visualization highlights the important regions of leaf images that validate the model prediction with confidence level.

Adversarial Training (AT) improves neural network robustness, but most methods train a fixed parameter space from the start. This paper asks whether the order in which parameters become optimizable can affect the final robust solution, even when the final architecture or computation budget is controlled. We propose GRAPE, Guided Parameter-Space Evolution, a training framework for compact adversarial robustness. GRAPE combines parameter-space stabilization with progressive hidden expansion: it stabilizes robust optimization in the currently exposed space, gradually releases new optimizable dimensions, and uses an adversarial spectral utilization score to guide newly released capacity toward high-pressure modules. In contrast to fixed-structure AT, GRAPE treats robust model learning as a process of progressive parameter-space exposure and evolution. Under the standard $\ell_\infty$ threat model on CIFAR-10, with fixed-structure ResNet-18 AT as a controlled reference, GRAPE improves PGD-20 robust accuracy from 51.70% to 56.94% at a nearly matched computation budget with a FLOPs ratio of 1.009x, while reducing parameter count by about 21.4%. A sequential grow variant with the same final ResNet-18 architecture reaches 56.52% PGD-20 robust accuracy, indicating that the gain is not only due to final architecture differences but also to the parameter-space exposure path. These results suggest that guided parameter-space evolution can yield compact and robust parameter configurations under matched computation.

Globally, cotton is a highly economically beneficial crop, as the textile industry heavily depends on it. So, the precise identification and detection of cotton leaf disease is crucial for economic stability. The development goal of "CottonLeafVision" is to accurately classify and detect cotton leaf disease. With this goal, we have evaluated multiple pretrained Deep Convolutional Neural Networks, including DenseNet201, InceptionV3, and VGG19 on a publicly available cotton leaf disease image dataset. This image dataset includes seven classes, six disease classes, and one healthy class, collected under various field conditions reflecting real-world challenges. Among these pretrained models, with DenseNet201, we have achieved the highest classification accuracy of 98%. To enhance the model reliability and interpretability, we have implemented different techniques and methods such as Gradient-weighted Class Activation Mapping (Grad-CAM), occlusion sensitivity analysis and adversarial training to increase the noise resistance of the model. Finally, we have developed a prototype in order to utilize the model's capabilities on real life agriculture. This paper shows the deep learning model's capabilities to classify the disease in real-life cotton disease management situations.

Robotic apple harvesting offers a promising solution to labor shortages in commercial orchards, but low throughput and poor performance in orchard environments hinder its commercial adoption. This paper presents a modular dual-arm apple harvesting robot that uses a vertically stacked arms to enable simultaneous operation in the upper and lower zones of a single tree, simplifying platform positioning from multi-tree lateral repositioning to single-tree stops. Compared to our prior horizontal dual-arm system, the platform integrates 5 advances: (1)a foundation-model-based perception pipeline combining Grounding-DINO and EfficientViT-SAM for robust fruit localization in unstructured outdoor environments; (2)7th-order jerk-bounded trajectory generation paired with a Control Barrier Function safety filter to achieve fast yet safe arm motions; (3)a linear sweep harvesting strategy with a 10cm approach buffer and rotational detachment that improves picking reliability; (4)a temporal-logic-based dual-arm coordination policy with vision-arm async scheduling that maximizes usage of a shared vacuum source; and (5)field validation in 2 commercial orchards covering different apple varieties and tree architectures during the 2025 harvest season. Across the 1738 arm cycles collected in these field trials, the system achieved an 80.0% per-attempt success rate and a mean per-arm cycle time of 7.53s. Fruit damage assessments confirmed that 91.2% of robotically harvested fruit retained the highest USDA grade (Extra Fancy), with bruise rates between 2.4% and 4.9%. With further improvements in the picking cycle time and handling of heavy foliage occlusions, this new modular robot design holds promise for commercial harvesting of apples.

Understanding spatial distribution of fallow land is important for optimizing the food-water (FW) nexus, given fallowing's role in crop rotation and water conservation. Fallow is a low accuracy class in USDA Cropland Data Layer (CDL). Geospatial foundation model (GFM), Prithvi-EO has shown strong transferability across computer vision tasks. However, its Vision Transformer (ViT) backbone produces features at a single spatial scale that are ill-suited for the multi-scale features required by object detection heads. Existing approaches synthesise multi-scale pyramids through scaling of single stride tokens, sacrificing spatial heterogeneity, and full backbone fine-tuning is computationally prohibitive for GFMs. We evaluate a fallow detection pipeline combining two parameter-efficient fine tuning (PEFT) schemes: Low-Rank Adaptation (LoRA) and a hybrid PEFT, with three neck designs: pseudo multi-scale, Lite ViT-Adapter, and Full ViT-Adapter. Our best configuration, Lite ViT-Adapter with a one-stage head, achieves a mAP@50 of 0.9479 with the Diou loss, suggesting the effectiveness of center-aware localization for irregular fallow field detection. ViT-Adapter free one-stage detection under LoRA improves the adapter-free anchor-based approach by 6.42%, and the best configuration improves baseline adapter-free anchor-based approach by 25.70%. These results demonstrate that lightweight spatial prior fusion and selective backbone unfreezing enable Prithvi-EO to capture local fallow patterns more effectively, outperforming approaches that rely on reshaped single-stride ViT tokens.

Precision agriculture requires the estimation of plant growth stages in real-time. When the plant growth stage is known, the wastage of resources in cultivation, such as nutrients and water, is reduced as only the required resources need to be supplied. Plants at different growth stages, however, have similar morphological features, which can make autonomous growth stage estimation difficult. This paper presents two feature extraction methods for growth stage estimation: one that uses a bank of Gabor filters and morphological operations, and the other that uses pre-trained convolutional neural networks (CNNs) and transfer learning. We test these methods on a publicly available plant growth stage dataset (bccr-segset) for two species, canola and radish, grown and captured under indoor conditions. The two proposed feature extraction methods are compared, using support vector machines and boosted trees as classifiers. We find that both methods are suitable for real-time applications, and that CNN features outperform the hand-crafted features, both with regard to speed and accuracy. The best system (VGG-19 features, classified with a radial basis function support vector machine) obtained an accuracy of 98.4% for both species, processing an image in 0.08 seconds.

Robotic strawberry harvesting requires precise 6D pose estimation; however, collecting 6D pose ground truth in real agricultural fields is inherently challenging. Existing strawberry 6D pose estimation studies have therefore relied mainly on synthetic data, leaving their in-field performance unquantified. In this work, we obtain ground truth indirectly, by recovering camera poses via PnP, reconstructing each scene at metric scale, and annotating a single 3D bounding box per strawberry that is propagated across all frames, yielding, to the best of our knowledge, the first real-world 6D pose ground-truth dataset of red-stage strawberries collected at an actual strawberry farm (12,040 images). We also introduce a synthetic dataset rendered in NVIDIA Isaac Sim, featuring scene-level realism and domain randomization. Despite this improved simulation setup, models trained on synthetic data alone fail to transfer to in-field images, while introducing a small amount of real data improves both translation and rotation accuracy across all backbones. Under the monocular RGB setting evaluated here, rotation is largely recovered once real data is used, and depth is what limits pose accuracy. These baselines across backbone encoders serve as a reference for future work. The real-world dataset is publicly available at https://huggingface.co/datasets/WoojungSon/FieldStraw6D, and the data-collection pipeline is available at https://github.com/wjson2435/FieldStraw6D-pipeline.

Precise state estimation for navigation of autonomous agricultural robots is often compromised by sensor outages (GNSS/LiDAR/Visual) and high-frequency vibrations inherent in off-road environments. This paper proposes a robust navigation algorithm based on a jerk-augmented Extended Kalman Filter (EKF) integrated with a Multiple Tuning Factor (MTF) adaptation method. Unlike standard EKF approaches that assume constant measurement noise, our method dynamically adjusts the measurement covariance matrix in real-time, allowing the system to cope with sudden disturbances and sensor outliers. We evaluate the algorithm using real-world data from a Salin247 autonomous robot. Results demonstrate that jerk-augmentation combined with MTF adaptation significantly reduces 3D position Root Mean Square Error (RMSE) compared to baseline EKF models, providing superior dead-reckoning capabilities.

This paper presents a unified system designed to support precision agriculture by integrating advanced weather prediction, crop recommendation, and a question-answering tool for farmers. We propose two deep learning models -- a Transformer-based Graph Neural Network and a Spatio-Temporal Graph Convolutional Network (STGCN) -- to forecast weather conditions for the next 30 days using data from 1,359 locations in Nepal. The STGCN outperforms the Transformer-based model in accuracy (MSE ~0.011 vs. 0.013), effectively modeling both spatial and temporal dependencies in climate data. These predictions are combined with static soil properties such as pH, moisture, and organic content to generate localized crop recommendations through a scoring algorithm that matches each crop's optimal growing conditions. Additionally, we develop a Retrieval-Augmented Generation (RAG) chatbot that leverages domain-specific agricultural documents to answer farmers' questions in natural language. The entire system is deployed via a mobile application, offering real-time suggestions and conversational support. User feedback confirms the system's usability and relevance, especially in rural settings where personalized farming guidance is limited. Overall, our approach demonstrates how combining machine learning models with local agricultural data can empower farmers with actionable insights, promoting more informed decisions, better crop yields, and increased resilience to climate variability.