Congenital Heart Disease

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Period ending 2026-09-21

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233 papers

Latest in Congenital Heart Disease

Sep 21, 2026cs.AI

MedGate-Fusion: Integrating First-Encounter Semantic Narratives and Physiological Biomarkers for Prospective Stroke Risk Stratification

Prospective stroke risk stratification in primary care is challenging because early risk signals are distributed across routine biomarkers and unstructured clinical narratives. We propose MedGate-Fusion, a multi-modal gated architecture that integrates transformer-based embeddings of first-encounter narratives with ten routinely recorded risk markers. We used electronic medical record data from the Canadian Primary Care Sentinel Surveillance Network (CPCSSN). Starting from 808,921 encounter-level observations, we constructed a first-encounter cohort and retained 102,736 unique patient records with non-empty narratives and sufficient data to evaluate a five-year stroke outcome. To reduce explicit target leakage from diagnostic mentions in notes, we applied dictionary-based redaction of stroke-related terms prior to semantic encoding.
Hemn Khdr, Mohammad Noaeen, Karim Keshavjee +2
Sep 20, 2026eess.IV

ORION-CMR: On-scanner Reporting with Integrated Foundation Model for End-to-End Cardiac MRI Analysis and Interpretation

Cardiovascular magnetic resonance (CMR) provides comprehensive cardiac assessment but remains underutilized because of the complexity of acquisition, post-processing, and interpretation. Existing artificial intelligence (AI) methods address isolated tasks, limiting clinical integration. We present ORION-CMR (On-scanner Reporting with Integrated fOunda-tioN Model), the first clinically evaluated scanner-native end-to-end CMR foundation model. Pretrained on 12,896,733 CMR images from 9,258 studies, ORION-CMR performs sequence classification, ventricular function assessment, late gadolinium enhancement (LGE) detection, binary and multiclass disease classification, and local large language model-based report generation in approximately 90 seconds. The framework. was evaluated on public benchmarks and clinically validated in a multi-vendor cohort of 68 subjects with normal examinations, congenital heart disease, dilated cardiomyopathy, and myocardial infarction. ORION-CMR outperformed supervised baselines and the previously published CMR foundation model (CMR-FM), achieving state-of-the-art performance for LGE classification and scar segmentation. Clinical evaluation achieved an AUC of 0.96 for normal-versus abnormal classification and 0.88 for multiclass disease classification, while generated reports demonstrated 81.4% agreement with expert interpretation. These results demonstrate the feasibility of real-time scanner-native AI-assisted CMR analysis and automated report generation.
Omer Burak Demirel, Kelly K. Horst, Alessio Perazzolo +15
Sep 20, 2026cs.LG

TRACE: Tractable Routing Autoencoder for Clinical ECG

Deep learning has advanced automated electrocardiogram (ECG) diagnosis, but the field's most accurate models, foundation models pretrained on millions of recordings, are not decision-pathway auditable: a clinician cannot trace a diagnosis to a physiological pathway or intervene on one. We propose TRACE, a Tractable Routing Autoencoder for Clinical ECG, whose 32-dimensional clinical latent space is specified in advance from domain knowledge rather than discovered by optimization. TRACE partitions this space into perfusion, structure, and conduction subspaces, routes each to its own diagnostic head by design, regularizes the partition with an orthogonality penalty, and reconstructs the ECG through a decoder that permits latent perturbation. On PTB-XL and Georgia, TRACE exceeds unconstrained classifiers and stays ahead of an ECG foundation model pretrained on ten million recordings, evaluated by linear probe on frozen features, at roughly an eighth of the parameter count. On the nine-label CPSC2018 cohort, which carries no structural class, the framework transfers with only the routing table re-specified to a perfusion/rhythm/conduction partition. Joint probe, erasure, and perturbation analyses verify the routing contract, and perturbing the depolarization and repolarization pathways modulates the reconstructed waveform. Removing the specified partition and its orthogonality penalty costs 1.70 AUC and 11.30 macro-F1 points on PTB-XL, and 2.76 AUC and 16.92 macro-F1 points on Georgia. A capacity-matched permutation control places arbitrary assignments within 0.34 AUC points of the ontology routing and leaves macro-F1 statistically level (p=0.619): the ontology supplies decision-pathway auditability at no macro-F1 cost.
Shunbo Jia, Runze Ma, Haonan Lyu +3
Sep 17, 2026cs.CV

Should This Case Be Adapted? Prediction Fragmentation Controls Test-Time Adaptation

Episodic test-time adaptation resets a frozen segmenter to source weights M0M_0 on each case and adapts for a fixed step count. A fixed horizon conflates a cohort-level question, how far to adapt, with an irreducibly per-case one, whether this case should be adapted at all. Cohort means hide that decision: on cross-vendor cardiac MRI the mean ΔΔDice from adaptation is statistically indistinguishable from zero while 58.7% of cases are individually made worse. We quantify this harm as harmful accepted area (HA), the harmful fraction of the edited area a controller deploys. Held-out tuning gives a stronger baseline than a fixed horizon, but the budget it selects transfers on neither of the two main medical benchmarks, and no global budget can condition on the case. We show that prediction fragmentation---the disagreement geometry between M0M_0 and the adapted mask MkM_k---predicts HA with no labels or extra backward passes at decision time, comparably on three benchmarks (Spearman ρρ 0.50--0.60), at a quarter of gradient-norm's latency. A case-level router built on it cuts HA from 0.228 to 0.139 on a benchmark that took no part in its design, with the design frozen and only cut-points recalibrated there. On the cardiac benchmark the design was selected on, the router cuts HA from 0.129 to 0.013 at matched Dice and 1.10 deployed updates, against the retrospective-best budget found post hoc on evaluation labels, and reduces that 58.7% to 20.0%, an upper bound we quantify. Where the retained cases are not net-helped (as on prostate), the router still cuts HA but concedes accuracy, a boundary we report. Thresholds are fit once on a labeled split disjoint from evaluation; decisions use no labels or gradients. The template ports across architecture and domain (nnU-Net\toSegFormer, Cityscapes\toACDC) with coordinate, thresholds and per-bucket actions instantiated per domain.
Lili Wang, Jing Li, Xiaowen Sun +5
Sep 17, 2026eess.IV

The segmentation ceiling: why explicit left-ventricular masks do not improve learned ejection-fraction regression

Accurate estimation of left ventricular ejection fraction (EF) from echocardiography is central to cardiovascular care, and deep learning enables automated EF prediction from echocardiographic video. Because EF is clinically derived from left-ventricular (LV) volumes, a widely held intuition is that explicit LV segmentation should improve prediction. We introduce a quantitative criterion, the segmentation ceiling, that makes this testable: from EF as a normalized difference of end-diastolic and end-systolic volumes, we derive in closed form how per-frame segmentation area error propagates into EF error, and thus the accuracy a mask must reach before it can improve on direct regression. Using EchoNet-Dynamic, a UniFormer-S backbone, and the empirically measured within-patient error correlation, the criterion places the break-even near 10% per-frame area error, whereas a representative segmenter operates at roughly 14%, above the ceiling. Consistent with this, four strategies for injecting segmentation or area information (a predicted-mask channel, end-diastolic/end-systolic clip sampling, and per-bin and amplitude area-consistency objectives) fail to beat a raw-video baseline; ground-truth masks help only through label leakage. Input representation thus not being the limit, we identify generalization as the practical lever: weight averaging with strong augmentation attains a test R^2 of 0.806 (MAE 4.08) under a matched dense-clip protocol, comparable to an R(2+1)D baseline (0.811) while tightening the validation-to-test gap. Finally, a heteroscedastic beta-NLL formulation yields informative, well-calibrated per-prediction uncertainty, larger for clinically harder low-EF cases, where Monte-Carlo dropout does not. The segmentation ceiling gives a concrete design criterion for when mask-guided EF estimation is worthwhile, plus a simple, uncertainty-aware recipe for EF regression.
Farshid Farhadi Khouzani, Paul La Plante, Bryar Mustafa Shareef +1
Sep 16, 2026eess.IV

Mammography Foundation Models for Opportunistic Prediction of Major Adverse Cardiovascular Events

Cardiovascular disease (CVD) remains the leading cause of death among women, yet cardiovascular risk assessment often relies on clinical variables that may be missing, outdated, or unavailable in routine care. Screening mammography offers an opportunity for opportunistic cardiovascular risk stratification because it is routinely acquired and contains vascular features, including breast arterial calcifications (BAC), that are associated with cardiovascular risk and events. We evaluate whether mammography specific foundation models, originally pretrained for breast cancer-related tasks, can transfer to cardiovascular risk prediction without cardiovascular specific supervision or explicit BAC annotation. We constructed a 5-year major adverse cardiovascular event (MACE) cohort of 22,497 women linked to electronic health record outcomes, including 500 events (2.22% prevalence). The foundation models achieved AUROCs of 0.823 and 0.822 substantially exceeding an age-only model (AUROC 0.765), despite using only the screening mammogram as input, with no clinical variables. Both foundation models evaluated assigned substantially higher predicted risk to patients with radiologist-documented BAC, despite BAC never being used as a training label, and showed activation patterns consistent with vascular findings. Together, these findings suggest that mammography foundation models can recover clinically relevant cardiovascular risk information directly from mammographic pixels and suggest that screening mammography may provide an opportunistic source of cardiovascular risk information to complement conventional clinical assessment without additional imaging. Code is available in https://github.com/PauFeld/MammoCVD
Paula Feldman, Nusrat Binta Nizam, Sunwoo Kwak +3
Sep 15, 2026cs.CV

Beyond In-Distribution Metrics: A Systematic Out-of-Distribution Evaluation of Congenital Heart Disease Segmentation

Congenital heart disease (CHD) diagnosis and surgical planning often require patient-specific 3D anatomical models, but manual segmentation is labor-intensive, particularly in complex anatomies. Although deep-learning methods can automate this process, they are typically evaluated in-distribution, despite clinically relevant shifts in scanner, protocol, institution, population, and imaging modality. We present, to our knowledge, the first systematic evaluation of out-of-distribution (OOD) generalization in CHD segmentation, using ImageCHD as a held-out target cohort. We compare representative segmentation architectures under combined CT and CMR training, CT-only training, self-supervised pretraining, and limited target-domain adaptation. In-distribution performance proves to be a poor indicator of cross-cohort robustness: nnU-Net achieves the highest validation Dice (0.77) but falls to 0.51 on ImageCHD, while SwinUNETR generalizes substantially better, reaching 0.67 Dice. MAE and JEPA pretraining provide only modest additional benefit, suggesting that architecture contributes more to robustness than the tested pretraining strategies in this setting. When limited target-domain supervision is introduced, all SwinUNETR variants exceed 0.76 Dice with only 11 labeled ImageCHD cases. These findings demonstrate that conventional in-distribution evaluation can obscure clinically important generalization failures and support explicit cross-dataset testing as a key component of CHD segmentation evaluation.
Aniketh Vijesh, Shrisharanyan Vasu, Abhijit Ramesh +5
Sep 15, 2026cs.LG

Decoder Design Matters for ECG Delineation

Electrocardiogram (ECG) delineation identifies the boundaries of P waves, QRS complexes, and T waves, providing structural annotations that can guide AI models in learning to interpret ECGs. However, training accurate delineation models requires manual annotations that are scarce and time-consuming to obtain. Recent work addresses this limitation through semi-supervised learning (SSL), but the design of the architecture, particularly the decoder, has received less attention. To this end, we propose R-U-Net, an ECG delineation model that pairs a ResNet-18 encoder with a U-Net decoder. On SemiSegECG, R-U-Net outperforms the strongest evaluated ResNet-18 + fully convolutional network (FCN) head baseline in each of the 16 in-domain settings by 3.3-13.0 mIoU and achieves 82.6 mIoU in the cross-domain setting, an improvement of 8.1 mIoU. Controlled ablations show that decoder design contributes more to performance gains than the evaluated SSL methods, motivating further exploration of architectures for ECG delineation. All code is open-source at github.com/ELM-Research/ECG-Delineation.
Joseph Scharpf, William Han, Chaojing Duan +3
Sep 14, 2026eess.SP

Bridging the Gap in ECG-Based Emotion Recognition: A Unified Evaluation of Deep Learning Models

Deep learning has led to numerous proposed architectures for Automated Emotion Recognition (AER) from electrocardiogram (ECG) data, but inconsistencies in preprocessing, training, and evaluation make direct comparisons difficult. Most studies train and validate models on individual datasets collected under homogeneous conditions, limiting variability and raising concerns about generalizability. Cross-dataset validation is sometimes used but primarily assesses model adaptability rather than true generalization. This study presents a comparative analysis of prominent deep learning architectures in AER, emphasizing model generalization over dataset adaptability. To enable this benchmark, we introduce two open-source frameworks: Affective Research on Representations and Classifications (ARRC), a standardized benchmarking toolkit, and Affective Research Dataset Toolkit (ARDT), a framework for inter-dataset training and validation. Using ARDT, we consolidate three publicly available AER datasets, CUADS, ASCERTAIN, and DREAMER, into a single dataset, increasing variability in sensor types, recording conditions, and participant demographics. We then use ARRC to evaluate three widely studied deep learning models and two CNN baselines through hyperparameter optimization and 10-fold cross-validation. Our findings provide insights into the trade-offs between classification accuracy and model complexity, establishing a reproducible benchmark for AER research. All source code for ARRC, ARDT, and model evaluation is publicly available to ensure transparency and facilitate further research.
Timothy C Sweeney-Fanelli, Ajan Ahmed, Masudul Imtiaz
Sep 14, 2026cs.LG

Optimizing for the decision not the prediction: an exploration of Smooth Net Benefit as a training objective

Objective Prediction models are commonly trained using objectives such as Bernoulli negative log-likelihood (NLL), although downstream clinical decisions may depend on specific risk thresholds. We introduce Smooth Net Benefit (σ\sigmaNB), a differentiable approximation of Net Benefit designed to align model training with threshold-specific clinical utility. Materials and Methods We evaluated σ\sigmaNB as a training objective for logistic regression, generalized additive models (GAMs), and XGBoost with three Hessian implementations. Experiments used the Framingham cardiovascular risk dataset and 44 TabZilla datasets comprising 72 dataset-threshold combinations. Results σ\sigmaNB training did not consistently improve Net Benefit in Framingham. Across the TabZilla benchmark, mean standardized Net Benefit for logistic regression increased from 0.5669 with NLL to 0.5765 with σ\sigmaNB (mean difference 0.0096, 95% CI -0.0001 to 0.0193). For GAMs, mean standardized Net Benefit decreased from 0.5921 to 0.5625 (mean difference -0.0296, 95% CI -0.0721 to 0.0129). For XGBoost, NLL achieved 0.6745 compared with 0.6723--0.6735 across σ\sigmaNB implementations. In logistic regression, σ\sigmaNB gains were positively associated with the performance advantage of XGBoost over NLL-trained logistic regression. Discussion The effect of σ\sigmaNB was context dependent, with modest gains concentrated in logistic regression and little benefit for more flexible model classes. This suggests that decision-focused optimization may be most useful when limited model flexibility leaves greater scope for improvement. Conclusion Our results do not support σ\sigmaNB as a general replacement for NLL training, but support further investigation of decision-focused objectives in settings where conventional likelihood-based training may not adequately capture decision-relevant structure.
Koen M. F. Gorgels, Lasai Barreñada, Maarten van Smeden +3
Sep 14, 2026physics.med-ph

Impact of Multiple Non-Invasive Biosignals on Cardiovascular Biomarker Estimation via Simulation-Based Inference

As the population ages, the number of patients with cardiovascular diseases continues to increase, highlighting the need for early detection before progression to severe and irreversible functional decline. Consequently, estimating cardiovascular biomarkers from non-invasive biosignals, such as photoplethysmography (PPG) and arterial pressure wave (APW) signals, has attracted increasing attention. These signals can be measured using wearable and cuff-type devices. Previous studies have used PPG and APW signals to estimate cardiovascular biomarkers. However, these signals exhibit strong similarities in both the temporal and frequency domains and primarily reflect peripheral and arterial pulse waveforms. Therefore, they may provide limited information about cardiac mechanical function. In contrast, the quantitative impact of additional biosignals, such as ballistocardiography (BCG), which reflect the body's minute mechanical responses to cardiac ejection, remains unclear. In this study, we generated synthetic PPG, APW, and BCG signals from a unified whole-body cardiovascular circulation model and evaluated the complementary contribution of BCG to probabilistic cardiovascular biomarker estimation. We estimated posterior distributions of cardiovascular biomarkers using neural posterior estimation and simulation-based inference. The results showed that adding BCG signals significantly improved estimation performance. Furthermore, even in ill-posed cases where PPG and APW alone produced multimodal posterior distributions, adding BCG yielded unimodal posterior distributions. These findings provide fundamental insights into signal selection for estimating cardiovascular dynamics.
Shusaku Maeda, Masahiro Nakano, Tomoharu Iwata +3
Sep 14, 2026cs.LG

Certified AI Triage of ICU Alarms

In the VTaC benchmark 71% of ventricular-tachycardia alarms are false, but silencing a real one can delay recognition of a dangerous arrhythmia. We reframe alarm reduction as three-way triage (retain, suppress, or defer) and bound the decision this analysis treats as harmful: among suppressed alarms, the fraction that were genuine stays below a user-set budget with 95% confidence, under i.i.d. event sampling. Alarms sharing a waveform record are dependent, so the clustered analysis is a sensitivity check. On the official split a 5% budget certifies in all three seeds, suppressing 74.8% of false alarms while silencing 1.5% of genuine ones, at AUROC 0.953 and Challenge Score 83.33, numerically comparable to the strongest of the eleven published systems. Our central finding measures what multiplicity costs: the correction charges for every candidate, so a finer grid can certify strictly less. Under held-out calibration the 885-cell grid we declared certifies 1 of 15 fold-runs, while choosing the grid on a separate selection partition certifies 8. We project the calibration volume each budget needs, making an uncertifiable budget a design parameter. Finally, adding a learned reliability dimension to the policy grid did not sharpen the certified frontier.
Mohammed Sameer Syed, Rozhin Yasaei
Sep 14, 2026cs.AI

Reading the Whole Heart: Latent-Attention Masked Autoencoders for Multimodal Cardiac Representation Learning

Cardiovascular diagnosis rests on integrating complementary modalities, like ECG, echocardiography, chest radiographs, and clinical variables, each capturing distinct but correlated aspects of cardiac physiology. Yet most medical foundation models remain modality-specific, combining modalities only for finetuning or post-training. This discards the cross-modal evidence clinicians naturally integrate and ignores the structure within each modality. We introduce Latent-Attention Masked Autoencoders (LAMAE), a multimodal, structure-aware masked autoencoder that jointly learns patient-level representations during self-supervised pretraining. Rather than fusing modalities post hoc, LAMAE exchanges information directly in the latent space through a shared latent-attention module operating over a study-view-entity hierarchy, enabling aggregation of variable observations and graceful handling of missing modalities. Pretrained on over 1.2 million MIMIC-IV hospital stays, LAMAE outperforms modality-specific pretraining and strong contrastive and vision-language baselines across multimodal hospital-stay tasks, such as in-hospital mortality, ICD-10 and DRG coding, and length of stay, while remaining competitive on unimodal tasks. These gains persist even when only a single modality is available at test time, showing that modeling both intra- and inter-modal structure yields more robust, transferable representations.
Andrea Agostini, Simon Böhi, Moritz Vandenhirtz +7
Sep 14, 2026cs.CV

SV-Cine: Diagnosis-Conditioned Segmentation of Single Ventricle Physiology via Generative Data Augmentation

Single Ventricle Physiology (SVP) is a rare subtype of congenital heart disease characterized by the presence of a single functional cardiac ventricle with atypical anatomic configurations that challenge conventional image segmentation approaches. The scarcity of clinical data and the morphological diversity across SVP subtypes make the development of robust segmentation methods particularly difficult. To address these limitations, we propose a cardiac MRI segmentation framework focused on ventricular chambers and myocardium segmentation tailored for SVP. First, we introduce a data augmentation pipeline that generates synthetic 3D cardiac meshes using SDF4CHD and corresponding synthetic cardiac MRI through generative modeling. Second, we introduce SV-Cine, a diagnosis-conditioned adaptation of the foundation model CineMA that incorporates patient-level diagnostic information through Feature-wise Linear Modulation layers, enabling diagnosis-aware feature adaptation during segmentation. We evaluated the framework on an internal cohort with varying SVP subtypes. SV-Cine achieved median Dice scores of 0.89 (IQR: 0.80--0.91) for the left ventricle and 0.72 (IQR: 0.54--0.84) for the right ventricle, outperforming the strongest baseline, nnU-Net, by 0.39 Dice points on right ventricle segmentation. It also yields a median ejection fraction error of 5.55 percentage points (IQR: 3.41--7.69) for the dominant ventricle. Compared with the internal cohort, LV and myocardium segmentation performance was lower for the external cohort; whereas RV Dice scores were comparable for both cohorts. Our findings suggest that a pretrained foundation model can be adapted for highly specialized downstream tasks through usage of diagnosis priors while leveraging anatomic knowledge learned from large-scale MRI datasets during pretraining.
Lila Cunge, Yuehong Liu, Hang Xu +5
Sep 11, 2026cs.CL

Target leakage, not model class, explains reported accuracy in survey-based cardiovascular screening: a leakage-tiered audit of glass-box and tabular foundation models

Cardiovascular screening models trained on national health surveys routinely report areas under the receiver operating characteristic curve (AUROC) near 0.89. We asked whether that accuracy reflects learning or target leakage, whether tabular foundation models change the answer, and whether the properties deployment requires survive joint examination. We benchmarked ten classifiers spanning linear, tree-ensemble, neural, glass-box, and tabular foundation classes for prevalent myocardial infarction in 442,067 respondents of the 2022 Behavioral Risk Factor Surveillance System across five feature tiers of decreasing leakage risk. Each was audited for discrimination, calibration, fairness at an explicit screening threshold, conformal coverage, explanation faithfulness, and inference cost, then applied -- models and thresholds frozen -- to 430,755 respondents of 2023. Removing two post-diagnostic features cost every model 0.049-0.051 AUROC, collapsing the field into a 0.0045-wide band. The glass-box explainable boosting machine was non-inferior to every alternative within a pre-specified 0.005 margin while scoring the cohort roughly 104 times faster than the strongest foundation model. One threshold detected 75.4% of women's infarctions against 89.0% of men's; editing the model's shape functions reduced the gap to 0.010. Marginal conformal prediction gave 0.86 coverage to men and 0.82 to adults over 60; Mondrian calibration repaired every stratum. Frozen models transported within 0.002 AUROC. Reported headroom in this literature is a property of the feature set, not the learner. Transparency cost nothing measurable and made fairness repair and uncertainty conditioning directly auditable. Evaluation practice, not model capacity, is the binding constraint.
Raad Bin Tareaf, Murad Al-Rajab, Samia Loucif +2
Sep 10, 2026eess.IV

Myocardial Strain Drift Correction in Deep Learning Based Ultrasound Tracking

Myocardial strain from echocardiography is a key biomarker for cardiac function. Recent deep learning methods show strong performance for myocardial motion tracking but often lack physiological constraints, leading to temporal drift across the cardiac cycle. Consequently, tracked points may not return to their relative initial positions at the end of each cardiac cycle, producing inaccurate strain estimates and even divergence in some cases. We propose a deep learning framework that compensates for drift during myocardial tracking. We extend a state-of-the-art echocardiographic tracking method (TAS-Net) with persistent memory tokens that share information across sliding windows over full cardiac cycles. A teacher-student fine-tuning strategy on real echocardiographic data then enforces physiologically consistent cyclic motion while preserving tracking accuracy. Experiments show reduced global and regional strain drift, improved agreement with clinical references, and better test-retest reproducibility, supporting more reliable myocardial strain estimation in clinical practice.
Thierry Judge, Nicolas Duchateau, Andreas \Ostvik +6
Sep 8, 2026cs.LG

Physics-Informed Deep Learning for False Ventricular Tachycardia Alarm Reduction in the ICU

False ventricular tachycardia (VT) alarms are a leading contributor to alarm fatigue in intensive care units. We propose a deep learning framework combining a 1D SE-ResNet with ICU-realistic data augmentations and a physics-informed auxiliary reconstruction task based on the three-element Windkessel hemodynamic model, implemented as a differentiable forward simulation. By requiring the network's latent representation to produce physiologically plausible arterial pressure waveforms, artifact-driven ECG patterns are penalized while true VT remains coherent across modalities. Evaluated on the VTaC benchmark under a strict real-time protocol (10-second pre-alarm window), our method achieves a 5-point Challenge Score improvement over prior state-of-the-art. Ablation studies confirm that the physics-informed objective is the primary performance driver, providing gains in accuracy, 2x label efficiency, and more localized and clinically meaningful ECG segments.
Athanasios Papastathopoulos-Katsaros, Alexandra Stavrianidi, Zhandong Liu
Sep 8, 2026cs.LG

Leveraging Cardiac Imaging to Improve ECG-Based Detection of Chagas Disease in Resource-Constrained Settings

Chagas disease is a major cause of cardiomyopathy in Latin America. Cardiac magnetic resonance (CMR) imaging can characterize its structural abnormalities, but scanners and expert readers remain scarce in endemic regions. Electrocardiography (ECG) is inexpensive and widely available, yet structural disease must be inferred indirectly from electrical signals. We propose to transfer CMR-derived structural knowledge to ECG through contrastive pre-training. Using 63,193 paired ECG-CMR examinations from the UK Biobank, we align an ECG encoder with a clinically grounded CMR embedding space using an asymmetric InfoNCE objective. Despite seeing no Chagas cases during pre-training, the resulting representation improves ECG-based Chagas detection. Across CODE-15% and SaMi-Trop, a frozen linear probe achieves an AUROC of 0.851 and sensitivity at the top 5% of predicted risk (Top5%-TPR) of 0.427 in five-fold cross-validation, compared with 0.827 and 0.377 for an unaligned ECG-FM baseline. On the PhysioNet/CinC 2025 Challenge test set, our model obtains the highest AUROC on SaMi-Trop-3 and the best ELSA-Brasil challenge score among the three top-performing methods, indicating that imaging-supervised ECG representations can generalize to populations and settings beyond the pre-training distribution.
Laura Alvarez-Florez, Daniel Uyterlinde, Samuel Ruipérez-Campillo +3
Sep 8, 2026cs.CV

MRI-Guided Reslice-Refined Cross-Slice SDF Reconstruction of the Left Ventricle from Cardiac MRI with Sparse Axial Supervision

Reconstructing a three-dimensional left-ventricular (LV) endocardial surface from cardiac magnetic resonance (CMR) data is challenging when supervision is available on only a small number of axial slices. Through-plane geometry is weakly constrained, and automatically generated two-dimensional masks can propagate segmentation errors into the recovered shape. We present MR-RS-SDFR, a per-case implicit signed distance field (SDF) framework that reconstructs a continuous LV surface from a CMR volume and sparse axial weak masks. The method first builds a cross-slice SDF initialization from axial and longitudinal geometric cues and then refines the field using two complementary signals: MRI edge-field normal alignment, which provides an image-derived boundary cue independent of the weak masks, and differentiable reslice Dice and contour consistency, which preserve agreement with the observed planes. We evaluate three weak-mask generators -- LOO TransUNet, LOO nnU-Net, and an off-the-shelf Medical SAM3 model used without MM-WHS-specific training or fine-tuning -- and five sparsity levels from 4 to 64 axial planes. In the sparse-16 setting, final MR-RS-SDFR reconstruction reaches 0.928 Dice and 3.80mm HD95 with Medical SAM3 masks. The upstream generators do not exhibit a single common ranking across 2D and dense 3D segmentation, and nnU-Net- and Medical-SAM3-driven sparse reconstruction achieve the same mean final Dice despite different upstream error profiles. Across all three sparse-16 mask sources, MR-RS-SDFR is numerically better than protocol-matched full GHD+DVS in both Dice and HD95. Final Dice improves markedly from sparse-4 to sparse-16 and then saturates at the reported precision through sparse-64. These results support MRI-guided per-case SDF refinement as a reconstruction strategy that remains effective across weak-mask generators and supervision densities.
Quanxin Zheng, Shuai Zhao
Sep 7, 2026cs.LG

Attributing Cohen's d: Training Data Attribution for Disease-Related Effects in Normative Age Biomarkers

Normative age models are trained to predict chronological age in a nominally healthy cohort. Applied to patients, they deviate, and the gap between predicted and chronological age is read as disease risk. Here, we attribute the disease-related effect size of the age gap directly to individual training samples, rather than using a prediction-level loss as the attribution target. For Cohen's dd, the resulting closed-form influence functional, validated against leave-one-out retraining, ranks training samples by their effect on held-out case-control separation. Across four diseases and two biomarker modalities in UK Biobank, removing the 10% most influential training samples raises held-out disease-related effect size in every seed. It more than doubles the metabolomic-age effect for type-2 diabetes and raises the brain-age effect for multiple sclerosis by roughly a third. Random removal leaves effect size flat even at 50% removal, confirming the gain comes from which samples are removed, not how many. Flagged subjects carry subclinical cardiometabolic burden that diagnosis-based exclusion misses, on markers the model never sees. For type-2 diabetes, where the method gains most, the marker recovered is HbA1c, the standard measure of blood sugar control. We release pyinfluence, our influence-function package, for reproducibility and reuse.
Jakob Snel, Marc-Andre Schulz
Sep 2, 2026eess.IV

Learning from Scarce Labels: Multi-View Echocardiography for Ejection Fraction Prediction

We present, to the best of our knowledge, the first publicly available resource for predicting left ventricular ejection fraction (EF) from parasternal long-axis (PLAX) echocardiography. Because no PLAX-EF datasets previously existed, our work focuses on an innovative data generation strategy to overcome this scarcity. By leveraging a time-based correlation between clinical notes and echocardiographic videos, combined with fine-tuning view classifiers and proxy labeling, we created a labeled dataset of over 25,000 PLAX videos. This enables us to train the first reproducible PLAX EF model, achieving a mean absolute error (MAE) of 6.86%. Given that apical four-chamber (A4C) methods, the clinical standard, report MAE values of 6%-7%, our results demonstrate that EF estimation from PLAX views is both feasible and clinically relevant. This surpasses the performance of existing methods and provides a clinically relevant solution for situations where apical views may not be feasible. Going further, we demonstrate that combining PLAX and A4C predictions via simple unweighted late fusion improves both single-view baselines to a 6.37% MAE, underscoring the value of multi-view integration. To promote continued research, we release the dataset labels, trained models, and runnable demos on GitHub, Hugging Face, and Google Colab: https://github.com/Jeffrey4899/PLAX_EF_Labels_202509
Zhiyuan Gao, Dominic Yurk, Yaser S. Abu-Mostafa
Sep 1, 2026cs.CV

CMRVision: A Foundation Model for Cardiac MR Image Analysis

Cardiac magnetic resonance (CMR) imaging provides complementary information on cardiac anatomy, function, and tissue characterization across multiple sequences and views. In this work, we investigate foundation model pretraining for 2D CMR and introduce CMRVision, a CMR-specific foundation model trained using DINOv3-style self-supervised learning on a multi-center, multi-sequence cohort of 36 million CMR images. We systematically evaluate architectural and training design choices for domain-specific pretraining. CMRVision is evaluated on two downstream tasks: multi-task segmentation across cine, late gadolinium enhancement (LGE), and mapping sequences, and cine view classification. Our experiments show that CMR-specific pretraining, smaller patch sizes, and patch-level objectives consistently improve downstream performance. Across a multi-task segmentation benchmark, CMRVision achieved the strongest overall performance, outperforming prior natural-image (NI), medical-image, supervised, and CMR foundation model baselines. Improvements were modest but consistent across structures and sequences, with Dice scores ranging from 0.940-0.967 for LV and 0.855-0.905 for myocardium, and reaching 0.929 for RV, 0.920 for LA, and 0.931 for RA. The largest gains were observed for myocardium segmentation in LGE and mapping images. In a zero-shot segmentation task on unseen LGE long-axis views, the model achieved an average Dice score of 0.692, demonstrating cross-view generalization. For cine view classification, CMRVision achieved the highest average accuracy (0.906), compared to prior methods reported in the literature. These results highlight the potential of CMRVision to support robust and generalizable cardiac MRI analysis across multiple sequences and views.
Athira J. Jacob, Puneet Sharma, Daniel Rueckert
Aug 31, 2026cs.CV

LISynSeg: Data-Centric Label-to-Image Synthesis for Cross-Modality Whole-Heart Segmentation

Whole-heart segmentation (WHS) in computed tomography (CT) and magnetic resonance imaging (MRI) is affected by acquisition shifts and heterogeneous cardiac annotations. Existing WHS systems combine architectural design, transfer learning, and generic spatial or intensity augmentation. We investigate whether changes to data augmentation and training supervision can improve cross-modality WHS while the segmentation architecture is held constant. We present LISynSeg, a data-centric approach that augments real-image nnU-Net training with label-to-image synthesis. Synthetic volumes are generated from cardiac label maps using contrast and acquisition perturbations calibrated to the training cohort, then mixed with real images to retain thoracic context absent from the labels (and thus the synthesized images). We model cardiac label variation through controlled changes in myocardial wall thickness and partial supervision of uncertain vessel endpoints. On the CARE Whole-Heart benchmark, synthetic-only training performs worse than the real-image nnU-Net baseline, whereas calibrated real-synthetic training improves cross-modality segmentation without changing the architecture; the improvement is larger for MRI than for CT. The results show that modifying the training data strategy can benefit model development for heterogeneous cardiac data. Code and trained weights will be released at https://github.com/MedICL-VU/Care26_LISynSeg.
Jiacheng Wang, Ivana Isgum, Ipek Oguz
Aug 31, 2026cs.CV

MR-JEPA: A General Purpose Video Foundation Model for Cardiac MRI

Cardiac magnetic resonance imaging (CMR) produces rich sequential data such as temporal cine videos and spatial LGE/mapping stacks, yet most deep learning approaches process individual 2D slices, discarding this context. We present MR-JEPA, a self-supervised video foundation model for CMR that extends LeJEPA to 3D spatiotemporal inputs through tubelet tokenization, spatiotemporal masking augmentation, and initialization from a 2D CMR foundation model. Unlike prior CMR video models limited to cine data, MR-JEPA is pretrained on multi-sequence data (cine, LGE, mapping) from 10,505 patients across two centers without annotations. We evaluate the frozen encoder on six downstream tasks using a unified multi-view gated attention architecture: LV ejection fraction, RV ejection fraction, three myocardial strains (GLS, GCS, GRS), and four-class disease detection. MR-JEPA outperforms other compared methods on all five regression tasks, including both a domain-specific CMR model pretrained on more data with text supervision and a natural-video foundation model, achieving an LV EF MAE of 4.79% (r =0.764) and a GLS MAE of 1.87 (r=0.805), with 21-27% MAE reductions over baselines on strain tasks. For disease detection, MR-JEPA achieved a macro AUG of 0.868, remaining competitive with the domain-specific baseline despite using a fully self-supervised pretraining objective. These results demonstrate the potential of a unified video encoder for robust, multi-view utilization of diverse CMR sequences in clinical cardiac quantification and diagnosis.
Athira J. Jacob, Puneet Sharma, Dorin Comaniciu +1
Aug 31, 2026cs.CL

ECGQuest: Benchmarking and Fine-Tuning Language Models for Electrocardiography

Electrocardiogram (ECG) interpretation requires knowledge of cardiology, electrophysiology, clinical diagnosis, ECG waveforms, signal acquisition, and instrumentation. Existing language-model benchmarks, however, primarily assess broad medical knowledge or interpretation of individual ECG signals and images rather than the broader contextual knowledge required for ECG interpretation. We developed ECGQuest, a literature-grounded resource for evaluating and fine-tuning ECG-specific language models. A GPT-4o-based pipeline generated questions from 23 ECG references and Computing in Cardiology proceedings from 2003-2025. The final dataset contains 10,904 unique True/False questions paired with their negated forms (21,808 Q&A pairs). We evaluated three commercial and 20 open-source language models on a held-out test set in a zero-shot setting. Five open-source models with 7-14B parameters were fine-tuned using Low-Rank Adaptation, with BERT and BiomedBERT included as supervised encoder baselines. Generalization was assessed on ECG-related subsets of MedMCQA and MedQA converted to binary True/False questions using official answer keys. Zero-shot accuracy on ECGQuest ranged from 49.5% to 74.4%, with GPT-5 performing best. General-purpose models outperformed medically specialized models, several models showed strong True/False bias, and encoder baselines performed near chance. Fine-tuning improved all open-source models by 6.5-14.1%. Fine-tuned DeepSeek-R1-Distill-Qwen-14B reached 76.3% accuracy, while a five-model voting ensemble reached 78.5%. On MedMCQA and MedQA, fine-tuning mainly benefited weaker or class-biased models and did not consistently improve strong base models. ECGQuest provides a reproducible benchmark for contextual ECG knowledge and shows that parameter-efficient fine-tuning can make smaller language models competitive with substantially larger commercial models.
Mohammadsina Hassannia, Matthew A. Reyna, Reza Sameni
Aug 30, 2026cs.RO

MiBOT: A head-worn robot that modulates cardiovascular responses through human-like soft massage

Massage therapy is helpful for the rehabilitation of various diseases, such as headaches caused by migraines and stress. Existing robotic systems have focused on massage therapy on the torso and limbs, but performing massage motions through suitable actuation on a person's head has been a challenge. In this paper, we present MiBOT, a head-worn massage robot that actuates two soft tactors to produce touch motions mimicking human massage. A key design principle behind MiBOT is its silent actuation, which we achieve through pneumatic artificial muscles in conjunction with a controller loop to respond to contact pressure. We evaluated the effectiveness of MiBOT in a controlled study and assessed subjects' blood pressure and heart rate levels while applying MiBOT. We found that our mechanical system generated positive and conclusive quantitative outcomes that are similar to the human-administered massage, decreasing participants' mean systolic and diastolic blood pressure by 2.8 mmHg and 1.7 mmHg, respectively, as well as calming their heart rate by 8-10% on average.
Alice Mylaeus, Stephanie Vogt, Berken Utku Demirel +4
Aug 27, 2026cs.CV

Evaluator-Dependent Patient-Adaptive ECG Lead-Channel Allocation

The diagnostic value of an ECG channel depends on the model that interprets it. We test whether adaptive acquisition retains its advantage over fixed protocols when that model changes. Two policies developed with a logistic evaluator are frozen and assessed with a masked waveform ResNet1D, using exhaustive, metric-matched fixed comparators. On PTB-XL, replacing the evaluator reverses the mean adaptive advantage in negative log-likelihood and Brier score across the tested budgets, while calibration responds less uniformly. The shift persists with common fixed references and broader training-mask exposure. Training a policy against the stronger evaluator partly recovers the lost advantage. These retrospective exploratory results show that acquisition quality cannot be assessed independently of the downstream evaluator and motivate validating adaptive policies with the model intended for diagnosis.
Xiaoyang Li, Zeyan Tao
Aug 16, 2026cs.LG

Conditional Validity for Adaptive Modality Acquisition: When the Policy Chooses Its Own Calibration Group

A multimodal system may begin inference while holding only some of its inputs and may acquire the rest at a cost. With adaptive acquisition, the policy determines which inputs are ultimately observed, so we state risk control conditional on that terminal input pattern. Conditional calibration typically assumes that the grouping map is fixed independently of the calibration sample, a condition that policy-induced grouping does not satisfy. We characterize when pattern-conditional risk control remains valid and give two finite-sample constructions: threshold-free routing with calibration applied at the terminal pattern, and simultaneous validation of complete policy-pattern pairs, which lets calibration data select the deployed policy. A counterexample shows that validity proved for a calibration-independent grouping map need not transfer once the policy makes the terminal group calibration-dependent. We call the resulting method RouteCert. On a clinical electrocardiogram task with a staged, cost-ordered lead protocol, the deployed policy answers 71.2% of held-out patients, with an observed 7.4% disagreement with the cardiologist's diagnosis at 48.8% of the prespecified ordinal cost of acquiring each stage, and all three acquisition stages are validated separately. On masked multimodal benchmarks, validating pointwise at each terminal pattern holds observed worst-pattern selective risk, measured against the full-information reference decision rather than the true label, at 0.034, where a pooled design reaches 0.145 against a 0.10 cap, at a comparable answered fraction (0.350 vs 0.342); under the budget-matched simultaneous comparison, the answered fraction falls to 0.305.
Melika Baghi
Aug 13, 2026cs.LG

Intervention-Aware Clinical World Model for Post-Op Outcome Forecasting in Cardiology

Many clinical prediction models treat post-intervention outcomes as a one-step mapping from baseline measurements to a future endpoint. However, recovery after a procedure often unfolds as an irregular trajectory: clinical observations, medication changes, repeat interventions, and physiological measurements are recorded asynchronously and can change risk assessment over time. We propose an intervention-aware clinical world model that represents each patient with a structured latent state and evolves it through time-ordered post-intervention events. The model first encodes baseline imaging into a 3D spatial latent state. It then updates this state using procedural context, static covariates, elapsed time, and peri-event physiological embeddings. Follow-up imaging provides training-only supervision through a latent forecasting objective. We apply the framework to atrial fibrillation ablation. During the 90-day recovery window, irregular post-procedure records provide clinically meaningful evidence for long-term recurrence risk. In repeated internal cross-validation on DECAAF-II, our model achieves AUROC 0.756 and AUPRC 0.777 for recurrence prediction. It also achieves a scar-extent MAE of 2.971 percentage points without requiring follow-up MRI intensities at inference. The learned state supports recurrence-risk queries at different horizons and retrospective input editing of blanking-period records.
Yunsung Chung, Yingshuo Liu, Abboud F. Hassan +4
Aug 13, 2026cs.LG

CardioState-JEPA: Delay-Aware Cross-Modal Learning of a Shared Cardiac Representation

Electrocardiography (ECG), photoplethysmography (PPG), and phonocardiography (PCG) provide complementary views of the same cardiac cycle, yet existing cardiac foundation models are trained for a single sensing modality, leaving the shared physiology across sensors unexploited. We introduce CardioState-JEPA, a cardiac foundation model to learn a single shared representation jointly across ECG, PPG, and PCG, built on a physiology-aware joint-embedding predictive architecture. The model maps heterogeneous waveforms into a common token space, processes them with a single shared Transformer encoder, and learns by predicting masked latent cardiac states, placing the pretraining target on shared physiology rather than sensor-specific waveform appearance. To handle the temporal offsets between electrical, mechanical, and hemodynamic events, cross-modal prediction uses a learned delay aligner that matches signals at the corresponding cardiac time. Because synchronized multi-sensor recordings are scarce, CardioState-JEPA first learns within-modality structure from abundant unimodal data and then uses paired data to align modalities in latent cardiac time. Evaluated as a frozen encoder across 25 downstream tasks spanning ECG, PPG, and PCG, our encoder improves average PPG classification by 8.2 AUROC points, PCG murmur detection by 18.8 AUROC points, and ECG classification by 15.5 AUROC points over the best self-supervised signal baseline and matches or exceeds cardiac models trained with privileged clinical text or supervised labels on several ECG benchmarks. These results establish that heterogeneous cardiac signals can mutually supervise a single foundation model of cardiac physiology.
Hamza Shafiq, Hung Manh Pham, Bin Zhu +3
Aug 12, 2026cs.CV

A Neighborhood Attention Transformer Network for Enhanced 3D Segmentation of the Left Anterior Descending Artery

Background: Accurate segmentation of the Left Anterior Descending (LAD) artery in 3D free-breathing, non-contrast CT is critical for cardiac dose sparing in thoracic radiotherapy. The LAD is extremely small, has poor soft-tissue contrast, and varies substantially across patients; even manual contours show limited inter-observer agreement, underscoring the ambiguity of the vessel boundaries. Purpose: To develop a transformer-based framework that improves LAD delineation in low-contrast, imbalanced CT through local-global context modeling and uncertainty-guided optimization. Methods: We propose NA-UNETR, a 3D transformer-based segmentation model whose Neighborhood Attention (NA) and Dilated NA (DiNA) blocks jointly capture fine structural detail and long-range context. Given the scarcity of annotated LAD data, the model is pretrained on 1,000 CTA volumes of general coronary anatomy and fine-tuned with LoRA-based parameter-efficient adaptation on 20 free-breathing institutional CT scans. A composite Dice-Focal and Hausdorff loss, dynamically balanced via homoscedastic uncertainty, improves overlap and boundary accuracy. Results: NA-UNETR reached 45.64% Dice, 38.16 mm HD95, and 10.01 mm ASD, improving Dice by 3.10 percentage points over nnU-Net and reducing HD95 by 2.96 mm relative to Swin UNETR, with the strongest boundary accuracy among all models and improved centerline stability. On ImageCAS it achieved 79.49% Dice, 8.89 mm HD95, and 1.02 mm ASD. Ablations confirmed that residual blocks, variable kernels, and uncertainty-weighted loss each contributed. Conclusions: NA-UNETR balances local precision and global context for thin, low-contrast LAD structures, offering a computationally efficient framework for substructure-level cardiac segmentation in radiotherapy planning.
Rafi Ibn Sultan, Chengyin Li, Yiannos Demetriou +6
Aug 11, 2026cs.RO

From Self-Normal-Positioning to Omni-Directional Tracking: Real-Time Surface Modeling Enabled Probe Tilt Control for Robotic Ultrasound Imaging

Ultrasound (US) provides real-time, radiation-free imaging, but the image quality depends strongly on how the probe is oriented against the patient body. Robotic US can reduce operator workload and improve acquisition consistency; however, most existing systems focus on normal positioning, where the probe is maintained perpendicular to the local surface. This constraint is inadequate for examinations like echocardiography, where obtaining a diagnostic view requires a non-normal probe angle. Consequently, a clinically useful robotic system must sense the local surface in real-time and preserve the desired probe orientation. Here, we propose an omni-directional probe-orientation control framework that integrates RGB-D perception, local-surface modeling, and task-space orientation control. The surface model fuses multi-view point clouds and provides a quadratic estimate of the local surface. A desired imaging direction is then encoded relative to the normal, enabling the probe to track arbitrary angles. The framework was evaluated through flat-surface tracking, phantom target-angle recovery, and in-vivo tracking of an expert selected view. Results show that the mean angular tracking error was 1.06 +- 0.66 deg. The system recovered a non-normal tilt angle of up to 44.39 +- 2.59 deg relative to the surface normal, and acquired the desired heart chamber view in the phantom and in-vivo experiments.
Xihan Ma, Haichong Zhang
Aug 11, 2026cs.CV

VIDS-Seg: Towards Reliable Uncertainty Quantification in Pediatric Cardiac Ultrasound Segmentation

Reliable clinical deployment of machine learning requires models that know when they are likely to fail, particularly for subgroups underrepresented in training data. A common case is pediatric care, where models trained on adult cohorts can silently under-perform on children with no indication that something has gone wrong. As retraining with labeled pediatric data is often infeasible, detecting such failures at inference time is a critical clinical need. Building on the VIDS (Variational Inference under Distribution Shifts) framework, we introduce VIDS-Seg, which applies amortized variational inference over a lightweight prediction head to make this adaptive, OOD-aware prior tractable for dense image segmentation. We evaluate VIDS-Seg on left ventricular segmentation in echocardiography, a setting where pediatric anatomy differs systematically from the adult population most segmentation models are trained on, training on an adult cohort (EchoNet-Dynamic) and evaluating zero-shot on a pediatric cohort (EchoNet-Pediatric). Across all age strata, VIDS-Seg matches competitive baselines in segmentation accuracy while producing substantially higher spatial correspondence between predicted uncertainty and segmentation error, an advantage that persists even after applying temperature scaling to all baselines. Downstream, it yields more accurate and stable ejection fraction estimates and more reliable detection of cardiac malfunction in the infant subgroup. Our results indicate that OOD-aware uncertainty quantification can serve as a practical safety layer for deployed segmentation models, enabling detection of silent failures in underrepresented subgroups without retraining or additional labeled data.
Paul Fischer, Ece Ozkan
Aug 11, 2026eess.IV

Physics-Informed Implicit Neural Representations for Improved Myocardial Perfusion MRI Quantification

Quantifying myocardial perfusion from cardiac magnetic resonance (CMR) can be achieved by fitting tracer-kinetic models to the dynamic contrast-enhanced MR data. However, fitting the observed data with multi-compartment exchange models, which describe the evolution of the contrast agent in the tissue, to estimate perfusion parameters is a challenging inverse problem that is sensitive to noise and acquisition variability. Previously, physics-informed neural networks (PINNs) have been proposed as an alternative to conventional non-linear least squares fitting methods with promising results for quantitative perfusion CMR. In this work, we extend the previously proposed PINN framework with spatiotemporal implicit neural representations (INRs) to represent the MR signal as a continuous spatiotemporal function and to improve the accuracy, smoothness, and physical consistency of the PINN model. In realistic simulated CMR datasets, our proposed PINN with INRs demonstrates improved robustness and parameter estimation accuracy over the previously established methods. The code is available at https://github.com/q-cardIA/pinn-inr.
Christos Tsepas, Chang Yan, Maximilian Fuetterer +2
Aug 10, 2026cs.LG

Flow-based conditional cardiac anatomy generation for virtual cohorts

Cardiac digital twin research is moving from subject-specific anatomical replicas toward virtual cohorts that represent clinically relevant population subgroups. Yet access to representative imaging-derived anatomy datasets remains limited by cohort size, subgroup sparsity, and data-sharing constraints. Conditional generative models could help address this gap, but virtual cohorts are useful only if they preserve realistic, metadata-dependent anatomical variability. Existing cardiac anatomy generators largely rely on conditional variational autoencoders (cVAEs), which couple representation learning and metadata conditioning through a shared regularized latent prior. We introduce CAN-FLOW, a two-step Conditional ANatomy generation framework based on normalizing FLOWs that first learns geometry-only latent representations of diffeomorphic cardiac shape momenta and then models their sex-, age-, and body-mass-index-dependent distribution with a conditional normalizing flow. We trained CAN-FLOW on 2,208 healthy UK Biobank subjects and compared it with cVAEs across regularization strengths. CAN-FLOW generated plausible stochastic biventricular anatomies that better reproduced clinical phenotype distributions, metadata-dependent trends, subgroup variability, point-cloud coverage, and high-dimensional shape variability. Together, these results establish CAN-FLOW as a shareable framework for generating realistic, stochastically varying, metadata-conditioned biventricular anatomies for virtual cohort construction and in silico clinical trial workflows.
Konstantinos Kevopoulos, Beatrice Moscoloni, Benjamin Alheit +4
Aug 10, 2026eess.SP

Diagnosing as Cardiologists Do: ECG Agents with Doctor-Grounded Priors for Clinical Reasoning Across Diseases and Populations

Cardiologists interpret electrocardiograms by localizing waveform components, measuring rhythm and interval patterns, and translating these structured observations into diagnostic evidence. Whether this expert reading process can serve as an effective prior for ECG agents remains unclear. To address this question, we introduce LuminaECG, a clinically structured ECG reasoning framework that reformulates ECG interpretation as measurement-grounded visual reading. ECG signals are rendered on standard electrocardiographic grid paper to preserve the spatial and scale cues used in clinical reading. P-wave, QRS-complex, and T-wave boundaries are explicitly delineated, and color-coded segmentation decomposes the waveform into discrete visual measurement primitives. A general 2B vision-language backbone is then trained with low-rank supervised fine-tuning to associate these primitives with diagnostic reasoning, without architectural modification. Across open, proprietary, and ECG-specialist zero-shot baselines, LuminaECG improves both waveform measurement and diagnostic recovery. It reaches a clinically meaningful reader tier on the CODE-test benchmark, transfers across geographically diverse ECG datasets without retraining, and generates reports whose structure contains an emergent prognostic signal. These findings suggest that effective ECG agents require not only larger models, but supervision that preserves the alignment between measurable waveform evidence and clinical knowledge.
Hongxiang Gao, He-yang Xu, Yuwen Li +6
Aug 8, 2026q-bio.QM

HIPNO: Symmetry-Aware Physics-Informed Neural Operators for Noninvasive Hemodynamic Inference

Continuous hemodynamic monitoring guides treatment decisions in surgery and intensive care. However, gold-standard signals are only measured in severe cases due to risks associated with invasive measurement. In this work, we introduce HIPNO (Hemodynamic Inference via Physics-informed Neural Operators) to recover hemodynamic state from ubiquitous, non-invasive signals and expand access to advanced monitoring. HIPNO addresses a problem of scale symmetry in physics-informed hemodynamic inference, where different combinations of flow, resistance, and compliance can generate the same observed pressure. We identify the symmetry group of the observation model and parameterize the network in its quotient space. For the 3-element Windkessel model, the quotient coordinates are the compliance-normalized flow U=Q/CU=Q/C, the decay time constant τWK=R2Cτ_{WK}=R_2 C, and the characteristic-impedance coordinate κ=R1Cκ=R_1 C. Across 945499 intraoperative windows from 2562 patients, HIPNO predicts τwaveτ_{wave}, a proxy for vascular decay derived from pressure, with 32% lower error on the log scale than a population baseline while preserving mean arterial pressure accuracy. Because vascular decay and flow drive occupy separate coordinates, counterfactual perturbations produce the expected directional responses in at least 90% of windows in almost all prespecified scenarios, a separation unavailable to pressure-only baselines. The coordinates are also used as inputs to a calibration model for monitored cardiac output. Finally, the formulation identifies the external compliance or flow reference required to recover absolute physical scale.
Yunbei Pan, Jiahang Sha, Simon A. Lee +3
Aug 7, 2026cs.CV

Foundation Models Adaptation for Multi-View Multi-modal Cardiac MRI Segmentation and Direct Ejection Fraction Estimation

Foundation models have shown strong transferability in cardiac MRI (CMR), but their effectiveness for heterogeneous multi-view and multi-sequence CMR analysis remains unclear. In this work, we explore the effectiveness of fine-tuning and combining different CMR foundation models for the Universal Multi-Sequence, Multi-Center and Multi-View CMR Segmentation (CMR-Multi) Challenge. CineMA was fine-tuned for cine and late gadolinium enhancement (LGE) segmentation across short-axis and long-axis views. For direct left-ventricular ejection fraction (LVEF) estimation, we used two recent frozen CMR foundation models to extract embedding vectors that were then combined using attention-based multiple-instance learning for LVEF regression. In the challenge validation set, cine segmentation achieved Dice scores of 0.862, 0.883, and 0.902 for short-axis, two-chamber and four-chamber cine MRI, respectively. LGE segmentation achieved Dice scores between 0.621 and 0.846 across views. The direct LVEF regression model achieved an MAE of 4.96 percentage points and a Pearson correlation of 0.91. These results indicate that foundation models can be effectively adapted and combined for multi-view CMR analysis, while accurate LGE scar segmentation remains a challenging task.
Sina Amirrajab, Cian M Scannell, Volker Vehof +2
Aug 6, 2026cs.AI

ECG-LENS: Lead-Aware Clinical Context Enriched ECG Report Generation and Evaluation

Electrocardiography (ECG) is one of the most widely used non-invasive tools for diagnosing cardiovascular disease, but transforming multi-lead ECG recordings into reliable clinical reports remains challenging. Automating ECG report generation could reduce clinicians' interpretive workload, improve diagnostic efficiency, and expand access to cardiac assessment in underserved communities. Unlike image-based report-generation tasks, ECG interpretation requires the analysis of subtle temporal morphologies, followed by coherent diagnostic reasoning expressed in dense clinical terminology. Existing systems predominantly focus on classification, while current report-generation methods often produce outputs that remain inadequate for practical clinical use. To address these challenges, we propose ECG-LENS, an end-to-end ECG report-generation framework that jointly integrates multi-lead signal modeling, diagnosis-aware representations, and clinically grounded text generation. ECG-LENS combines lead-wise encoders that preserve localized waveform morphology with a global encoder that captures inter-lead dependencies. To guide report generation, we fuse signal representations with clinically enriched textual prompts that condition a GPT-2 decoder. We further introduce an ECG-specific report-preprocessing strategy that helps the model focus on clinically meaningful findings. Finally, because lexical metrics may under- or overestimate report quality, we propose F1-ECGBERT, a BERT-based, ECG-specific metric that measures agreement between diagnostic labels extracted from generated and reference reports. In-domain experiments on PTB-XL and cross-domain evaluation on MIMIC-IV-ECG show that ECG-LENS consistently outperforms state-of-the-art methods, with absolute gains of 4.0%, 6.3%, and 11.5% in METEOR, ROUGE-L, and F1-ECGBERT, respectively, over the strongest baselines.
Akanta Das, Tasinul Islam Ahon, Ahmed Mahir Sultan Rumi +3
Aug 4, 2026stat.ML

Robust Low-Tubal-Rank Tensor Completion under Cross-Concentrated Sampling

Tensor cross-concentrated sampling (t-CCS) bridges entrywise sampling and t-CUR slice-wise sampling by observing entries only within selected horizontal and lateral slices. Existing t-CCS completion methods, however, assume that the observations are free of gross corruption. In this work, we study robust recovery of a third-order low-tubal-rank tensor from partial t-CCS observations contaminated by sparse, arbitrarily large outliers. We propose Robust Iterative t-CUR (R-ItCUR), a tensor-native algorithm that partitions the sampled tensor cross into two exterior blocks and an intersection block, applies adaptive blockwise Welsch correction for outlier suppression, and updates the low-rank component through projected blockwise gradient descent. By operating directly on the sampled cross, R-ItCUR avoids reconstructing the full tensor throughout the iterations, resulting in substantial memory and computational savings. Experiments on synthetic tensors, cardiac MRI data, and three-dimensional seismic data demonstrate accurate recovery and strong robustness to sparse gross corruptions. The results further highlight the importance of explicitly exploiting the cross-concentrated sampling structure in robust tensor completion.
HanQin Cai, Longxiu Huang, Jing Qin +1
Aug 4, 2026eess.IV

Unsupervised Adversarial Domain Adaptation for Uterine layer Segmentation: From Labeled Cine to Unlabeled Dynamic EPI MRI

Uterine peristalsis is a key physiological phenomenon responsible for various functions across the menstrual cycle, intimately linked to uterine wall microstructure. Alterations in uterine motion and tissue properties are implicated in the etiology of gynecological diseases, yet these processes have been studied in isolation. We introduce a dynamic multi-echo gradient echo EPI framework for simultaneous characterization and correlation of uterine peristaltic activity and time-resolved T2* changes at 0.55T. Inherent susceptibility artifacts, reduced resolution, and burden of manual uterine layer annotation are addressed by an unsupervised adversarial domain adaptation framework, transferring segmentation knowledge from labeled cine MRI to unlabeled dynamic EPI. We implemented Unet-LSTM with multi-scale domain discriminators that exploits temporal layer dynamics. A Dice score of 0.88 and Jaccard index of 0.80 was achieved. Mean T2* values were 108ms, 76ms, and 124ms for the myometrium, junctional zone, and endometrium. A negative correlation between junctional zone area and T2* was observed in 14/39 cases, providing first insights into oxygenation patterns associated with junctional zone contraction and motion, demonstrating feasibility of assessing the interplay between contractility and dynamic T2* changes.
Smiti Tripathy, Milauni Desai, Jordina Aviles Verdera +1
Aug 4, 2026cs.LG

ConformalShift: Targeted Event Reordering Against Adaptive ECG Monitoring

Adaptive conformal prediction can recover clinically important heartbeat classes missed by a point classifier, but delayed feedback makes its decisions sensitive to event order. We introduce ConformalShift, a bounded event-reordering attack that suppresses the ventricular class for rescued events without modifying ECG waveforms, labels, classifier scores, or the event multiset. ConformalShift searches for feasible permutations of authentic preceding events that lower the ventricular threshold before a selected target is evaluated. On disjoint MIT--BIH confirmation records, the attack suppressed 66.7% of eligible targets for Extra Trees and 60.0% for HistGradientBoosting, compared with random-schedule rates of 4.4% and 12.0%, respectively. Transferred configurations also outperformed random scheduling on INCART, while reducing the displacement budget weakened the attack on both datasets. These results show that adaptive monitors in healthcare can be compromised through the timing of authentic information, even when waveforms, labels, classifier outputs, and event contents remain unchanged.
Arash Vashagh, Yasmin Vashagh
Aug 4, 2026cs.AI

FOUND-AF: Benchmarking ECG Foundation Models for Atrial Fibrillation Detection

Atrial fibrillation (AF) is the most common sustained cardiac arrhythmia and is associated with increased risks of stroke, heart failure, and mortality. Recent ECG foundation models offer transferable representations for automated AF detection. However, their relative effectiveness remains unclear because existing studies use different datasets, preprocessing procedures, classifiers, and validation protocols. This study presents FOUND-AF, a unified, leakage-controlled, and deployment-oriented benchmarking framework that evaluates the quality of pretrained ECG representations under identical experimental conditions. Nine publicly available foundation models from five families, including HuBERT-ECG, CLEF, ST-MEM, ECG-JEPA, and ECGFounder, were evaluated across four heterogeneous ECG datasets, namely AFDB, CinC2017, CPSC2021, and LTAFDB. All models were used as frozen feature extractors with standardized preprocessing, model-native resampling, a fixed XGBoost classifier, and recording-level grouped cross-validation. The evaluation included classification metrics, receiver operating characteristic analysis, paired recording-level bootstrap comparisons with Holm correction, embedding-space visualization, and computational efficiency profiling. The ECGFounder model consistently achieved the strongest overall performance across datasets while offering a favorable trade-off between accuracy, model size, inference time, and memory usage. FOUND-AF therefore provides a reproducible framework for selecting ECG foundation models and demonstrates that compact, clinically pretrained encoders can support robust and computationally efficient AF detection across heterogeneous acquisition settings.
Amirhossein Taleshinosrati, Yangyang Wang, Atitaya Phoemsuk +5
Aug 4, 2026cs.CV

When Oracle Conditioning Misleads Deployment: Conditioning-Availability Bias in Echocardiographic Segmentation

Conditional segmentation models may be trained and evaluated with auxiliary signals cleaner than those available at deployment. We study this protocol-level manifestation of shortcut learning and auxiliary-variable shift in phase-conditioned echocardiographic segmentation. The complementary gap pair measures loss on the deployable oracle-estimated pathway and probes sensitivity on the oracle-random pathway. On held-out CAMUS data, one strong-cyclic, oracle-selected run fails severely with estimated phase, while sensitivity to incorrect phase persists across three runs. On EchoNet-Dynamic, the current estimator remains usable, but random-phase testing reveals strong latent sensitivity. Deployment-aware checkpoint selection and phase perturbation reduce both gaps with little change in mean Dice. Exploratory subgroup analyses quantify variation across measured strata, and a downstream ejection fraction (EF) audit shows that recovering segmentation does not necessarily recover EF error or signed bias. Together, the gaps test whether oracle-conditioned performance survives the inference pathway actually available at deployment.
Dang P. M. Cao, Hieu D. Pham, Hieu Pham
Aug 3, 2026cs.CV

Generative Brownian Bridge Diffusion In Motion Space For Enhanced Myocardial Strain Analysis

Myocardial strain analysis of cardiac magnetic resonance (CMR) images provides an important tool for evaluating cardiac function. However, current techniques require either human-adjusted post-processing with suboptimal regional accuracy, or specialized acquisitions with limited availability. In this paper, we propose to leverage the power of generative models to synthesize high-quality motion-derived strain values from routinely acquired CMR sequences. Specifically, we develop a novel Brownian bridge diffusion model in motion space to learn the probabilistic mapping between standard CMR motion estimated from widely adopted registration methods and highly accurate motion provided by advanced strain imaging techniques. To promote the fidelity of anatomical structure in the generation process, our model is conditioned on the corresponding CMR images. We validate our method on large-scale multi-center CMR datasets including subjects of paired standard cine CMR and advanced strain imaging acquisitions. Experimental results demonstrate that our framework significantly improves the accuracy of motion prediction and strain analysis from standard CMRs compared to existing learning-based approaches. Our research represents a new paradigm for potentially developing cost-effective, clinically deployable AI tools for cardiac function assessment with enhanced strain accuracy in busy clinical workflows. Our code is publicly available at https://github.com/Rishov-MIA/Brownian-Bridge-strain-analysis.
Rishov Paul, Frederick H. Epstein, Miaomiao Zhang
Aug 1, 2026cs.CV

NISF++: Geometrically-grounded implicit representations of 3D+time cardiac function from 2D short- and long-axis MR views

Clinical acquisition in cardiac magnetic resonance (CMR) imaging involves obtaining cross-sectional planes of the heart along the radial and longitudinal directions. Despite these planes being 2D cross-sectional images of the heart, radiologists understand the 3D spatial and continuous temporal nature of the organ being imaged. The same can not be said about the conventional deep learning architectures used to process CMR images, which rely on in-plane and grid-based operations, and are hence unable to organically integrate information from all imaging planes. This paper builds upon previous work on neural implicit segmentation functions (NISF) to overcome unaddressed challenges in cardiac function modeling in the CMR domain. For a given subject, our architecture builds a shared 3D+time representations from all available acquisition planes regardless of orientation. By design, predictions along any imaging plane orientation are cross-sections of the same 3D representation, leading to spatio-temporal consistency across all slices. Moreover, our architecture makes the rotation and translation parameters of imaging planes learnable, allowing us to correct for the commonplace respiratory and patient motion between slice acquisitions under a rigid assumption. Furthermore, interpolation of intensities and segmentation can be performed in 4D at any desired resolution. We perform our study on a 120 subject sub-cohort of CMR imaging data from the UK-Biobank. Our in-plane segmentation performance is on-par with existing CMR segmentation methods and explore how the majority of failure cases arise from limitations in the ground-truth segmentation, for which our representations make predictions with better anatomical accuracy than its original training data. We also evaluate our motion-correction capabilities, displaying quantitative and qualitative improvements in slice alignment.
Nil Stolt-Ansó, Maik Dannecker, Steven Jia +2
Jul 31, 2026eess.IV

Automatic LV Localization and Short-Axis Plane Estimation from Arbitrary CMR Slice

Accurate estimation of left ventricular (LV) orientation is essential for cardiac magnetic resonance (CMR) imaging and downstream analysis. Existing methods typically formulate orientation recognition as discrete view classification or rely on multi-slice geometric intersection, limiting their ability to model continuous 3D orientation and generalize across arbitrary slices. This work introduces a novel paradigm: Joint LV localization and 3D orientation estimation from a single CMR slice. To investigate this setting, representative orientation-aware detection frameworks are adapted to the CMR domain, and their limitations are analyzed. Upon that, we propose the Polar-Coupled Circular (PCC) embedding that provides a continuous and unambiguous orientation representation to address the limitations. Meanwhile, a scalable benchmark is constructed through automatic slice sampling from volumetric CMR segmentation datasets. Extensive experiments on four datasets demonstrate strong performance, achieving an average mIoU of 86.18% and an average angle deviation of 3.39°. This study establishes a new task setting for single-slice LV orientation modeling and provides a geometry-consistent framework for spatially informed CMR analysis. Code is available at https://github.com/yuyi1005/cmr-3d-ood.
Yi Yu, Yixuan Liu, Ziyu Zhang +4
Jul 30, 2026cs.CV

Same Branches, Different Trees: A Bifurcation Connectedness Metric for Coronary Artery Segmentation and FFR-CT Decision Agreement

Fractional flow reserve derived from CT angiography (FFR-CT) simulates flow through a patient-specific vessel model, so its accuracy depends on the connectedness of the segmented tree, not only on volumetric overlap: a segmentation can reach high Dice yet sever a bifurcation, dropping the downstream subtree and reversing the treatment decision. Topology-aware losses such as clDice and Skeleton Recall act on the global centreline and can miss localised breaks. We study the Bifurcation Connectedness Score (BCS), which scores connectedness at each ground-truth bifurcation, and soft-BCS, its differentiable training surrogate. BCS captures a property of segmentation quality the standard metrics miss: it responds strongly to breaks in connectedness while staying largely unchanged under connectedness-preserving narrowing. Higher BCS accompanies closer agreement between the FFR-CT decisions a solver makes on predicted versus ground-truth geometry, most clearly in severe disease (OR 2.16, CI [1.23, 4.18]). Both decisions come from the same solver, so this reflects geometric, not clinical, fidelity. In training, soft-BCS and Skeleton Recall recover the same branches but build different trees. Recovering branches and keeping them connected are separable properties, so we recommend reporting a measure of each.
Maame Owusu-Ansah, Kelvin Lee, Dr Vinod Venugopal +3
Jul 28, 2026cs.AI

Loss Invariance Determines What Concept Layers Encode: Volume Grounding in Echocardiography

Objective: Concept bottleneck models route prediction through interpretable intermediate variables, and their validity is normally judged by how accurately those variables are predicted. We ask whether that judgement is sufficient, using left ventricular volumes as the concepts underlying ejection fraction estimation from echocardiographic video. Methods: A video transformer encoder was trained on a publicly available echocardiography dataset. End-systolic and end-diastolic volumes formed a concept layer from which ejection fraction was computed analytically, with no residual path to the output. We compared training under an ejection fraction objective alone against training with additional supervision of the volumes in millilitres, and evaluated both on 1276 held-out studies. Results: The concept bottleneck did not increase ejection fraction error relative to direct regression, at 6.89 against 7.13 mean absolute error. Without volume supervision, however, the spread of predicted volumes collapsed to 0.1 millilitres against reference spreads of 35.7 and 45.7 millilitres, while correlation was partly preserved. We show that this follows from an invariance property of the objective: ejection fraction is a ratio and is unchanged when both volumes are rescaled, so the loss determines the concept layer only up to scale. Supervision in absolute units reduced volume error from 89.8 to 25.8 millilitres at a cost of 0.4 in ejection fraction error. Conclusion: Concept accuracy alone can conceal a concept layer that carries no physical scale. Significance: Interpretable intermediate variables in clinical models should be validated against the invariance structure of the training objective, not only against prediction accuracy.
Hyunkyung Han, Min Jung Kim
Jul 28, 2026cs.AI

Cardiologent: Multi-Agent Clinical Decision Support for Patient-Level Arrhythmia Assessment, Urgency, and Management

The same episode of atrial fibrillation is a minor finding in a healthy adult and grounds for anticoagulation in an elderly patient with hypertension: identical signal, opposite decision. Naming the rhythm is only the start; what determines a patient's outcome is the judgement that follows -- what the arrhythmia is across the whole record, what it means for this patient, and what should be done about it. Recent work pairing large language models with the ECG stops short of this, reading one recording without assembling a patient-level finding; and agentic systems built around it either receive the arrhythmia a device has already detected or target a different diagnostic task, stopping before the decision this task requires. We formulate patient-level arrhythmia decision support as a task and present Cardiologent, a multi-agent system that spans it from detection to decision. An agent for each signal -- a single ECG lead and the photoplethysmogram a wearable acquires -- grounds its window reading in measured features rather than a bare label; the readings are assembled into the patient's rhythm profile and, with the patient's own data, reasoned against clinical guidelines retrieved for the case, with a critic checking each conclusion against the guideline it cites. We evaluate the clinical decision rather than the report, across integrated diagnosis, clinical significance, and urgency and management. Cardiologent scores highest on every axis, first on every patient-level task under both cardiologists and an at-scale LLM judge -- whose agreement with the cardiologists (ICC 0.74, 0.66) matches theirs with each other (0.67). Because each conclusion traces to a cited guideline and is validated against expert cardiologists, it yields decisions a clinician can audit rather than act on blindly -- a step toward use in continuous monitoring.
Sukju Oh, Moo-Yong Rhee, Jae-Sik Jang +1
Jul 28, 2026cs.AI

CADENCE: A Cardiac Atom Dictionary for Interpretable Neural Concept Extraction from ECG Foundation Models

Foundation models for 12-lead electrocardiograms (ECGs) transfer well across clinical tasks, but the physiological knowledge encoded in their representations remains opaque. We present CADENCE, a framework that decomposes an ECG foundation model into a human-interpretable, queryable dictionary of physiological concepts. Using a BatchTopK sparse autoencoder, CADENCE factorizes Layer-6 embeddings from more than nine million ECG tokens into 8,192 sparse cardiac atoms. These atoms align better than individual dense embedding dimensions with clinical phenotypes and waveform morphology, recovering arrhythmias, conduction abnormalities, infarction and repolarization patterns, chamber and axis findings, and lead- and beat-phase-specific waveform primitives. At Layer 6, the best atoms achieve mean AUROCs of 0.88 for clinical phenotypes and 0.90 for morphology, versus 0.78 and 0.83 for the best dense dimensions. Sparse atom probes match or outperform dense probes for phenotype, morphology, and age prediction while attributing each prediction to a small set of interpretable atoms; phenotype AUROC improves from 0.93 to 0.95. Atom-space geometry recovers physiologically coherent relationships, and targeted atom ablation selectively changes frozen downstream outputs. An automated LLM pipeline generates and quantitatively validates atom descriptions by predicting held-out activations. On independent external ECG datasets, CADENCE recovers overlapping concepts and maintains consistent phenotype-prediction performance. CADENCE provides a scalable framework for discovering and auditing the physiological knowledge encoded by ECG foundation models.
Yixuan Duan, Arjun Naik, Sadeer Al-Kindi +1
Jul 27, 2026eess.IV

Analysis of the Shortcut Learning and Clever Hans Effect in CNN based ECG Image Classification

Deep learning models for ECG image classification may achieve high accuracy by exploiting non-physiological visual cues instead of ECG waveform morphology. Given the black-box nature of deep learning models, their promise of high predictive performance often remains insufficiently translated into clinical or real-world trust, interpretability, and actionable decision-making. In this study, we examine shortcut learning and Clever Hans effect in a publicly available ECG image dataset using convolutional neural networks. In process we have created six image-derived feature sets (FSs), FS1: raw full ECG images, FS2: cropped waveform-only images, FS3: waveform-masked metadata images, FS4: red-arrow artifact images for the myocardial infarction class, FS5: contrast-enhanced images for the abnormal heartbeat class and FS6: Gaussian-blurred images for the normal class. These controlled representations were used to test whether classification performance persists when waveform information is removed or when artificial class-specific artifacts are introduced. Shortcut retention score, prediction consistency and confidence divergence across Feature-Set Representations have been calculated to assess the transparency about the learning pattern. Along with factual results, average Integrated Gradients and occlusion sensitivity test results are presented to inspect whether model attribution focused on ECG-relevant waveform regions or on non-clinical artifacts. Performance changes across feature sets and attribution patterns were used to identify potential Clever Hans behavior. This study evaluates whether ECG image classifiers learn clinically meaningful morphology or shortcut cues introduced by report layout, metadata, contrast, blur, or artificial markers.
Abhay Kumar Pathak, Mrityunjay Chaubey, Manjari Gupta +1
Jul 27, 2026cs.LG

EchoBridge: Long-Tail-Aware ECG-Echocardiography Text Alignment for Echocardiography-Derived Cardiac Findings

Standardized echocardiography conclusions provide meaningful supervision for learning ECG representations of echocardiography-derived cardiac findings. Global ECG--text alignment may entangle modality-specific factors, while long-tailed finding distributions provide sparse positive supervision for low-prevalence conditions. We propose EchoBridge with Complementary Shared--Private Projection (CSPP) and Adaptive Prototype Boundary Calibration (APBC). CSPP maps each modality into shared and auxiliary private projections, reduces directional redundancy via within-modality orthogonality, and bidirectionally aligns normalized shared projections. APBC organizes the shared hypersphere with class-specific prototypes, training-frequency-adaptive angular margins, and spherical Riesz repulsion. We evaluate EchoBridge on EchoNext-Mini and independent PKUPH and SHTMU cohorts under four protocols: prompt-based inference without downstream classifier training, in-domain frozen linear probing, target-domain cross-center frozen linear probing, and source-only cross-center transfer, supplemented by finding-specific analyses. EchoBridge improves classifier-free AUROC, AUPRC, and F1 over the strongest baselines by 7.88, 5.61, and 4.54 points, respectively, and achieves the highest point estimates across all in-domain and target-domain probing budgets and both source-only transfer cohorts. Finding-specific analyses show gains for most conditions, including several low-prevalence valvular findings.
Xiaocheng Fang, Jieyi Cai, Guangkun Nie +9
Jul 27, 2026cs.AI

Failures Reveal What Metrics Miss: An Evidence-Driven Agent for Recursive Refinement of ECG Classifiers

Deep models have substantially advanced 12-lead ECG classification, yet their refinement still relies heavily on human experts to inspect failures and iteratively revise classifier designs. Recent LLM-based agents have demonstrated the potential for automated model design, but when guided only by aggregate performance metrics, they lack insight into why individual cases fail and how the classifier should be revised. We present RecursiveECG, an evidence-driven LLM-as-Designer framework in which an LLM serves as an offline model designer that refines ECG classifiers based on concrete failures and objective ECG evidence. To ground failure diagnosis in executable evidence, Criteria-to-Measurement Compilation converts curated ECG criteria into validated deterministic functions that produce reproducible, reference-backed measurements for individual ECGs. Building on these measurements, Evidence-Grounded Failure Review analyzes failed and comparator cases by jointly considering raw waveforms, measurements, and model outputs, enabling the LLM to diagnose classifier limitations and formulate targeted revisions. Candidate revisions are executed and re-evaluated under a fixed problem contract, and only evidence-supported updates are retained. The resulting predictor is frozen after refinement and requires no LLM inference during deployment, while an audit trail links each accepted revision to its supporting evidence. Across PTB-XL, Georgia, and CPSC2018, RecursiveECG consistently outperforms strong baselines, achieving an average relative improvement of 10.0%. Extensive ablation and transfer studies further validate the effectiveness of its evidence-grounded refinement process.
Jinliang Deng, Yiming Niu, Yibo Pan +3
Jul 27, 2026eess.SP

Automated ECG Interval Measurement and Wave Delineation Using Fast Fourier Convolution ResNet

Accurate measurement of ECG intervals, including PR, QRS duration, and QT/QTc, is central to cardiac diagnosis, yet the published ECG delineation literature evaluates performance almost exclusively as fiducial-point timing errors on small curated databases, rather than as clinical interval accuracy on large unselected cohorts. We bridge this gap by evaluating a complete end-to-end pipeline on 10,646 clinical 12-lead ECGs and reporting the first large-scale interval measurement accuracy study with full statistical characterisation, including bias, 95% limits of agreement (Bland-Altman), bootstrap confidence intervals, and rhythm-stratified error analysis. The underlying delineation is performed by a Fast Fourier Convolution ResNet (FFCResNet), adapting local temporal convolutions with global spectral processing via FFT and augmented with register tokens for contextual feature learning. Three per-wave models (P, QRS, and T) are trained on six public databases with ECG-specific augmentation. On 10,646 ECGs, the system achieves a QT MAE of 17.5 ms [95% CI: 16.9-18.2], with a Bland-Altman bias of +8.5 ms (LoA: -68.5 to +85.5 ms); a QRS duration MAE of 14.8 ms [95% CI: 14.6-15.0], with a bias of +12.6 ms (LoA: -12.3 to +37.6 ms); and a ventricular rate MAE of 0.8 beats/min. All biases are statistically significant by the Wilcoxon signed-rank test (p < 0.001) but remain within or near published inter-observer variability bounds for sinus rhythms. Rhythm-stratified analysis reveals substantially higher QT errors for supraventricular tachycardias (SVT MAE: 75.0 ms; AVRT MAE: 85.3 ms) than for sinus bradycardia (SB MAE: 9.3 ms) and sinus rhythm (SR MAE: 8.9 ms), providing an honest characterisation of the deployment scope. Wave segmentation achieves internal Dice scores of 95.5%, 98.2%, and 96.1% for P, QRS, and T waves, respectively, and cross-database Dice scores of 78.1%, 85.5%, and 74.2%.
Farhan Adam Mukadam, Harshit Mishra, Nachiket Makwana +3
Jul 27, 2026cs.CY

Beyond Local Inspection: Global, Guideline-Grounded Evaluation of Post-hoc XAI Methods for ECG Classification

Explainable AI (XAI) is used to assess whether artificial intelligence models rely on meaningful patterns, yet explanations that appear plausible for individual predictions may systematically misrepresent model behavior. This is particularly problematic in medicine, where models may rely on irrelevant signal characteristics rather than disease-specific patterns without being recognizable. We address this challenge using electrocardiogram (ECG) data, for which clinical guidelines provide explicit knowledge about diagnostically relevant signal regions. We introduce a global, guideline-grounded framework that aggregates explanations across heartbeats to evaluate them against clinically defined regions of interest. Using four binary classifiers trained on PTB-XL, we assess 13 gradient-based methods across two categories of patterns: low-amplitude segments and high-amplitude QRS morphology. Our results reveal a systematic failure of methods transferred from computer vision. Their explanations often follow signal amplitude rather than clinical relevance, with mean Spearman correlations up to 0.69, leading them to overlook diagnostically decisive low-amplitude regions. For ischemia, LRP-εε assigns only 4.6% of relevance to the ST segment, compared with 63.8% for LRP-SIGN. Nine of 13 methods fall below chance for at least one condition, indicating inconsistent reliability across patterns. These findings show that global, domain-grounded evaluation can uncover systematic explanation failures not obvious from sample-level heatmaps.
Nils Gumpfer, Michael Guckert, Samuel Sossalla +2
Jul 26, 2026cs.LG

Harmonized Interpretable ECG Waveform Features for Robust Cross-Dataset Clinical Prediction

Electrocardiograms (ECGs) are widely used for cardiovascular risk prediction, yet models often fail to transfer across hospitals because of protocol, population, and measurement differences. We benchmark cross-dataset generalization on three tasks - heart failure classification, 30-day all-cause mortality, and 30-day mortality among sinus-rhythm ECGs - using two large cohorts (MIMIC-IV and the Alberta Cohort). To reduce vendor-specific measurement mismatch, we build a harmonized, interpretable feature representation computed directly from raw waveforms: FeatureDB morphology/heart-rate-variability summaries plus compact time-frequency descriptors (autoregressive and wavelet features). We train XGBoost models on this unified feature space and evaluate with patient-disjoint internal and bidirectional external testing. We pre-specify two hypotheses: (H1) external AUROC retains at least 90% of source-site internal AUROC under transfer, and (H2) internal AUROC of the harmonized feature set stays within 10% of dataset-native machine-measurement models. Across tasks, internal AUROC is 0.79-0.82 and cross-dataset AUROC is 0.74-0.78, with larger and direction-dependent AUPRC shifts under transfer. As an exploratory benchmark, an end-to-end ConvNeXt model trained directly on raw ECG waveforms with age and sex achieves higher internal AUROC, while the harmonized representation remains competitive in relative cross-dataset transfer stability. These findings show that a consistent waveform-derived feature interface preserves performance, supports realistic external validation, and provides a transparent alternative for cross-site clinical prediction.
Jie Lin, Weijie Sun, Sunil V. Kalmady +4
Jul 26, 2026cs.LG

Blood Pressure Estimation from PPG: A Comparative Study of Direct and ECG-Mediated Deep Learning Pipelines

Continuous cuffless blood pressure (BP) monitoring is essential for connected health systems and wearable devices, enabling early detection, longitudinal tracking, and personalized management of cardiovascular disease. Many prior approaches attempt to estimate BP indirectly by reconstructing electrocardiography (ECG) from photoplethysmography (PPG), assuming ECG provides a stronger physiological link to BP. However, ECG sensing is less accessible in wearable settings and may introduce unnecessary complexity. In this work, we first perform a large-scale physiological correlation analysis on the MIMIC-III waveform database, revealing that PPG exhibits substantially stronger coupling with arterial blood pressure (ABP) (r=0.247|r|=0.247, p<0.001p<0.001) than ECG does (r=0.018r=0.018, p=0.187p=0.187), challenging the assumption that ECG provides a superior intermediate representation. Motivated by this insight, we conduct a systematic comparison between direct PPG-to-BP prediction and ECG-mediated pipelines using multiple state-of-the-art deep learning models. Across 1.74M segments from 3,127 patients, direct PPG-to-BP prediction achieves British Hypertension Society Grade A performance (MAESBP=4.82mmHg\mathrm{MAE}_{\mathrm{SBP}} = 4.82 mmHg, MAEDBP=4.31mmHg\mathrm{MAE}_{\mathrm{DBP}} = 4.31 mmHg), outperforming all ECG-mediated approaches, which achieve only Grade B accuracy. Our findings suggest that accurate continuous BP monitoring can be achieved directly from wearable PPG signals, enabling simpler, more efficient pipelines for real-world connected health systems.
Bo Wu, Haoling Wang, Zhuodiao Kuang +1
Jul 24, 2026cs.CV

CARDIAG: A Dense Segment Classification Benchmark of Deep Learning Architectures for Coronary Angiography

Accurate pixel-level classification of coronary angiograms is critical for cardiovascular disease assessment, yet the field lacks standardized evaluation protocols. In this work we demonstrate a new benchmark for the assessment of deep learning models which densely classify pixels of coronary angiograms to one of SYNTAX classes (or background). The evaluation covers 24 distinct architectures starting with classic convnets to recent state-space-based vision algorithms. We release CARDIAG - a multi-center, multi-label dataset which we carefully split to reliably compute metrics, accounting for diameter error, overlap, centerline quality and calibration. The data contains SYNTAX labels, binary, uncertainty and segmentation masks as well as intermediate frames together with the selected non-sensitive DICOM metadata. From the multitude of algorithms, we nominate ConvNeXt V2 encoder with DeepLab V3 Plus decoder as the best performing, achieving macro F1=0.456F_1=0.456, which we then ensemble with Mamba U-Net and Feature Pyramid Network, for an increased F1=0.479F_1=0.479. We demonstrate all the architectures to be well calibrated and determine the generalization of the top 5 methods, together with the data efficiency of these architectures. We highlight the importance of both high-resolution and low-resolution features in encoding. We also demonstrate the model correctness in the context of patient demographic, vessel sides and projection angle configurations. Overall the released benchmark allows for future studies to robustly and rigorously assess the proposals, not only for SYNTAX segmentation, but lesion detection and many more.
Dominik Bernard Lau, Hubert Malinowski, Jerzy Szyjut +5
Jul 23, 2026cs.AI

Enhancing Explainable Cardiac Diagnosis with Guide-Grounded Multimodal LLMs

The electrocardiogram (ECG) is a cornerstone of cardiac as- sessment, yet clinical deployment of deep learning models remains con- strained by limited interpretability and the hallucination risk of large language models (LLMs). Existing CNN+Grad-CAM+multimodal LLM frameworks can generate ECG reports, but their explanations are often only weakly grounded in established diagnostic criteria, reducing trust- worthiness and reproducibility. We propose a guide-grounded multimodal framework that explicitly anchors report generation in curated clinical knowledge. A convolutional neural network (CNN) and Grad-CAM first produce class probabilities and class-specific heatmaps from 12-lead ECG images. In parallel, authoritative ECG textbooks and guideline materials are distilled offline into a structured ECG Interpretation Guide, which is injected as a fixed knowledge block for every sample. Conditioned on the ECG image, Grad-CAM overlay, CNN-derived fact pack, and the in- jected guide, a multimodal LLM generates structured diagnostic reports with guideline-consistent terminology and criteria usage. Experiments on the full PTB-XL test set demonstrate that guide grounding improves se- mantic quality and perceived consistency of generated reports while pre- serving competitive classification performance. In particular, our method increases the average BERTScore of generated impressions from 0.818 to 0.953 relative to a strong CNN+Grad-CAM+MLLM baseline, indicat- ing closer alignment with reference reports. These findings suggest that injecting a distilled interpretation guide into the multimodal prompting pipeline offers a practical pathway to reduce hallucinations and enhance the clinical plausibility of LLM-based ECG explanations, bringing ex- plainable cardiac diagnosis closer to real-world deployment.
Hai-Nam Duy Vuong, Duy-Anh Bui, Trong-Nghia Nguyen +5